Uses of Class
jebl.evolution.align.Output
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Packages that use Output Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences. -
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Uses of Output in jebl.evolution.align
Subclasses of Output in jebl.evolution.align Modifier and Type Class Description class
SystemOut
Methods in jebl.evolution.align with parameters of type Output Modifier and Type Method Description void
Align. doMatch(Output out, java.lang.String msg)
Print the score and the alignmentvoid
Align. doMatch(Output out, java.lang.String msg, boolean outputFMatrix)
Print the score, the F matrix, and the alignmentabstract void
Align. printf(Output out)
Print the matrix (matrices) used to compute the alignmentvoid
NonOverlapMultipleLocalAffine. printf(Output out)
Print matrix used to calculate this alignment.
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