pal.util
Interface XMLConstants
- All Known Implementing Classes:
- BLOSUM62, CPREV, Dayhoff, ElementFactory, ElementParser, F81, F84, GTR, HKY, JTT, MTREV24, TN, TwoStateModel, VT, WAG, YangCodonModel
public interface XMLConstants
constants (strings and numbers) relating to reading and writing XML.
These constants should avoid the use of < and > and other
special XML characters as much as possible.
- Version:
- $Id: XMLConstants.java,v 1.11 2002/06/03 09:18:04 alexi Exp $
- Author:
- Alexei Drummond
SPACES_PER_LEVEL
static final int SPACES_PER_LEVEL
- See Also:
- Constant Field Values
DEMOGRAPHIC_MODEL
static final java.lang.String DEMOGRAPHIC_MODEL
- See Also:
- Constant Field Values
MUTATION_RATE_MODEL
static final java.lang.String MUTATION_RATE_MODEL
- See Also:
- Constant Field Values
RATE_MATRIX
static final java.lang.String RATE_MATRIX
- See Also:
- Constant Field Values
TREE
static final java.lang.String TREE
- See Also:
- Constant Field Values
FREQUENCIES
static final java.lang.String FREQUENCIES
- See Also:
- Constant Field Values
PARAMETER
static final java.lang.String PARAMETER
- See Also:
- Constant Field Values
NODE
static final java.lang.String NODE
- See Also:
- Constant Field Values
EDGE
static final java.lang.String EDGE
- See Also:
- Constant Field Values
ALIGNMENT
static final java.lang.String ALIGNMENT
- See Also:
- Constant Field Values
SEQUENCE
static final java.lang.String SEQUENCE
- See Also:
- Constant Field Values
TIME
static final java.lang.String TIME
- See Also:
- Constant Field Values
TIME_DATA
static final java.lang.String TIME_DATA
- See Also:
- Constant Field Values
ATTRIBUTE
static final java.lang.String ATTRIBUTE
- See Also:
- Constant Field Values
TYPE
static final java.lang.String TYPE
- See Also:
- Constant Field Values
NAME
static final java.lang.String NAME
- See Also:
- Constant Field Values
VALUE
static final java.lang.String VALUE
- See Also:
- Constant Field Values
UNITS
static final java.lang.String UNITS
- See Also:
- Constant Field Values
MODEL
static final java.lang.String MODEL
- See Also:
- Constant Field Values
ID
static final java.lang.String ID
- See Also:
- Constant Field Values
HEIGHT
static final java.lang.String HEIGHT
- See Also:
- Constant Field Values
LENGTH
static final java.lang.String LENGTH
- See Also:
- Constant Field Values
DATA_TYPE
static final java.lang.String DATA_TYPE
- See Also:
- Constant Field Values
DATA_TYPE_ID
static final java.lang.String DATA_TYPE_ID
- See Also:
- Constant Field Values
DIRECTION
static final java.lang.String DIRECTION
- See Also:
- Constant Field Values
ORIGIN
static final java.lang.String ORIGIN
- See Also:
- Constant Field Values
MISSING
static final java.lang.String MISSING
- See Also:
- Constant Field Values
COALESCENT
static final java.lang.String COALESCENT
- See Also:
- Constant Field Values
CONSTANT_POPULATION
static final java.lang.String CONSTANT_POPULATION
- constant population demographic model type
- See Also:
- Constant Field Values
EXPONENTIAL_GROWTH
static final java.lang.String EXPONENTIAL_GROWTH
- See Also:
- Constant Field Values
CONST_EXP_GROWTH
static final java.lang.String CONST_EXP_GROWTH
- See Also:
- Constant Field Values
EXPANDING_POPULATION
static final java.lang.String EXPANDING_POPULATION
- See Also:
- Constant Field Values
CONST_EXP_CONST
static final java.lang.String CONST_EXP_CONST
- See Also:
- Constant Field Values
CONSTANT_MUTATION_RATE
static final java.lang.String CONSTANT_MUTATION_RATE
- See Also:
- Constant Field Values
STEPPED_MUTATION_RATE
static final java.lang.String STEPPED_MUTATION_RATE
- See Also:
- Constant Field Values
UNIFORM
static final java.lang.String UNIFORM
- See Also:
- Constant Field Values
MUTATION_RATE
static final java.lang.String MUTATION_RATE
- See Also:
- Constant Field Values
ANCESTRAL_MU_RATE
static final java.lang.String ANCESTRAL_MU_RATE
