skbio.sequence.Protein.find_with_regex¶
-
Protein.
find_with_regex
(regex, ignore=None)[source]¶ Generate slices for patterns matched by a regular expression.
State: Stable as of 0.4.0.
- Parameters
regex (str or regular expression object) – String to be compiled into a regular expression, or a pre- compiled regular expression object (e.g., from calling
re.compile
).ignore (1D array_like (bool) or iterable (slices or ints), optional) – Indicate the positions to ignore when matching.
- Yields
slice – Location where the regular expression matched.
Examples
>>> from skbio import Sequence >>> s = Sequence('AATATACCGGTTATAA') >>> for match in s.find_with_regex('(TATA+)'): ... match ... str(s[match]) slice(2, 6, None) 'TATA' slice(11, 16, None) 'TATAA'