Uses of Interface
pal.eval.MolecularClockLikelihoodModel.Leaf

Packages that use MolecularClockLikelihoodModel.Leaf
pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. 
pal.treesearch   
 

Uses of MolecularClockLikelihoodModel.Leaf in pal.eval
 

Methods in pal.eval that return MolecularClockLikelihoodModel.Leaf
 MolecularClockLikelihoodModel.Leaf MolecularClockLikelihoodModel.Instance.createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter, PatternInfo pattern, int[] patternStateMatchup)
           
 

Uses of MolecularClockLikelihoodModel.Leaf in pal.treesearch
 

Methods in pal.treesearch that return MolecularClockLikelihoodModel.Leaf
 MolecularClockLikelihoodModel.Leaf MRDTGlobalClockModel.createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
           
 MolecularClockLikelihoodModel.Leaf ConstraintModel.GroupManager.createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
           
 MolecularClockLikelihoodModel.Leaf SRDTGlobalClockModel.createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
           
 MolecularClockLikelihoodModel.Leaf FixedBSRDTGlobalClockModel.createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
           
 MolecularClockLikelihoodModel.Leaf FixedSRDTGlobalClockModel.createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
           
 MolecularClockLikelihoodModel.Leaf GlobalClockModel.createNewClockLeaf(PatternInfo pattern, int[] patternStateMatchup)
           
protected  MolecularClockLikelihoodModel.Leaf AbstractLeafNode.createNewConstrainedLeafCalculator(ConstraintModel.GroupManager parentGroup)