Uses of Class
pal.tree.SimulatedAlignment

Packages that use SimulatedAlignment
pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). 
 

Uses of SimulatedAlignment in pal.tree
 

Methods in pal.tree that return SimulatedAlignment
 SimulatedAlignment SimulatedAlignment.Factory.generateAlignment(Tree tree)
          Generate a simulated alignment based on input tree
 SimulatedAlignment[] SimulatedAlignment.Factory.generateAlignments(Tree[] trees, AlgorithmCallback callback)
          Generate an array of simulated alignments based on an array of input trees