Uses of Interface
pal.tree.TreeGenerator

Packages that use TreeGenerator
pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). 
 

Uses of TreeGenerator in pal.tree
 

Subinterfaces of TreeGenerator in pal.tree
 interface TreeIterator
           
 

Methods in pal.tree that return TreeGenerator
static TreeGenerator TreeGenerator.Utils.createNeighbourJoiningGenerator(DistanceMatrixGenerator dataGenerator, java.lang.String[] outgroupNames)
           
 

Methods in pal.tree with parameters of type TreeGenerator
static Tree TreeUtils.getReplicateCladeSupport(java.lang.String attributeName, Tree baseTree, TreeGenerator treeGenerator, int numberOfReplicates, AlgorithmCallback callback)
          Generates a tree which is identical to baseTree but has attributes (defined by attributeName) at all internal nodes excluding the root node signifying (as a value between 0 and 100) the replicate support by clade (that is the proportion of replicates that produce the sub clade under that node)