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java.lang.Objectpal.datatype.SimpleDataType
pal.datatype.StateRemover
public class StateRemover
A standard data type, but with characters removed
Nested Class Summary |
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Nested classes/interfaces inherited from interface pal.datatype.DataType |
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DataType.Utils |
Field Summary |
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Constructor Summary | |
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StateRemover(DataType toAdjust,
int[] statesToRemove)
A translation array -> originalToAdjusted_["adjusted State"] = "original state" |
Method Summary | |
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protected char |
getCharImpl(int state)
Get character corresponding to a given state |
java.lang.String |
getDescription()
description of data type |
int |
getNumStates()
get number of unique states |
protected int |
getStateImpl(char c)
For sub classes to implement main functionality of getState. |
int |
getTypeID()
get numerical code describing the data type |
protected boolean |
isUnknownStateImpl(int state)
For subclasses to handle, without regard for gaps |
Methods inherited from class pal.datatype.SimpleDataType |
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getAmbiguousVersion, getChar, getPreferredChar, getPreferredCharImpl, getRecommendedGapState, getRecommendedUnknownState, getState, hasGap, isAmbiguous, isGapChar, isGapState, isUnknownChar, isUnknownState, toString |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public StateRemover(DataType toAdjust, int[] statesToRemove)
Method Detail |
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public int getNumStates()
DataType
getNumStates
in interface DataType
protected final boolean isUnknownStateImpl(int state)
SimpleDataType
isUnknownStateImpl
in class SimpleDataType
protected int getStateImpl(char c)
SimpleDataType
getStateImpl
in class SimpleDataType
protected char getCharImpl(int state)
getCharImpl
in class SimpleDataType
public java.lang.String getDescription()
DataType
getDescription
in interface DataType
public int getTypeID()
DataType
getTypeID
in interface DataType
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