libpappsomspp
Library for mass spectrometry
filterresample.h
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1 /**
2  * \file pappsomspp/filers/filterresample.h
3  * \date 28/04/2019
4  * \author Olivier Langella
5  * \brief collection of filters concerned by X selection
6  */
7 
8 /*******************************************************************************
9  * Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
10  *
11  * This file is part of the PAPPSOms++ library.
12  *
13  * PAPPSOms++ is free software: you can redistribute it and/or modify
14  * it under the terms of the GNU General Public License as published by
15  * the Free Software Foundation, either version 3 of the License, or
16  * (at your option) any later version.
17  *
18  * PAPPSOms++ is distributed in the hope that it will be useful,
19  * but WITHOUT ANY WARRANTY; without even the implied warranty of
20  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21  * GNU General Public License for more details.
22  *
23  * You should have received a copy of the GNU General Public License
24  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25  *
26  ******************************************************************************/
27 
28 #pragma once
29 
30 #include "filterinterface.h"
31 #include <cstddef>
32 #include "../../mzrange.h"
33 #include "../../exportinmportconfig.h"
34 
35 namespace pappso
36 {
37 
39 {
40  private:
41  double m_value;
42 
43  public:
44  FilterResampleKeepSmaller(double x_value);
47  Trace &filter(Trace &trace) const override;
48 };
49 
51 {
52  private:
53  double m_value;
54 
55  public:
56  FilterResampleKeepGreater(double x_value);
59 
61  Trace &filter(Trace &trace) const override;
62 
63  double getThresholdX() const;
64 };
65 
67 {
68  private:
69  double m_minX;
70  double m_maxX;
71 
72  public:
73  FilterResampleRemoveXRange(double min_x, double max_x);
76 
78  operator=(const FilterResampleRemoveXRange &other);
79  Trace &filter(Trace &trace) const override;
80 };
81 
83 {
84  private:
85  double m_minX;
86  double m_maxX;
87 
88  public:
89  FilterResampleKeepXRange(double min_x = 0, double max_x = 0);
92 
93  FilterResampleKeepXRange &operator=(const FilterResampleKeepXRange &other);
94 
95  Trace &filter(Trace &trace) const override;
96 };
97 
100 {
101  private:
103 
104  public:
109  MassSpectrum &filter(MassSpectrum &spectrum) const override;
110 };
111 
112 
115 {
116  private:
118 
119  public:
124  MassSpectrum &filter(MassSpectrum &spectrum) const override;
125 };
126 } // namespace pappso
pappso::FilterResampleKeepXRange::m_minX
double m_minX
Definition: filterresample.h:85
pappso::FilterResampleKeepXRange::m_maxX
double m_maxX
Definition: filterresample.h:86
pappso::MassSpectrumFilterResampleKeepMzRange::~MassSpectrumFilterResampleKeepMzRange
virtual ~MassSpectrumFilterResampleKeepMzRange()
Definition: filterresample.h:123
pappso::MassSpectrumFilterResampleRemoveMzRange::~MassSpectrumFilterResampleRemoveMzRange
virtual ~MassSpectrumFilterResampleRemoveMzRange()
Definition: filterresample.h:108
pappso::MassSpectrumFilterResampleKeepMzRange::m_filterRange
const FilterResampleKeepXRange m_filterRange
Definition: filterresample.h:117
pappso::FilterResampleKeepGreater::~FilterResampleKeepGreater
virtual ~FilterResampleKeepGreater()
Definition: filterresample.h:58
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks
Definition: aa.cpp:39
pappso::MassSpectrum
Class to represent a mass spectrum.
Definition: massspectrum.h:71
pappso::FilterResampleKeepXRange::~FilterResampleKeepXRange
virtual ~FilterResampleKeepXRange()
Definition: filterresample.h:91
pappso::FilterResampleKeepGreater
Definition: filterresample.h:51
pappso::FilterInterface
generic interface to apply a filter on a trace
Definition: filterinterface.h:40
pappso::MassSpectrumFilterResampleKeepMzRange
Definition: filterresample.h:115
pappso::MassSpectrumFilterResampleRemoveMzRange
Definition: filterresample.h:100
pappso::MzRange
Definition: mzrange.h:46
pappso::Trace
A simple container of DataPoint instances.
Definition: trace.h:132
filterinterface.h
pappso::FilterResampleKeepSmaller::m_value
double m_value
Definition: filterresample.h:41
pappso::MassSpectrumFilterResampleRemoveMzRange::m_filterRange
const FilterResampleRemoveXRange m_filterRange
Definition: filterresample.h:102
pappso::MassSpectrumFilterInterface
generic interface to apply a filter on a MassSpectrum This is the same as FilterInterface,...
Definition: filterinterface.h:55
pappso::FilterResampleRemoveXRange::m_maxX
double m_maxX
Definition: filterresample.h:70
pappso::FilterResampleRemoveXRange::m_minX
double m_minX
Definition: filterresample.h:69
pappso::FilterResampleKeepSmaller
Definition: filterresample.h:39
pappso::FilterResampleKeepSmaller::~FilterResampleKeepSmaller
virtual ~FilterResampleKeepSmaller()
Definition: filterresample.h:46
pappso::FilterResampleKeepXRange
Definition: filterresample.h:83
pappso::FilterResampleRemoveXRange
Definition: filterresample.h:67
pappso::FilterResampleKeepGreater::m_value
double m_value
Definition: filterresample.h:53
pappso::FilterResampleRemoveXRange::~FilterResampleRemoveXRange
virtual ~FilterResampleRemoveXRange()
Definition: filterresample.h:75