pal.eval
Interface MolecularClockLikelihoodModel.Instance

All Superinterfaces:
java.io.Serializable
Enclosing interface:
MolecularClockLikelihoodModel

public static interface MolecularClockLikelihoodModel.Instance
extends java.io.Serializable


Method Summary
 ConditionalProbabilityStore createAppropriateConditionalProbabilityStore(boolean isForLeaf)
           
 MolecularClockLikelihoodModel.External createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter)
           
 MolecularClockLikelihoodModel.Internal createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter)
           
 MolecularClockLikelihoodModel.Leaf createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter, PatternInfo pattern, int[] patternStateMatchup)
           
 NeoParameterized getParameterAccess()
           
 java.lang.String getSubstitutionModelSummary()
           
 

Method Detail

getSubstitutionModelSummary

java.lang.String getSubstitutionModelSummary()

createNewLeaf

MolecularClockLikelihoodModel.Leaf createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter,
                                                 PatternInfo pattern,
                                                 int[] patternStateMatchup)

createNewExternal

MolecularClockLikelihoodModel.External createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter)

createNewInternal

MolecularClockLikelihoodModel.Internal createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter)

createAppropriateConditionalProbabilityStore

ConditionalProbabilityStore createAppropriateConditionalProbabilityStore(boolean isForLeaf)

getParameterAccess

NeoParameterized getParameterAccess()