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Packages that use AminoAcidModel | |
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pal.substmodel | Classes describing substitution models, i.e. |
Uses of AminoAcidModel in pal.substmodel |
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Subclasses of AminoAcidModel in pal.substmodel | |
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class |
BLOSUM62
BLOSUM62 model of amino acid evolution |
class |
CPREV
CPREV model of amino acid evolution (J.Adachi et al. |
class |
Dayhoff
Dayhoff model for amino acid evolution Dayhoff, M.O., Schwartz, R.M., Orcutt, B.C. |
class |
JTT
JTT model of amino acid evolution Jones, D. |
class |
MTREV24
MTREV24 model of amino acid evolution |
class |
VT
VT (variable time matrix) model of amino acid evolution Modeling Amino Acid Replacement Mueller, T. |
class |
WAG
WAG model of amino acid evolution (S. |
Methods in pal.substmodel that return AminoAcidModel | |
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static AminoAcidModel |
AminoAcidModel.getInstance(int modelID,
double[] freq)
Create amino acid model according to model type |
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