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Packages that use CladeSystem | |
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pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
Uses of CladeSystem in pal.tree |
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Methods in pal.tree that return CladeSystem | |
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static CladeSystem |
CladeSystem.getClades(IdGroup idGroup,
Tree tree)
creates a clade system from a tree (using a pre-specified order of sequences) |
static CladeSystem |
CladeSystem.getClades(Tree tree)
creates a clade system from a tree (using tree-induced order of sequences) |
static CladeSystem[] |
CladeSystem.getCladeSystems(Tree[] trees)
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Methods in pal.tree with parameters of type CladeSystem | |
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static void |
CladeSystem.calculateCladeProbabilities(Tree tree,
CladeSystem[] cladeSystems)
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