pal.mep
Class DeltaModel.Utils
java.lang.Object
pal.mep.DeltaModel.Utils
- Enclosing interface:
- DeltaModel
public static final class DeltaModel.Utils
- extends java.lang.Object
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DeltaModel.Utils
public DeltaModel.Utils()
getMutationRateModelBased
public static final DeltaModel getMutationRateModelBased(MutationRateModel.Factory mepFactory)
- For interfacing with time based mutation rate models
getUntimedBased
public static final DeltaModel getUntimedBased()
- For serial sampled analysis when no time information is available.
getUntimedBased
public static final DeltaModel getUntimedBased(double[] initalDeltas)
- For serial sampled analysis when no time information is available.
- Parameters:
initialDeltas,
- if not of required length (for given tocd) uses subset (or sets remainder to zero)
getDisjointBased
public static final DeltaModel getDisjointBased(DeltaModel primaryModel,
DeltaModel subgroupModel,
TimeOrderCharacterData subgroupTOCD)