|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use NucleotideModel | |
---|---|
pal.substmodel | Classes describing substitution models, i.e. |
Uses of NucleotideModel in pal.substmodel |
---|
Subclasses of NucleotideModel in pal.substmodel | |
---|---|
class |
F81
Felsenstein 1981 model of nucleotide evolution |
class |
F84
Felsenstein 1984 (PHYLIP) model of nucleotide evolution |
class |
GTR
GTR (general time reversible) model of nucleotide evolution Lanave, C., G. |
class |
HKY
Hasegawa-Kishino-Yano model of nucleotide evolution Hasegawa, M., H. |
class |
TN
Tamura-Nei model of nucleotide evolution Tamura, K. |
Methods in pal.substmodel that return NucleotideModel | |
---|---|
static NucleotideModel |
NucleotideModel.getInstance(int modelID,
double[] params,
double[] freq)
Create nucleotide substitution model according to model type |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |