Uses of Interface
pal.math.OrderEnumerator

Packages that use OrderEnumerator
pal.math Classes for math stuff such as optimisation, numerical derivatives, matrix exponentials, random numbers, special function etc. 
pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). 
 

Uses of OrderEnumerator in pal.math
 

Methods in pal.math that return OrderEnumerator
 OrderEnumerator OrderEnumerator.OEFactory.createOrderEnumerator(int size)
          For generating an ordering from 0..size-1.
static OrderEnumerator OrderEnumerator.Utils.getAdjusted(OrderEnumerator toAdjust, int adjustmentFactor)
           
static OrderEnumerator OrderEnumerator.Utils.getAlternating(OrderEnumerator primary, OrderEnumerator secondary)
           
static OrderEnumerator OrderEnumerator.Utils.getBiasAlternating(OrderEnumerator primary, OrderEnumerator secondary)
           
static OrderEnumerator OrderEnumerator.Utils.getConstant(int index)
           
static OrderEnumerator OrderEnumerator.Utils.getOrdered(int size)
           
static OrderEnumerator OrderEnumerator.Utils.getRestricted(OrderEnumerator toRestrict, int minimum, int range)
           
static OrderEnumerator OrderEnumerator.Utils.getShuffled(int size)
           
 OrderEnumerator OrthogonalHints.getSuggestedOrdering(OrderEnumerator defaultOrdering)
          If there is a "best" ordering to use it can be specified here, if not should return null
static OrderEnumerator OrderEnumerator.Utils.getZero()
           
 

Methods in pal.math with parameters of type OrderEnumerator
static OrderEnumerator OrderEnumerator.Utils.getAdjusted(OrderEnumerator toAdjust, int adjustmentFactor)
           
static OrderEnumerator OrderEnumerator.Utils.getAlternating(OrderEnumerator primary, OrderEnumerator secondary)
           
static OrderEnumerator OrderEnumerator.Utils.getBiasAlternating(OrderEnumerator primary, OrderEnumerator secondary)
           
static OrderEnumerator OrderEnumerator.Utils.getRestricted(OrderEnumerator toRestrict, int minimum, int range)
           
 OrderEnumerator OrthogonalHints.getSuggestedOrdering(OrderEnumerator defaultOrdering)
          If there is a "best" ordering to use it can be specified here, if not should return null
 

Uses of OrderEnumerator in pal.tree
 

Methods in pal.tree that return OrderEnumerator
 OrderEnumerator MutationRateModelTree.getSuggestedOrdering(OrderEnumerator defaultOrdering)
           
 

Methods in pal.tree with parameters of type OrderEnumerator
 OrderEnumerator MutationRateModelTree.getSuggestedOrdering(OrderEnumerator defaultOrdering)