Uses of Interface
pal.eval.UnconstrainedLikelihoodModel.Leaf

Packages that use UnconstrainedLikelihoodModel.Leaf
pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. 
pal.treesearch   
 

Uses of UnconstrainedLikelihoodModel.Leaf in pal.eval
 

Classes in pal.eval that implement UnconstrainedLikelihoodModel.Leaf
static class SimpleUnconstrainedLikelihoodModel.LeafImpl
           
 

Methods in pal.eval that return UnconstrainedLikelihoodModel.Leaf
 UnconstrainedLikelihoodModel.Leaf UnconstrainedLikelihoodModel.Instance.createNewLeaf(int[] patternStateMatchup, int numberOfPatterns)
          Create anew leaf calculator
 UnconstrainedLikelihoodModel.Leaf SimpleUnconstrainedLikelihoodModel.LeafImpl.getCopy()
           
 UnconstrainedLikelihoodModel.Leaf UnconstrainedLikelihoodModel.Leaf.getCopy()
          Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
 

Uses of UnconstrainedLikelihoodModel.Leaf in pal.treesearch
 

Methods in pal.treesearch that return UnconstrainedLikelihoodModel.Leaf
 UnconstrainedLikelihoodModel.Leaf MRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
 UnconstrainedLikelihoodModel.Leaf ConstraintModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
 UnconstrainedLikelihoodModel.Leaf SRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
 UnconstrainedLikelihoodModel.Leaf FixedBSRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
 UnconstrainedLikelihoodModel.Leaf FixedSRDTGlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
 UnconstrainedLikelihoodModel.Leaf GlobalClockModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
 UnconstrainedLikelihoodModel.Leaf UnconstrainedModel.createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
           
protected  UnconstrainedLikelihoodModel.Leaf AbstractLeafNode.createNewFreeLeafCalculator(GeneralConstructionTool tool)
           
 UnconstrainedLikelihoodModel.Leaf GeneralConstructionTool.createNewFreeLeafCalculator(int[] patternStateMatchup, int numberOfPatterns)