vg
tools for working with variation graphs
vg::GafAlignmentEmitter Member List

This is the complete list of members for vg::GafAlignmentEmitter, including all inherited members.

emit_mapped_pair(vector< Alignment > &&alns1, vector< Alignment > &&alns2, int64_t tlen_limit=0)vg::AlignmentEmittervirtual
emit_mapped_pairs(vector< vector< Alignment >> &&alns1_batch, vector< vector< Alignment >> &&alns2_batch, vector< int64_t > &&tlen_limit_batch)vg::GafAlignmentEmittervirtual
emit_mapped_single(vector< Alignment > &&alns)vg::AlignmentEmittervirtual
emit_mapped_singles(vector< vector< Alignment >> &&alns_batch)vg::GafAlignmentEmittervirtual
emit_pair(Alignment &&aln1, Alignment &&aln2, int64_t tlen_limit=0)vg::AlignmentEmittervirtual
emit_pairs(vector< Alignment > &&aln1_batch, vector< Alignment > &&aln2_batch, vector< int64_t > &&tlen_limit_batch)vg::GafAlignmentEmittervirtual
emit_single(Alignment &&aln)vg::AlignmentEmittervirtual
emit_singles(vector< Alignment > &&aln_batch)vg::GafAlignmentEmittervirtual
GafAlignmentEmitter(const string &filename, const string &format, const HandleGraph &_graph, size_t max_threads)vg::GafAlignmentEmitter
graphvg::GafAlignmentEmitterprivate
multiplexervg::GafAlignmentEmitterprivate
out_filevg::GafAlignmentEmitterprivate
~AlignmentEmitter()=defaultvg::AlignmentEmittervirtual
~GafAlignmentEmitter()vg::GafAlignmentEmitter