vg
tools for working with variation graphs
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#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <list>
#include <fstream>
#include "subcommand.hpp"
#include "../gbwt_helper.hpp"
#include <vg/io/vpkg.hpp>
#include <bdsg/overlays/overlay_helper.hpp>
#include <gbwtgraph/gbwtgraph.h>
#include <gbwtgraph/path_cover.h>
Enumerations | |
enum | operation_mode { operation_none, operation_merge, operation_graph, operation_remove, operation_other } |
enum | path_cover_mode { path_cover_none, path_cover_augment, path_cover_local, path_cover_greedy } |
Functions | |
void | help_gbwt (char **argv) |
int | main_gbwt (int argc, char **argv) |
Defines the "vg gbwt" subcommand, which wraps up access for commands we'd otherwise find in the gbwt submodule.
enum operation_mode |
enum path_cover_mode |
void help_gbwt | ( | char ** | argv | ) |
int main_gbwt | ( | int | argc, |
char ** | argv | ||
) |