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java.lang.Objectpal.distance.DistanceMatrix
pal.distance.ReadDistanceMatrix
public class ReadDistanceMatrix
reads pairwise distance matrices in PHYLIP format (full matrix)
Nested Class Summary |
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Nested classes/interfaces inherited from interface pal.misc.IdGroup |
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IdGroup.Utils |
Constructor Summary | |
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ReadDistanceMatrix(java.io.PushbackReader input)
read from stream |
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ReadDistanceMatrix(java.lang.String file)
read from file |
Method Summary |
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Methods inherited from class pal.distance.DistanceMatrix |
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absoluteDistance, addDistance, getClonedDistances, getClosestIndex, getClosestIndex, getDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setDistances, setIdentifier, setIdGroup, squaredDistance, toString, whichIdNumber |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public ReadDistanceMatrix(java.io.PushbackReader input) throws DistanceParseException
DistanceParseException
public ReadDistanceMatrix(java.lang.String file) throws DistanceParseException, java.io.IOException
DistanceParseException
java.io.IOException
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