|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use ParameterizedTree.ParameterizedTreeBase | |
---|---|
pal.coalescent | Classes to model population genetic processes using the coalescent. |
pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
Uses of ParameterizedTree.ParameterizedTreeBase in pal.coalescent |
---|
Subclasses of ParameterizedTree.ParameterizedTreeBase in pal.coalescent | |
---|---|
class |
DemographicClockTree
Provides parameter interface to a clock-like genealogy which is assumed to have some demographic pattern of theta (diversity) as well as branch parameters (the minimal node height differences at each internal node). |
Uses of ParameterizedTree.ParameterizedTreeBase in pal.tree |
---|
Subclasses of ParameterizedTree.ParameterizedTreeBase in pal.tree | |
---|---|
class |
ClockTree
provides parameter interface to a clock tree (parameters are the minimal node height differences at each internal node) |
class |
LogParameterizedTree
This class logarithmically transforms tree parameters. |
class |
MutationRateModelTree
Provides parameter interface to any clock-like tree with serially sampled tips (parameters are the minimal node height differences at each internal node). |
class |
UnconstrainedTree
provides parameter interface to an unconstrained tree (parameters are all available branch lengths) |
Constructors in pal.tree with parameters of type ParameterizedTree.ParameterizedTreeBase | |
---|---|
ParameterizedTree.ParameterizedTreeBase(ParameterizedTree.ParameterizedTreeBase toCopy)
Cloning constructor |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |