|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use pal.util | |
---|---|
pal.algorithmics | |
pal.alignment | Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. |
pal.coalescent | Classes to model population genetic processes using the coalescent. |
pal.distance | Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances). |
pal.misc | Classes that don't fit elsewhere ;^) |
pal.statistics | Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.) |
pal.substmodel | Classes describing substitution models, i.e. |
pal.supgma | |
pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
pal.treesearch | |
pal.util | Utility classes for sorting etc. |
pal.xml | Utility classes for converting PAL objects to and from XML documents. |
Classes in pal.util used by pal.algorithmics | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.alignment | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.coalescent | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.distance | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.misc | |
---|---|
Comparable
interface for an object that is comparable. |
Classes in pal.util used by pal.statistics | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.substmodel | |
---|---|
DoubleKeyCache
|
|
XMLConstants
constants (strings and numbers) relating to reading and writing XML. |
Classes in pal.util used by pal.supgma | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.tree | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.treesearch | |
---|---|
AlgorithmCallback
|
Classes in pal.util used by pal.util | |
---|---|
AlgorithmCallback
|
|
Comparable
interface for an object that is comparable. |
|
Comparator
interface for an object that can compare other objects for the purposes of ordering them. |
|
DoubleKey
|
|
DoubleKeyCache
|
|
Logger
Interface for all objects that provide a logging facility. |
Classes in pal.util used by pal.xml | |
---|---|
XMLConstants
constants (strings and numbers) relating to reading and writing XML. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |