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Packages that use Summarizable | |
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pal.coalescent | Classes to model population genetic processes using the coalescent. |
pal.mep | Classes for the analysis of "measurably evolving populations" (mep). |
pal.misc | Classes that don't fit elsewhere ;^) |
Uses of Summarizable in pal.coalescent |
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Classes in pal.coalescent that implement Summarizable | |
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class |
ConstantPopulation
This class models coalescent intervals for a constant population (parameter: N0=present-day population size). |
class |
ConstExpConst
This class models a population that grows exponentially from an initial population size alpha N0 at time y to a size N0 at time x until the present-day. |
class |
ConstExpGrowth
This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0. |
class |
DemographicModel
This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model. |
class |
ExpandingPopulation
This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0. |
class |
ExponentialGrowth
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate). |
Uses of Summarizable in pal.mep |
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Classes in pal.mep that implement Summarizable | |
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class |
ConstantMutationRate
This class models a constant mutation rate (parameter: mu = mutation rate). |
class |
MutationRateModel
This abstract class contains methods that are of general use for modelling mutation rate changes over time. |
class |
SteppedMutationRate
This class models a step-wise mutation rate. |
class |
WindowedMutationRate
This class models a windowed mutation rate (parameter: mu = mutation rate). |
Uses of Summarizable in pal.misc |
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Classes in pal.misc that implement Summarizable | |
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class |
SimpleSummarizable
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Constructors in pal.misc with parameters of type Summarizable | |
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SimpleSummarizable(Summarizable toImitate)
The Imitation constructor - for immitating another Summarizable object with minimum memory requirements |
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