Uses of Interface
pal.eval.LHCalculator.Leaf

Packages that use LHCalculator.Leaf
pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. 
 

Uses of LHCalculator.Leaf in pal.eval
 

Classes in pal.eval that implement LHCalculator.Leaf
 class SimpleLeafCalculator
           
 

Methods in pal.eval that return LHCalculator.Leaf
 LHCalculator.Leaf LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup, int numberOfPatterns)
          Create anew leaf calculator
 LHCalculator.Leaf LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup, int numberOfPatterns, LHCalculator.Generator parentGenerator)
           
 LHCalculator.Leaf LHCalculator.Leaf.getCopy()
          Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
 LHCalculator.Leaf SimpleLeafCalculator.getCopy()
           
 

Constructors in pal.eval with parameters of type LHCalculator.Leaf
SimpleUnconstrainedLikelihoodModel.LeafImpl(LHCalculator.Leaf base, SubstitutionModel model)