Uses of Interface
pal.distance.DistanceMatrixAccess

Packages that use DistanceMatrixAccess
pal.distance Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances). 
pal.supgma   
 

Uses of DistanceMatrixAccess in pal.distance
 

Methods in pal.distance that return DistanceMatrixAccess
static DistanceMatrixAccess DistanceMatrixAccess.Utils.createEvolutionary(Alignment a, SubstitutionModel sm)
           
static DistanceMatrixAccess DistanceMatrixAccess.Utils.createSimple(DistanceMatrix base)
           
 

Uses of DistanceMatrixAccess in pal.supgma
 

Methods in pal.supgma with parameters of type DistanceMatrixAccess
 SUPGMABase.PopulationParameters SUPGMABase.process(DistanceMatrixAccess alternativeSource, AlgorithmCallback callback, LMSSolver solver)
           
 

Constructors in pal.supgma with parameters of type DistanceMatrixAccess
SUPGMABase(DistanceMatrixAccess distanceAccess, DistanceMatrixGenerator replicateGenerator, TimeOrderCharacterData tocd)