pal.eval
Interface UnconstrainedLikelihoodModel.Leaf
- All Known Implementing Classes:
- SimpleUnconstrainedLikelihoodModel.LeafImpl
- Enclosing interface:
- UnconstrainedLikelihoodModel
public static interface UnconstrainedLikelihoodModel.Leaf
A LHCalculator.Leaf object is attached to each leaf node and can be used to calculated conditional probabilities across the related branch.
Allows for quick implementations as well as implementations that cope correctly with ambiguous characters
getFlatConditionalProbabilities
ConditionalProbabilityStore getFlatConditionalProbabilities()
getExtendedConditionalProbabilities
ConditionalProbabilityStore getExtendedConditionalProbabilities(double distance)
getCopy
UnconstrainedLikelihoodModel.Leaf getCopy()
- Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
- Returns:
- a copy of this leaf calculator