Uses of Interface
pal.eval.LikelihoodCalculator

Packages that use LikelihoodCalculator
pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. 
 

Uses of LikelihoodCalculator in pal.eval
 

Classes in pal.eval that implement LikelihoodCalculator
 class FastLikelihoodCalculator
          Title: Fast Likelihood Calculator
Description: A fast likelihood calculator
Original code by Matthew Goode.
 class GeneralLikelihoodCalculator
          Title: General Likelihood Calculator
Description: A General likelihood calculator
This calculates the likelihood of an topologically invariant tree (on an unchanging alignment) quickly by remembering partial likelihoods of invariant subtrees, and by essentially generating site patterns for each sub tree.
 class SimpleLikelihoodCalculator