Enum ReadType

  • All Implemented Interfaces:
    Serializable, Comparable<ReadType>

    public enum ReadType
    extends Enum<ReadType>
    A read type describes a stretch of cycles in an ReadStructure (e.g. Assume we have a paired end/barcoded run with the 76 template cycles followed by 8 barcode cycles followed by another 76 template reads, the run would be represented by the ReadStructure 76T8B76T) Note: Currently SKIP is unused by IlluminaBasecallsToSam, ExtractIlluminaBarcodes, and IlluminaDataProvider
    • Field Detail

      • Template

        public static final ReadType Template
      • Barcode

        public static final ReadType Barcode
      • MolecularIndex

        public static final ReadType MolecularIndex
      • Skip

        public static final ReadType Skip
    • Method Detail

      • values

        public static ReadType[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (ReadType c : ReadType.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static ReadType valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null