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java.lang.Objectpal.tree.SimpleTree
pal.tree.UPGMATree
public class UPGMATree
constructs a UPGMA tree from pairwise distances
Nested Class Summary |
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Nested classes/interfaces inherited from interface pal.tree.Tree |
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Tree.TreeBase |
Nested classes/interfaces inherited from interface pal.misc.IdGroup |
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IdGroup.Utils |
Field Summary |
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Fields inherited from interface pal.misc.Units |
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DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS |
Constructor Summary | |
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UPGMATree(DistanceMatrix m)
Deprecated. constructor UPGMA tree |
Method Summary |
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Methods inherited from class pal.tree.SimpleTree |
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createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Constructor Detail |
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public UPGMATree(DistanceMatrix m)
m
- distance matrix
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