libpappsomspp
Library for mass spectrometry
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#include <pwizmsfilereader.h>
Public Member Functions | |
PwizMsFileReader (const QString &file_name) | |
virtual | ~PwizMsFileReader () |
virtual MzFormat | getFileFormat () override |
virtual std::vector< MsRunIdCstSPtr > | getMsRunIds (const QString &run_prefix) override |
Private Member Functions | |
virtual std::size_t | initialize () |
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MsFileReader (const QString &file_name) | |
virtual | ~MsFileReader () |
Private Attributes | |
std::vector< pwiz::msdata::MSDataPtr > | m_msDataPtrVector |
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QString | m_fileName |
MzFormat | m_fileFormat = MzFormat::unknown |
Definition at line 17 of file pwizmsfilereader.h.
pappso::PwizMsFileReader::PwizMsFileReader | ( | const QString & | file_name | ) |
Definition at line 28 of file pwizmsfilereader.cpp.
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virtual |
Definition at line 34 of file pwizmsfilereader.cpp.
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 151 of file pwizmsfilereader.cpp.
References pappso::MsFileReader::m_fileFormat.
Referenced by pappso::MsFileAccessor::getMsRunIds().
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overridevirtual |
Implements pappso::MsFileReader.
Definition at line 162 of file pwizmsfilereader.cpp.
References pappso::Utils::getLexicalOrderedString(), initialize(), pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, m_msDataPtrVector, pappso::MsRunId::setMzFormat(), pappso::MsRunId::setSampleName(), pappso::MsRunId::setXmlId(), and pappso::MsRunId::toString().
Referenced by pappso::MsFileAccessor::getMsRunIds().
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privatevirtual |
Definition at line 40 of file pwizmsfilereader.cpp.
References pappso::MsFileReader::m_fileFormat, pappso::MsFileReader::m_fileName, m_msDataPtrVector, and pappso::Utils::toUtf8StandardString().
Referenced by getMsRunIds().
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private |
Definition at line 20 of file pwizmsfilereader.h.
Referenced by getMsRunIds(), and initialize().