Uses of Class
pal.tree.SplitSystem

Packages that use SplitSystem
pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). 
 

Uses of SplitSystem in pal.tree
 

Methods in pal.tree that return SplitSystem
static SplitSystem SplitUtils.getSplits(IdGroup idGroup, Tree tree)
          creates a split system from a tree (using a pre-specified order of sequences)
static SplitSystem SplitUtils.getSplits(Tree tree)
          creates a split system from a tree (using tree-induced order of sequences)
 

Methods in pal.tree with parameters of type SplitSystem
static double TreeUtils.getRobinsonFouldsDistance(SplitSystem s1, Tree t2)
          computes Robinson-Foulds (1981) distance between two trees
static double TreeUtils.getRobinsonFouldsRescaledDistance(SplitSystem s1, Tree t2)
          computes Robinson-Foulds (1981) distance between two trees rescaled to a number between 0 and 1