Uses of Interface
pal.algorithmics.UndoableAction

Packages that use UndoableAction
pal.algorithmics   
pal.treesearch   
 

Uses of UndoableAction in pal.algorithmics
 

Methods in pal.algorithmics that return UndoableAction
static UndoableAction UndoableAction.Utils.getCombined(UndoableAction[] subActions)
          Create an action that combines multiple actions
static UndoableAction UndoableAction.Utils.getDistributedSelection(UndoableAction[] subActions, double[] actionProportions)
          Create an action that selects uniformly from a number of sub actions
static UndoableAction UndoableAction.Utils.getSimpleDesparation(UndoableAction primaryAction, UndoableAction desparateAction, double desparationLimit, int desparationInterval)
          A simple tool for change actions when things get desparate
static UndoableAction UndoableAction.Utils.getSimpleUniformSelection(UndoableAction[] subActions)
          Create an action that selects uniformly from a number of sub actions
 

Methods in pal.algorithmics with parameters of type UndoableAction
static UndoableAction UndoableAction.Utils.getCombined(UndoableAction[] subActions)
          Create an action that combines multiple actions
static UndoableAction UndoableAction.Utils.getDistributedSelection(UndoableAction[] subActions, double[] actionProportions)
          Create an action that selects uniformly from a number of sub actions
static UndoableAction UndoableAction.Utils.getSimpleDesparation(UndoableAction primaryAction, UndoableAction desparateAction, double desparationLimit, int desparationInterval)
          A simple tool for change actions when things get desparate
static UndoableAction UndoableAction.Utils.getSimpleUniformSelection(UndoableAction[] subActions)
          Create an action that selects uniformly from a number of sub actions
 

Constructors in pal.algorithmics with parameters of type UndoableAction
GeneralObjectState(UndoableAction action, StateProvider subject, boolean maximise)
           
 

Uses of UndoableAction in pal.treesearch
 

Methods in pal.treesearch that return UndoableAction
 UndoableAction UnrootedMLSearcher.getBranchLengthOptimiseAction(StoppingCriteria.Factory stopper)
           
 UndoableAction UnrootedMLSearcher.getBranchLengthWithModelOptimiseAction(StoppingCriteria.Factory stopper, MultivariateMinimum minimiser, int fxFracDigits, int xFracDigits)
           
 UndoableAction UnrootedMLSearcher.getFullSweepSPRAction(StoppingCriteria.Factory stopper)
           
 UndoableAction UnrootedMLSearcher.getModelOptimiseAction(MultivariateMinimum minimiser, int fxFracDigits, int xFracDigits)
           
 UndoableAction UnrootedMLSearcher.getModelOptimiseAction(MultivariateMinimum minimiser, MinimiserMonitor monitor, int fxFracDigits, int xFracDigits)
           
 UndoableAction UnrootedMLSearcher.getNNIAction(StoppingCriteria.Factory stopper)
           
 UndoableAction UnrootedMLSearcher.getNNIBranchLengthOptimiseAction(StoppingCriteria.Factory stopper)
           
 UndoableAction UnrootedMLSearcher.getSPRAction(StoppingCriteria.Factory stopper)
           
 UndoableAction UnrootedMLSearcher.getSweepSPRAction(StoppingCriteria.Factory stopper)