Uses of Class
pal.treesearch.UnrootedMLSearcher

Packages that use UnrootedMLSearcher
pal.treesearch   
 

Uses of UnrootedMLSearcher in pal.treesearch
 

Methods in pal.treesearch that return UnrootedMLSearcher
 UnrootedMLSearcher BranchAccess.attach(Node subTree, Alignment fullAlignment)
          Create a new Tree Searcher with a new sub tree attached
 UnrootedMLSearcher BranchAccess.attach(Node subTree, Alignment fullAlignment, SubstitutionModel model)
          Create a new Tree Searcher with a new sub tree attached
 UnrootedMLSearcher BranchAccess.attach(java.lang.String newSequence, Alignment fullAlignment)
          Create a new Tree Searcher with a new sub tree attached
 UnrootedMLSearcher BranchAccess.attach(java.lang.String newSequence, Alignment fullAlignment, SubstitutionModel model)
          Create a new Tree Searcher with a new sub tree attached