|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectpal.tree.SimpleTree
pal.tree.ClusterTree
public class ClusterTree
Nested Class Summary | |
---|---|
static interface |
ClusterTree.ClusteringMethod
An interface for describing Clustering methods To be updated to cope with Ward's method and others... |
Nested classes/interfaces inherited from interface pal.tree.Tree |
---|
Tree.TreeBase |
Nested classes/interfaces inherited from interface pal.misc.IdGroup |
---|
IdGroup.Utils |
Field Summary | |
---|---|
static ClusterTree.ClusteringMethod |
COMPLETE_LINKAGE
|
static ClusterTree.ClusteringMethod |
SINGLE_LINKAGE
|
static ClusterTree.ClusteringMethod |
UPGMA
|
static ClusterTree.ClusteringMethod |
WPGMA
|
Fields inherited from interface pal.misc.Units |
---|
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS |
Constructor Summary | |
---|---|
ClusterTree(DistanceMatrix dm,
ClusterTree.ClusteringMethod cm)
|
Method Summary |
---|
Methods inherited from class pal.tree.SimpleTree |
---|
createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Field Detail |
---|
public static final ClusterTree.ClusteringMethod UPGMA
public static final ClusterTree.ClusteringMethod WPGMA
public static final ClusterTree.ClusteringMethod SINGLE_LINKAGE
public static final ClusterTree.ClusteringMethod COMPLETE_LINKAGE
Constructor Detail |
---|
public ClusterTree(DistanceMatrix dm, ClusterTree.ClusteringMethod cm)
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |