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Packages that use DistanceMatrixAccess | |
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pal.distance | Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances). |
pal.supgma |
Uses of DistanceMatrixAccess in pal.distance |
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Methods in pal.distance that return DistanceMatrixAccess | |
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static DistanceMatrixAccess |
DistanceMatrixAccess.Utils.createEvolutionary(Alignment a,
SubstitutionModel sm)
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static DistanceMatrixAccess |
DistanceMatrixAccess.Utils.createSimple(DistanceMatrix base)
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Uses of DistanceMatrixAccess in pal.supgma |
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Methods in pal.supgma with parameters of type DistanceMatrixAccess | |
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SUPGMABase.PopulationParameters |
SUPGMABase.process(DistanceMatrixAccess alternativeSource,
AlgorithmCallback callback,
LMSSolver solver)
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Constructors in pal.supgma with parameters of type DistanceMatrixAccess | |
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SUPGMABase(DistanceMatrixAccess distanceAccess,
DistanceMatrixGenerator replicateGenerator,
TimeOrderCharacterData tocd)
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