Uses of Class
pal.substmodel.AminoAcidModel

Packages that use AminoAcidModel
pal.substmodel Classes describing substitution models, i.e. 
 

Uses of AminoAcidModel in pal.substmodel
 

Subclasses of AminoAcidModel in pal.substmodel
 class BLOSUM62
          BLOSUM62 model of amino acid evolution
 class CPREV
          CPREV model of amino acid evolution (J.Adachi et al.
 class Dayhoff
          Dayhoff model for amino acid evolution Dayhoff, M.O., Schwartz, R.M., Orcutt, B.C.
 class JTT
          JTT model of amino acid evolution Jones, D.
 class MTREV24
          MTREV24 model of amino acid evolution
 class VT
          VT (variable time matrix) model of amino acid evolution Modeling Amino Acid Replacement Mueller, T.
 class WAG
          WAG model of amino acid evolution (S.
 

Methods in pal.substmodel that return AminoAcidModel
static AminoAcidModel AminoAcidModel.getInstance(int modelID, double[] freq)
          Create amino acid model according to model type