pal.eval
Interface MolecularClockLikelihoodModel.Simulator

Enclosing interface:
MolecularClockLikelihoodModel

public static interface MolecularClockLikelihoodModel.Simulator


Method Summary
 int[] generateRoot(double sampleHeight)
           
 int[] getSimulated(int[] baseSequence, double topBaseHeight, double bottomBaseHeight)
           
 void resetDistributions()
           
 void simulated(int[] baseSequence, double topBaseHeight, double bottomBaseHeight, int[] newSequence)
           
 

Method Detail

getSimulated

int[] getSimulated(int[] baseSequence,
                   double topBaseHeight,
                   double bottomBaseHeight)

simulated

void simulated(int[] baseSequence,
               double topBaseHeight,
               double bottomBaseHeight,
               int[] newSequence)

generateRoot

int[] generateRoot(double sampleHeight)

resetDistributions

void resetDistributions()