Uses of Interface
pal.misc.PalObjectListener

Packages that use PalObjectListener
pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. 
pal.mep Classes for the analysis of "measurably evolving populations" (mep). 
pal.misc Classes that don't fit elsewhere ;^) 
pal.substmodel Classes describing substitution models, i.e. 
 

Uses of PalObjectListener in pal.eval
 

Classes in pal.eval that implement PalObjectListener
 class FastLikelihoodCalculator
          Title: Fast Likelihood Calculator
Description: A fast likelihood calculator
Original code by Matthew Goode.
 class GeneralLikelihoodCalculator
          Title: General Likelihood Calculator
Description: A General likelihood calculator
This calculates the likelihood of an topologically invariant tree (on an unchanging alignment) quickly by remembering partial likelihoods of invariant subtrees, and by essentially generating site patterns for each sub tree.
 

Uses of PalObjectListener in pal.mep
 

Methods in pal.mep with parameters of type PalObjectListener
 void DeltaModel.Instance.addPalObjectListener(PalObjectListener pol)
           
 void DeltaModel.Instance.removePalObjectListener(PalObjectListener pol)
           
 

Uses of PalObjectListener in pal.misc
 

Methods in pal.misc that return PalObjectListener
static PalObjectListener PalEventMulticaster.add(PalObjectListener old, PalObjectListener toAdd)
          For managing PalObjectListeners Usage: PalObjectListener current = null; ...
static PalObjectListener PalEventMulticaster.remove(PalObjectListener old, PalObjectListener toRemove)
          For managing PalObjectListeners Usage: PalObjectListener current = null; ...
 

Methods in pal.misc with parameters of type PalObjectListener
static PalObjectListener PalEventMulticaster.add(PalObjectListener old, PalObjectListener toAdd)
          For managing PalObjectListeners Usage: PalObjectListener current = null; ...
 void PalObjectListener.EventGenerator.addPalObjectListener(PalObjectListener pol)
           
static PalObjectListener PalEventMulticaster.remove(PalObjectListener old, PalObjectListener toRemove)
          For managing PalObjectListeners Usage: PalObjectListener current = null; ...
 void PalObjectListener.EventGenerator.removePalObjectListener(PalObjectListener pol)
           
 

Uses of PalObjectListener in pal.substmodel
 

Classes in pal.substmodel that implement PalObjectListener
 class CachedRateMatrix
          a cached rate matrix.
 

Methods in pal.substmodel with parameters of type PalObjectListener
 void CachedRateMatrix.addPalObjectListener(PalObjectListener pol)
           
 void SingleClassSubstitutionModel.addPalObjectListener(PalObjectListener l)
           
 void SubstitutionModel.addPalObjectListener(PalObjectListener l)
           
 void RateMatrix.addPalObjectListener(PalObjectListener pol)
          Add a PalObjectListener to be notified of changes to the model.
 void GeneralRateDistributionSubstitutionModel.addPalObjectListener(PalObjectListener l)
           
 void AbstractRateMatrix.addPalObjectListener(PalObjectListener pol)
           
 void CachedRateMatrix.removePalObjectListener(PalObjectListener pol)
           
 void SingleClassSubstitutionModel.removePalObjectListener(PalObjectListener l)
           
 void SubstitutionModel.removePalObjectListener(PalObjectListener l)
           
 void RateMatrix.removePalObjectListener(PalObjectListener pol)
           
 void GeneralRateDistributionSubstitutionModel.removePalObjectListener(PalObjectListener l)
           
 void AbstractRateMatrix.removePalObjectListener(PalObjectListener pol)