Uses of Interface
pal.alignment.AlignmentGenerator

Packages that use AlignmentGenerator
pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. 
pal.statistics Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.) 
 

Uses of AlignmentGenerator in pal.alignment
 

Methods in pal.alignment that return AlignmentGenerator
static AlignmentGenerator AlignmentGenerator.Utils.createBootstrapGenerator(Alignment baseAlignment)
           
 

Uses of AlignmentGenerator in pal.statistics
 

Constructors in pal.statistics with parameters of type AlignmentGenerator
GeneralTopologyPool(Tree[] topologies, LikelihoodEvaluator baseCalculator, ReplicateLikelihoodEvaluator replicateCalculator, Alignment baseAlignment, AlignmentGenerator replicateGenerator)