Uses of Package
pal.distance

Packages that use pal.distance
pal.distance Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances). 
pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. 
pal.supgma   
pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). 
 

Classes in pal.distance used by pal.distance
DistanceMatrix
          storage for pairwise distance matrices.
DistanceMatrixAccess
           
DistanceMatrixGenerator
           
DistanceParseException
          exception thrown by ReadDistanceMatrix
 

Classes in pal.distance used by pal.eval
DistanceMatrix
          storage for pairwise distance matrices.
 

Classes in pal.distance used by pal.supgma
DistanceMatrix
          storage for pairwise distance matrices.
DistanceMatrixAccess
           
DistanceMatrixGenerator
           
 

Classes in pal.distance used by pal.tree
DistanceMatrix
          storage for pairwise distance matrices.
DistanceMatrixGenerator