pal.eval
Interface MolecularClockLikelihoodModel.Instance
- All Superinterfaces:
- java.io.Serializable
- Enclosing interface:
- MolecularClockLikelihoodModel
public static interface MolecularClockLikelihoodModel.Instance
- extends java.io.Serializable
getSubstitutionModelSummary
java.lang.String getSubstitutionModelSummary()
createNewLeaf
MolecularClockLikelihoodModel.Leaf createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter,
PatternInfo pattern,
int[] patternStateMatchup)
createNewExternal
MolecularClockLikelihoodModel.External createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter)
createNewInternal
MolecularClockLikelihoodModel.Internal createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter)
createAppropriateConditionalProbabilityStore
ConditionalProbabilityStore createAppropriateConditionalProbabilityStore(boolean isForLeaf)
getParameterAccess
NeoParameterized getParameterAccess()