Uses of Interface
pal.misc.SampleInformation

Packages that use SampleInformation
pal.mep Classes for the analysis of "measurably evolving populations" (mep). 
pal.misc Classes that don't fit elsewhere ;^) 
pal.treesearch   
 

Uses of SampleInformation in pal.mep
 

Methods in pal.mep with parameters of type SampleInformation
 ConstraintModel DeltaModel.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
           
 ConstraintModel MutationRateModel.Factory.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
           
 

Uses of SampleInformation in pal.misc
 

Classes in pal.misc that implement SampleInformation
 class TOCDSampleInformation
          Title: TOCDSampleInformation
 

Methods in pal.misc that return SampleInformation
 SampleInformation SampleInformation.Factory.createSampleInformation(java.lang.String[] allLeafIDs)
           
 

Uses of SampleInformation in pal.treesearch
 

Constructors in pal.treesearch with parameters of type SampleInformation
FixedBSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)
           
FixedSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)
           
MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)
           
MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double[] rateChangeTimes)
           
SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)
           
SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, boolean allowMetaRate)