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Packages that use SampleInformation | |
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pal.mep | Classes for the analysis of "measurably evolving populations" (mep). |
pal.misc | Classes that don't fit elsewhere ;^) |
pal.treesearch |
Uses of SampleInformation in pal.mep |
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Methods in pal.mep with parameters of type SampleInformation | |
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ConstraintModel |
DeltaModel.buildConstraintModel(SampleInformation si,
MolecularClockLikelihoodModel.Instance likelihoodModel)
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ConstraintModel |
MutationRateModel.Factory.buildConstraintModel(SampleInformation si,
MolecularClockLikelihoodModel.Instance likelihoodModel)
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Uses of SampleInformation in pal.misc |
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Classes in pal.misc that implement SampleInformation | |
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class |
TOCDSampleInformation
Title: TOCDSampleInformation |
Methods in pal.misc that return SampleInformation | |
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SampleInformation |
SampleInformation.Factory.createSampleInformation(java.lang.String[] allLeafIDs)
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Uses of SampleInformation in pal.treesearch |
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Constructors in pal.treesearch with parameters of type SampleInformation | |
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FixedBSRDTGlobalClockModel(SampleInformation sampleInformation,
MolecularClockLikelihoodModel.Instance likelihoodModel,
double rate)
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FixedSRDTGlobalClockModel(SampleInformation sampleInformation,
MolecularClockLikelihoodModel.Instance likelihoodModel,
double rate)
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MRDTGlobalClockModel(SampleInformation sampleInformation,
MolecularClockLikelihoodModel.Instance likelihoodModel)
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MRDTGlobalClockModel(SampleInformation sampleInformation,
MolecularClockLikelihoodModel.Instance likelihoodModel,
double[] rateChangeTimes)
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SRDTGlobalClockModel(SampleInformation sampleInformation,
MolecularClockLikelihoodModel.Instance likelihoodModel)
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SRDTGlobalClockModel(SampleInformation sampleInformation,
MolecularClockLikelihoodModel.Instance likelihoodModel,
boolean allowMetaRate)
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