Uses of Interface
pal.treesearch.ConstraintModel

Packages that use ConstraintModel
pal.mep Classes for the analysis of "measurably evolving populations" (mep). 
pal.treesearch   
 

Uses of ConstraintModel in pal.mep
 

Methods in pal.mep that return ConstraintModel
 ConstraintModel DeltaModel.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
           
 ConstraintModel MutationRateModel.Factory.buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
           
 

Uses of ConstraintModel in pal.treesearch
 

Classes in pal.treesearch that implement ConstraintModel
 class FixedBSRDTGlobalClockModel
           
 class FixedSRDTGlobalClockModel
           
 class GlobalClockModel
           
 class MRDTGlobalClockModel
           
 class SRDTGlobalClockModel
           
 class UnconstrainedModel
           
 

Methods in pal.treesearch with parameters of type ConstraintModel
 GeneralConstraintGroupManager GeneralConstraintGroupManager.Store.getConstraintGroupManager(java.lang.String[] leafLabelSet, ConstraintModel constraints)
           
 

Constructors in pal.treesearch with parameters of type ConstraintModel
GeneralConstructionTool(ConstraintModel constraints, Alignment alignment)
          The constructor
GeneralLikelihoodSearcher(Node baseTopology, Alignment baseAlignment, ConstraintModel constraintModel)