pal.tree
Class UPGMATree

java.lang.Object
  extended by pal.tree.SimpleTree
      extended by pal.tree.UPGMATree
All Implemented Interfaces:
java.io.Serializable, IdGroup, Report, Units, UnitsProvider, Tree

Deprecated. Use ClusterTree

public class UPGMATree
extends SimpleTree

constructs a UPGMA tree from pairwise distances

Version:
$Id: UPGMATree.java,v 1.10 2002/12/05 04:27:28 matt Exp $
Author:
Korbinian Strimmer, Alexei Drummond
See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase
 
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
 
Field Summary
 
Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
 
Constructor Summary
UPGMATree(DistanceMatrix m)
          Deprecated. constructor UPGMA tree
 
Method Summary
 
Methods inherited from class pal.tree.SimpleTree
createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

UPGMATree

public UPGMATree(DistanceMatrix m)
Deprecated. 
constructor UPGMA tree

Parameters:
m - distance matrix