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Packages that use ConstraintModel | |
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pal.mep | Classes for the analysis of "measurably evolving populations" (mep). |
pal.treesearch |
Uses of ConstraintModel in pal.mep |
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Methods in pal.mep that return ConstraintModel | |
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ConstraintModel |
DeltaModel.buildConstraintModel(SampleInformation si,
MolecularClockLikelihoodModel.Instance likelihoodModel)
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ConstraintModel |
MutationRateModel.Factory.buildConstraintModel(SampleInformation si,
MolecularClockLikelihoodModel.Instance likelihoodModel)
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Uses of ConstraintModel in pal.treesearch |
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Classes in pal.treesearch that implement ConstraintModel | |
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class |
FixedBSRDTGlobalClockModel
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class |
FixedSRDTGlobalClockModel
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class |
GlobalClockModel
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class |
MRDTGlobalClockModel
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class |
SRDTGlobalClockModel
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class |
UnconstrainedModel
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Methods in pal.treesearch with parameters of type ConstraintModel | |
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GeneralConstraintGroupManager |
GeneralConstraintGroupManager.Store.getConstraintGroupManager(java.lang.String[] leafLabelSet,
ConstraintModel constraints)
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Constructors in pal.treesearch with parameters of type ConstraintModel | |
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GeneralConstructionTool(ConstraintModel constraints,
Alignment alignment)
The constructor |
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GeneralLikelihoodSearcher(Node baseTopology,
Alignment baseAlignment,
ConstraintModel constraintModel)
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