Uses of Class
pal.substmodel.NucleotideModel

Packages that use NucleotideModel
pal.substmodel Classes describing substitution models, i.e. 
 

Uses of NucleotideModel in pal.substmodel
 

Subclasses of NucleotideModel in pal.substmodel
 class F81
          Felsenstein 1981 model of nucleotide evolution
 class F84
          Felsenstein 1984 (PHYLIP) model of nucleotide evolution
 class GTR
          GTR (general time reversible) model of nucleotide evolution Lanave, C., G.
 class HKY
          Hasegawa-Kishino-Yano model of nucleotide evolution Hasegawa, M., H.
 class TN
          Tamura-Nei model of nucleotide evolution Tamura, K.
 

Methods in pal.substmodel that return NucleotideModel
static NucleotideModel NucleotideModel.getInstance(int modelID, double[] params, double[] freq)
          Create nucleotide substitution model according to model type