- See Also:
- Constant Field Values
MU_STEP_TIME
static final java.lang.String MU_STEP_TIME
- See Also:
- Constant Field Values
POPULATION_SIZE
static final java.lang.String POPULATION_SIZE
- See Also:
- Constant Field Values
GROWTH_RATE
static final java.lang.String GROWTH_RATE
- See Also:
- Constant Field Values
ALPHA
static final java.lang.String ALPHA
- See Also:
- Constant Field Values
ANCESTRAL_POP_SIZE
static final java.lang.String ANCESTRAL_POP_SIZE
- See Also:
- Constant Field Values
CURRENT_POP_SIZE_DURATION
static final java.lang.String CURRENT_POP_SIZE_DURATION
- See Also:
- Constant Field Values
GROWTH_PHASE_DURATION
static final java.lang.String GROWTH_PHASE_DURATION
- See Also:
- Constant Field Values
GENERATIONS
static final java.lang.String GENERATIONS
- See Also:
- Constant Field Values
DAYS
static final java.lang.String DAYS
- See Also:
- Constant Field Values
MONTHS
static final java.lang.String MONTHS
- See Also:
- Constant Field Values
YEARS
static final java.lang.String YEARS
- See Also:
- Constant Field Values
MUTATIONS
static final java.lang.String MUTATIONS
- See Also:
- Constant Field Values
TWO_STATE
static final java.lang.String TWO_STATE
- See Also:
- Constant Field Values
JC
static final java.lang.String JC
- See Also:
- Constant Field Values
F81
static final java.lang.String F81
- See Also:
- Constant Field Values
F84
static final java.lang.String F84
- See Also:
- Constant Field Values
HKY
static final java.lang.String HKY
- See Also:
- Constant Field Values
GTR
static final java.lang.String GTR
- See Also:
- Constant Field Values
TN
static final java.lang.String TN
- See Also:
- Constant Field Values
WAG
static final java.lang.String WAG
- See Also:
- Constant Field Values
JTT
static final java.lang.String JTT
- See Also:
- Constant Field Values
VT
static final java.lang.String VT
- See Also:
- Constant Field Values
CPREV
static final java.lang.String CPREV
- See Also:
- Constant Field Values
BLOSUM62
static final java.lang.String BLOSUM62
- See Also:
- Constant Field Values
MTREV24
static final java.lang.String MTREV24
- See Also:
- Constant Field Values
DAYHOFF
static final java.lang.String DAYHOFF
- See Also:
- Constant Field Values
YANG_CODON_MODEL
static final java.lang.String YANG_CODON_MODEL
- See Also:
- Constant Field Values
A_TO_C
static final java.lang.String A_TO_C
- See Also:
- Constant Field Values
A_TO_G
static final java.lang.String A_TO_G
- See Also:
- Constant Field Values
A_TO_T
static final java.lang.String A_TO_T
- See Also:
- Constant Field Values
C_TO_G
static final java.lang.String C_TO_G
- See Also:
- Constant Field Values
C_TO_T
static final java.lang.String C_TO_T
- See Also:
- Constant Field Values
G_TO_T
static final java.lang.String G_TO_T
- See Also:
- Constant Field Values
KAPPA
static final java.lang.String KAPPA
- See Also:
- Constant Field Values
OMEGA
static final java.lang.String OMEGA
- See Also:
- Constant Field Values
PYRIMIDINE_PURINE_RATIO
static final java.lang.String PYRIMIDINE_PURINE_RATIO
- See Also:
- Constant Field Values
TS_TV_RATIO
static final java.lang.String TS_TV_RATIO
- See Also:
- Constant Field Values
UNKNOWN
static final java.lang.String UNKNOWN
- See Also:
- Constant Field Values
BACKWARDS
static final java.lang.String BACKWARDS
- See Also:
- Constant Field Values
UNIFORM_RATE_DISTRIBUTION
static final java.lang.String UNIFORM_RATE_DISTRIBUTION
- See Also:
- Constant Field Values
GAMMA_DISTRIBUTION
static final java.lang.String GAMMA_DISTRIBUTION
- See Also:
- Constant Field Values
RATE_DISTRIBUTION
static final java.lang.String RATE_DISTRIBUTION
- See Also:
- Constant Field Values
NUMBER_CATEGORIES
static final java.lang.String NUMBER_CATEGORIES
- See Also:
- Constant Field Values
GAMMA_ALPHA
static final java.lang.String GAMMA_ALPHA
- See Also:
- Constant Field Values