pal.treesearch
Interface ConstraintModel.GroupManager
- All Known Implementing Classes:
- FixedBSRDTGlobalClockModel, FixedSRDTGlobalClockModel, GlobalClockModel, MRDTGlobalClockModel, SRDTGlobalClockModel
- Enclosing interface:
- ConstraintModel
public static interface ConstraintModel.GroupManager
getLeafBaseHeight
double getLeafBaseHeight(java.lang.String leafLabel)
getBaseHeight
double getBaseHeight(double originalExpectSubstitutionHeight)
getExpectedSubstitutionHeight
double getExpectedSubstitutionHeight(double baseHeight)
getBaseHeightUnits
int getBaseHeightUnits()
initialiseParameters
void initialiseParameters(java.lang.String[] leafNames,
double[] leafHeights)
getAllGroupRelatedParameterAccess
NeoParameterized getAllGroupRelatedParameterAccess()
getPrimaryGroupRelatedParameterAccess
NeoParameterized getPrimaryGroupRelatedParameterAccess()
getSecondaryGroupRelatedParameterAccess
NeoParameterized getSecondaryGroupRelatedParameterAccess()
createNewClockLeaf
MolecularClockLikelihoodModel.Leaf createNewClockLeaf(PatternInfo pattern,
int[] patternStateMatchup)
createNewClockExternal
MolecularClockLikelihoodModel.External createNewClockExternal()
createNewClockInternal
MolecularClockLikelihoodModel.Internal createNewClockInternal()