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Packages that use TreeOperation | |
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pal.coalescent | Classes to model population genetic processes using the coalescent. |
pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
Uses of TreeOperation in pal.coalescent |
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Constructors in pal.coalescent with parameters of type TreeOperation | |
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SerialCoalescentGenerator(TimeOrderCharacterData tocd,
DemographicModel demographicModel,
int numberOfTreesToGenerate,
TreeOperation treeFinisher)
Results will not contain alignments |
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SerialCoalescentGenerator(TimeOrderCharacterData tocd,
DemographicModel demographicModel,
int numberOfTreesToGenerate,
TreeOperation treeFinisher,
SimulatedAlignment.Factory alignmentFactory)
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SerialCoalescentGenerator(TimeOrderCharacterData tocd,
DemographicModel demographicModel,
TreeOperation treeFinisher,
SimulatedAlignment.Factory alignmentFactory)
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Uses of TreeOperation in pal.tree |
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Methods in pal.tree that return TreeOperation | |
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static TreeOperation |
TreeOperation.Utils.createPipeline(TreeOperation first,
TreeOperation second)
Creates a tree operation that first applies one tree operation and then applies a second operation to get it's result |
static TreeOperation |
TreeOperation.Utils.createScale(double scaleFactor,
int resultingUnits)
Create a tree operation that scales the input tree and changes the units |
static TreeOperation |
TreeOperation.Utils.getNoOperation()
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Methods in pal.tree with parameters of type TreeOperation | |
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static TreeOperation |
TreeOperation.Utils.createPipeline(TreeOperation first,
TreeOperation second)
Creates a tree operation that first applies one tree operation and then applies a second operation to get it's result |
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