Class FastaExporter

  • All Implemented Interfaces:
    SequenceExporter

    public class FastaExporter
    extends java.lang.Object
    implements SequenceExporter
    Class for exporting a fasta file format.
    Version:
    $Id: FastaExporter.java 442 2006-09-05 21:59:20Z matt_kearse $
    Author:
    Andrew Rambaut, Alexei Drummond
    • Constructor Summary

      Constructors 
      Constructor Description
      FastaExporter​(java.io.Writer writer)
      Constructor
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void exportSequences​(java.util.Collection<? extends Sequence> sequences)
      export alignment or set of sequences.
      • Methods inherited from class java.lang.Object

        equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • FastaExporter

        public FastaExporter​(java.io.Writer writer)
        Constructor
    • Method Detail

      • exportSequences

        public void exportSequences​(java.util.Collection<? extends Sequence> sequences)
                             throws java.io.IOException
        export alignment or set of sequences.
        Specified by:
        exportSequences in interface SequenceExporter
        Throws:
        java.io.IOException