vg
tools for working with variation graphs
Namespaces | Functions
gbwt_helper.cpp File Reference
#include "gbwt_helper.hpp"
#include "utility.hpp"
#include <sstream>

Namespaces

 vg
 

Functions

std::vector< std::string > vg::parseGenotypes (const std::string &vcf_line, size_t num_samples)
 
std::string vg::insert_gbwt_path (MutablePathHandleGraph &graph, const gbwt::GBWT &gbwt_index, gbwt::size_type id)
 
Path vg::extract_gbwt_path (const HandleGraph &graph, const gbwt::GBWT &gbwt_index, gbwt::size_type id)
 
std::string vg::thread_name (const gbwt::GBWT &gbwt_index, gbwt::size_type id)
 
gbwt::GBWT vg::get_gbwt (const std::vector< gbwt::vector_type > &paths)
 Transform the paths into a GBWT index. Primarily for testing. More...