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Packages that use AlignmentGenerator | |
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pal.alignment | Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. |
pal.statistics | Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.) |
Uses of AlignmentGenerator in pal.alignment |
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Methods in pal.alignment that return AlignmentGenerator | |
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static AlignmentGenerator |
AlignmentGenerator.Utils.createBootstrapGenerator(Alignment baseAlignment)
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Uses of AlignmentGenerator in pal.statistics |
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Constructors in pal.statistics with parameters of type AlignmentGenerator | |
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GeneralTopologyPool(Tree[] topologies,
LikelihoodEvaluator baseCalculator,
ReplicateLikelihoodEvaluator replicateCalculator,
Alignment baseAlignment,
AlignmentGenerator replicateGenerator)
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