pal.statistics
Interface TopologyTestEngine.StatisticsHandler

All Known Implementing Classes:
ShimodairaHasegawaStatistics
Enclosing class:
TopologyTestEngine

public static interface TopologyTestEngine.StatisticsHandler


Method Summary
 double[] getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods, int numberOfTopologies)
           
 double[] getPValues(double[] originalOptimisedLogLikelihoods, double[][] replicateLogLikelihoods, int numberOfReplicates, int numberOfTopologies)
           
 

Method Detail

getOriginalTestStatistics

double[] getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods,
                                   int numberOfTopologies)

getPValues

double[] getPValues(double[] originalOptimisedLogLikelihoods,
                    double[][] replicateLogLikelihoods,
                    int numberOfReplicates,
                    int numberOfTopologies)
Parameters:
originalOptimisedLogLikelihoods - stored as [topology]
replicateLogLikelihoods - store as [replicate][topology]
numberOfTopologies - the number of topologies
numberOfTopologies - the number of replicates
Returns: