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Packages that use AlignmentParseException | |
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pal.alignment | Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. |
Uses of AlignmentParseException in pal.alignment |
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Methods in pal.alignment that throw AlignmentParseException | |
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static Alignment[] |
AlignmentReaders.readAllPhylipClustalAlignments(java.io.Reader r,
DataType dt)
Read an alignment in phylip/clustal/simple format. |
static Alignment |
AlignmentReaders.readPhylipClustalAlignment(java.io.Reader r,
DataType dt)
Read an alignment in phylip/clustal/simple format. |
static void |
AlignmentReaders.readPhylipClustalAlignment(java.io.Reader r,
DataType dt,
AlignmentReceiver receiver)
Read an alignment in phylip/clustal/simple format. |
Constructors in pal.alignment that throw AlignmentParseException | |
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ReadAlignment(java.io.PushbackReader input)
read from stream |
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ReadAlignment(java.lang.String file)
read from file |
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ReadAlignmentOld(java.io.PushbackReader input)
read from stream |
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ReadAlignmentOld(java.lang.String file)
read from file |
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