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java.lang.Objectpal.alignment.Genotype
public class Genotype
This class provides from genotype to be constructed from separate but paired alignments. This is just a very basic implementation. Other suggested approaches would be welcome.
Constructor Summary | |
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Genotype(Alignment a1,
Alignment a2)
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Method Summary | |
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Alignment |
getAlignment(int i)
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char |
getData(int seq,
int site,
int allele)
sequence alignment at (sequence, site, allele) |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public Genotype(Alignment a1, Alignment a2)
Method Detail |
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public Alignment getAlignment(int i)
public char getData(int seq, int site, int allele)
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