|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use pal.coalescent | |
---|---|
pal.coalescent | Classes to model population genetic processes using the coalescent. |
pal.eval | Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. |
pal.supgma | |
pal.xml | Utility classes for converting PAL objects to and from XML documents. |
Classes in pal.coalescent used by pal.coalescent | |
---|---|
CoalescentIntervals
A series of coalescent intervals representing the time order information contained in a (serial) clock-constrained tree. |
|
ConstantPopulation
This class models coalescent intervals for a constant population (parameter: N0=present-day population size). |
|
ConstExpGrowth
This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0. |
|
DemographicModel
This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model. |
|
DemographicTree
interface defining a parameterized tree that includes demographic information. |
|
ExponentialGrowth
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate). |
|
SerialCoalescentGenerator.Results
A simple wrapper class for containing the results which may either be a number of trees, or a number of trees and alignments (in parallel arrays) |
Classes in pal.coalescent used by pal.eval | |
---|---|
CoalescentIntervals
A series of coalescent intervals representing the time order information contained in a (serial) clock-constrained tree. |
|
DemographicModel
This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model. |
Classes in pal.coalescent used by pal.supgma | |
---|---|
DemographicModel
This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model. |
Classes in pal.coalescent used by pal.xml | |
---|---|
DemographicModel
This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |