Uses of Class
pal.misc.LabelMapping

Packages that use LabelMapping
pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. 
pal.gui GUI components for some special objects (e.g., trees). 
pal.misc Classes that don't fit elsewhere ;^) 
pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). 
 

Uses of LabelMapping in pal.alignment
 

Constructors in pal.alignment with parameters of type LabelMapping
SimpleAlignment(Alignment a, LabelMapping lm)
          Clone constructor.
 

Uses of LabelMapping in pal.gui
 

Methods in pal.gui with parameters of type LabelMapping
 void TreePainter.setLabelMapping(LabelMapping lp)
           
 void TreeComponent.setLabelMapping(LabelMapping lm)
           
 

Uses of LabelMapping in pal.misc
 

Methods in pal.misc that return LabelMapping
 LabelMapping LabelMapping.getRelabeled(LabelMapping.Relabeller relabeller)
           
 LabelMapping LabelMapping.getUniquifiedMappings()
          If a mapping occurs more than once will rename instance to "x 1", "x 2"...
 

Uses of LabelMapping in pal.tree
 

Methods in pal.tree with parameters of type LabelMapping
protected  void SimpleNode.init(Node n, boolean keepId, LabelMapping lm)
          Initialized node instance variables based on given Node.
 

Constructors in pal.tree with parameters of type LabelMapping
SimpleNode(Node n, LabelMapping lm)
           
SimpleTree(Tree tree, LabelMapping lm)
          clone constructor