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Packages that use SimulatedAlignment.Factory | |
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pal.coalescent | Classes to model population genetic processes using the coalescent. |
pal.supgma |
Uses of SimulatedAlignment.Factory in pal.coalescent |
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Constructors in pal.coalescent with parameters of type SimulatedAlignment.Factory | |
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SerialCoalescentGenerator(TimeOrderCharacterData tocd,
DemographicModel demographicModel,
int numberOfTreesToGenerate,
TreeOperation treeFinisher,
SimulatedAlignment.Factory alignmentFactory)
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SerialCoalescentGenerator(TimeOrderCharacterData tocd,
DemographicModel demographicModel,
TreeOperation treeFinisher,
SimulatedAlignment.Factory alignmentFactory)
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Uses of SimulatedAlignment.Factory in pal.supgma |
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Methods in pal.supgma with parameters of type SimulatedAlignment.Factory | |
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SUPGMABase.CISummary |
SUPGMABase.PopulationParameters.inferCI(AlgorithmCallback callback,
int numberOfReplicates,
SimulatedAlignment.Factory alignmentFactory,
SubstitutionModel evolutionaryModel,
LMSSolver solver)
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