Uses of Package
pal.io

Packages that use pal.io
pal.coalescent Classes to model population genetic processes using the coalescent. 
pal.io Classes for simple (formatted) input/output from/to files, strings and standard-in/out streams. 
pal.mep Classes for the analysis of "measurably evolving populations" (mep). 
pal.substmodel Classes describing substitution models, i.e. 
 

Classes in pal.io used by pal.coalescent
FormattedOutput
          tools to simplify formatted output to a stream
 

Classes in pal.io used by pal.io
FormattedInput
          tools to simplify formatted input from an input stream
FormattedOutput
          tools to simplify formatted output to a stream
InputSource
          convenience class to open input streams linked to files, stdin, and strings
NexusParseException
          Exception class for the NexusParser.
OutputTarget
          convenience class to create output streams linked to files, stdout, and strings
 

Classes in pal.io used by pal.mep
FormattedOutput
          tools to simplify formatted output to a stream
 

Classes in pal.io used by pal.substmodel
FormattedOutput
          tools to simplify formatted output to a stream