Package picard.util
Enum BaitDesigner.DesignStrategy
- java.lang.Object
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- java.lang.Enum<BaitDesigner.DesignStrategy>
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- picard.util.BaitDesigner.DesignStrategy
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- All Implemented Interfaces:
Serializable
,Comparable<BaitDesigner.DesignStrategy>
- Enclosing class:
- BaitDesigner
public static enum BaitDesigner.DesignStrategy extends Enum<BaitDesigner.DesignStrategy>
Set of possible design strategies for bait design.
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Enum Constant Summary
Enum Constants Enum Constant Description CenteredConstrained
Implementation that "constrains" baits to be within the target region when possible.FixedOffset
Design that places baits at fixed offsets over targets, allowing them to hang off the ends as dictated by the target size and offset.Simple
Ultra simple bait design algorithm that just lays down baits starting at the target start position until either the bait start runs off the end of the target or the bait would run off the sequence
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static BaitDesigner.DesignStrategy
valueOf(String name)
Returns the enum constant of this type with the specified name.static BaitDesigner.DesignStrategy[]
values()
Returns an array containing the constants of this enum type, in the order they are declared.
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Enum Constant Detail
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CenteredConstrained
public static final BaitDesigner.DesignStrategy CenteredConstrained
Implementation that "constrains" baits to be within the target region when possible.
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FixedOffset
public static final BaitDesigner.DesignStrategy FixedOffset
Design that places baits at fixed offsets over targets, allowing them to hang off the ends as dictated by the target size and offset.
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Simple
public static final BaitDesigner.DesignStrategy Simple
Ultra simple bait design algorithm that just lays down baits starting at the target start position until either the bait start runs off the end of the target or the bait would run off the sequence
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Method Detail
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values
public static BaitDesigner.DesignStrategy[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:for (BaitDesigner.DesignStrategy c : BaitDesigner.DesignStrategy.values()) System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in the order they are declared
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valueOf
public static BaitDesigner.DesignStrategy valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null
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