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Packages that use pal.distance | |
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pal.distance | Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances). |
pal.eval | Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. |
pal.supgma | |
pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
Classes in pal.distance used by pal.distance | |
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DistanceMatrix
storage for pairwise distance matrices. |
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DistanceMatrixAccess
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DistanceMatrixGenerator
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DistanceParseException
exception thrown by ReadDistanceMatrix |
Classes in pal.distance used by pal.eval | |
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DistanceMatrix
storage for pairwise distance matrices. |
Classes in pal.distance used by pal.supgma | |
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DistanceMatrix
storage for pairwise distance matrices. |
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DistanceMatrixAccess
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DistanceMatrixGenerator
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Classes in pal.distance used by pal.tree | |
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DistanceMatrix
storage for pairwise distance matrices. |
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DistanceMatrixGenerator
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