NAME
gt-seqfilter - Filter the given sequence file(s) and show the results on stdout.
SYNOPSIS
gt seqfilter [option …] [sequence_file …]
DESCRIPTION
- -minlength [value]
-
set minimum length a sequence must have to pass the filter (default: undefined)
- -maxlength [value]
-
set maximum length a sequence can have to pass the filter (default: undefined)
- -maxseqnum [value]
-
set the maximum number of sequences which can pass the filter (default: undefined)
- -width [value]
-
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
- -o [filename]
-
redirect output to specified file (default: undefined)
- -gzip [yes|no]
-
write gzip compressed output file (default: no)
- -bzip2 [yes|no]
-
write bzip2 compressed output file (default: no)
- -force [yes|no]
-
force writing to output file (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to <gt-users@genometools.org>.