pal.datatype
Interface TransitionPenaltyTable

All Known Implementing Classes:
IUPACPenaltyTable

public interface TransitionPenaltyTable

Implements a table of transition penalties for a particular datatype. Used for alignment scoring.

Version:
$Id: TransitionPenaltyTable.java,v 1.2 2001/07/13 14:39:13 korbinian Exp $
Author:
Alexei Drummond

Method Summary
 DataType getDataType()
           
 double penalty(int a, int b)
           
 

Method Detail

penalty

double penalty(int a,
               int b)

getDataType

DataType getDataType()