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Packages that use SimpleTree | |
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pal.supgma | |
pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
Uses of SimpleTree in pal.supgma |
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Subclasses of SimpleTree in pal.supgma | |
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class |
SUPGMATree
constructs an SUPGMA tree from pairwise distances. |
Uses of SimpleTree in pal.tree |
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Subclasses of SimpleTree in pal.tree | |
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class |
ClusterTree
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class |
NeighborJoiningTree
constructs a neighbor-joining tree from pairwise distances Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. |
class |
ReadTree
constructs a tree reading in a New Hampshire treefile, taking care for internal labels and branch lengths and binary/nonbinary and rooted/unrooted trees |
class |
UPGMATree
Deprecated. Use ClusterTree |
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