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java.lang.Objectpal.eval.SimpleUnconstrainedLikelihoodModel.LeafImpl
public static final class SimpleUnconstrainedLikelihoodModel.LeafImpl
Constructor Summary | |
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SimpleUnconstrainedLikelihoodModel.LeafImpl(LHCalculator.Leaf base,
SubstitutionModel model)
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Method Summary | |
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UnconstrainedLikelihoodModel.Leaf |
getCopy()
Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently) |
ConditionalProbabilityStore |
getExtendedConditionalProbabilities(double distance)
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ConditionalProbabilityStore |
getFlatConditionalProbabilities()
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SimpleUnconstrainedLikelihoodModel.LeafImpl(LHCalculator.Leaf base, SubstitutionModel model)
Method Detail |
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public ConditionalProbabilityStore getFlatConditionalProbabilities()
getFlatConditionalProbabilities
in interface UnconstrainedLikelihoodModel.Leaf
public ConditionalProbabilityStore getExtendedConditionalProbabilities(double distance)
getExtendedConditionalProbabilities
in interface UnconstrainedLikelihoodModel.Leaf
public UnconstrainedLikelihoodModel.Leaf getCopy()
UnconstrainedLikelihoodModel.Leaf
getCopy
in interface UnconstrainedLikelihoodModel.Leaf
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