pal.datatype
Interfaces 
AmbiguousDataType
CodonTable
DataType
MolecularDataType
TransitionPenaltyTable
Classes 
AminoAcids
Codons
CodonTableFactory
CodonTableUtils
DataType.Utils
DataTypeTool
GapBalanced
IUPACNucleotides
IUPACPenaltyTable
MolecularDataType.Utils
Nucleotides
NumericDataType
SimpleDataType
SpecificAminoAcids
StateRemover
TwoStates