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Packages that use SplitSystem | |
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pal.tree | Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). |
Uses of SplitSystem in pal.tree |
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Methods in pal.tree that return SplitSystem | |
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static SplitSystem |
SplitUtils.getSplits(IdGroup idGroup,
Tree tree)
creates a split system from a tree (using a pre-specified order of sequences) |
static SplitSystem |
SplitUtils.getSplits(Tree tree)
creates a split system from a tree (using tree-induced order of sequences) |
Methods in pal.tree with parameters of type SplitSystem | |
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static double |
TreeUtils.getRobinsonFouldsDistance(SplitSystem s1,
Tree t2)
computes Robinson-Foulds (1981) distance between two trees |
static double |
TreeUtils.getRobinsonFouldsRescaledDistance(SplitSystem s1,
Tree t2)
computes Robinson-Foulds (1981) distance between two trees rescaled to a number between 0 and 1 |
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