pal.eval
Interface MolecularClockLikelihoodModel.Leaf

Enclosing interface:
MolecularClockLikelihoodModel

public static interface MolecularClockLikelihoodModel.Leaf

A ConstrainedLHCalculator.Leaf object is attached to each leaf node and can be used to calculated conditional probabilities across the related branch. Allows for quick implementations as well as implementations that cope correctly with ambiguous characters


Method Summary
 ConditionalProbabilityStore calculateExtendedConditionals(double topHeight, double bottomHeight)
           
 ConditionalProbabilityStore calculateFlatConditionals(double height)
           
 

Method Detail

calculateExtendedConditionals

ConditionalProbabilityStore calculateExtendedConditionals(double topHeight,
                                                          double bottomHeight)

calculateFlatConditionals

ConditionalProbabilityStore calculateFlatConditionals(double height)