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Packages that use LHCalculator.Generator | |
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pal.eval | Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. |
Uses of LHCalculator.Generator in pal.eval |
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Methods in pal.eval that return LHCalculator.Generator | |
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LHCalculator.Generator |
LHCalculator.Factory.createSeries(int numberOfCategories,
DataType dt)
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Methods in pal.eval with parameters of type LHCalculator.Generator | |
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static UnconstrainedLikelihoodModel.Instance |
SimpleUnconstrainedLikelihoodModel.createInstance(LHCalculator.Generator base,
SubstitutionModel model)
Create a SimpleUnconstrainedLikelihoodModel instance |
LHCalculator.External |
LHCalculator.Generator.createNewExternal(LHCalculator.Generator parentGenerator)
An obscure method, primarily used by the High Accuracy calculator |
LHCalculator.Internal |
LHCalculator.Generator.createNewInternal(LHCalculator.Generator patentGenerator)
An obscure method, primarily used by the High Accuracy calculator |
LHCalculator.Leaf |
LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup,
int numberOfPatterns,
LHCalculator.Generator parentGenerator)
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Constructors in pal.eval with parameters of type LHCalculator.Generator | |
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SimpleLeafCalculator(int[] patternStateMatchup,
int numberOfPatterns,
int numberOfStates,
int numberOfCategories,
LHCalculator.Generator parent)
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