Uses of Class
pal.xml.XmlParseException

Packages that use XmlParseException
pal.xml Utility classes for converting PAL objects to and from XML documents. 
 

Uses of XmlParseException in pal.xml
 

Methods in pal.xml that throw XmlParseException
static Alignment ElementParser.parseAlignmentElement(org.w3c.dom.Element e)
          Parses an alignment element and returns an alignment object.
static Attribute ElementParser.parseAttributeElement(org.w3c.dom.Element e)
          parses an attribute element.
static DemographicModel ElementParser.parseDemographicModel(org.w3c.dom.Element e)
          Parses an element from an DOM document into a DemographicModel.
static Node ElementParser.parseEdgeNodeElement(org.w3c.dom.Element e)
           
static double[] ElementParser.parseFrequencies(org.w3c.dom.Element element)
          reads XML format of frequencies.
static MutationRateModel ElementParser.parseMutationRateModel(org.w3c.dom.Element e)
          Reads a mutation rate model from a DOM Document element.
static Node ElementParser.parseNodeElement(org.w3c.dom.Element e)
           
static RateDistribution ElementParser.parseRateDistribution(org.w3c.dom.Element e)
           
static RateMatrix ElementParser.parseRateMatrix(org.w3c.dom.Element e)
          Reads a rate matrix from a DOM Document element.
protected static RateMatrix ElementParser.parseRateMatrix(org.w3c.dom.Element e, Alignment a)
          Reads a rate matrix from a DOM Document element.
static TimeOrderCharacterData ElementParser.parseTimeDataElement(org.w3c.dom.Element e)
           
static Tree ElementParser.parseTreeElement(org.w3c.dom.Element e)
           
static void ElementParser.validateTagName(org.w3c.dom.Element e, java.lang.String name)
          Throws a runtime exception if the element does not have the given name.