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18 #ifndef __WEIPA_FINLEYNODES_H__
19 #define __WEIPA_FINLEYNODES_H__
21 #include <weipa/NodeData.h>
27 #define NCFTYPE netCDF::NcFile&
31 #define NCFTYPE NcFile*
58 const std::string& meshName);
93 virtual std::string
getName()
const {
return name; }
134 if (result.length() == 0 || *result.rbegin() !=
'/')
143 #endif // __WEIPA_FINLEYNODES_H__
index_t * globalDegreesOfFreedom
Definition: dudley/src/NodeFile.h:156
virtual int getNumNodes() const
Returns the number of mesh nodes.
Definition: FinleyNodes.h:113
const IntVec & getVarDataByName(const std::string &name) const
Returns an array of nodal data by the given name.
Definition: FinleyNodes.cpp:396
index_t * globalReducedNodesIndex
Definition: finley/src/NodeFile.h:180
bool initFromDudley(const dudley::NodeFile *dudleyFile)
Initialises with dudley node file.
Definition: FinleyNodes.cpp:141
IntVec nodeDist
Definition: FinleyNodes.h:124
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition: dudley/src/NodeFile.h:163
int numDim
number of spatial dimensions
Definition: dudley/src/NodeFile.h:145
Definition: dudley/src/NodeFile.h:38
index_t * globalDegreesOfFreedom
Definition: finley/src/NodeFile.h:172
virtual std::string getName() const
Returns the name of this node mesh.
Definition: FinleyNodes.h:92
int * Tag
Tag[i] is the tag of node i.
Definition: finley/src/NodeFile.h:165
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition: finley/src/NodeFile.h:185
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: dudley/src/NodeFile.h:203
index_t * globalReducedDOFIndex
Definition: finley/src/NodeFile.h:177
virtual void writeCoordinatesVTK(std::ostream &os, int ownIndex)
Writes coordinates to a stream in VTK text format.
Definition: FinleyNodes.cpp:443
IntVec nodeGNI
Definition: FinleyNodes.h:123
std::string siloPath
the name of this node mesh
Definition: FinleyNodes.h:126
bool readFromNc(NcFile *ncFile)
Reads node data from a NetCDF file.
Definition: FinleyNodes.cpp:319
virtual int getGlobalNumNodes() const
Returns the total number of mesh nodes for a distributed mesh.
Definition: FinleyNodes.cpp:432
Definition: DataVar.cpp:50
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: finley/src/NodeFile.h:255
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:113
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: finley/src/NodeFile.h:174
Definition: NodeData.h:39
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:32
IntVec nodeGDOF
Definition: FinleyNodes.h:123
IntVec nodeTag
node IDs
Definition: FinleyNodes.h:123
std::map< int, size_t > IndexMap
Definition: weipa.h:62
std::vector< float * > CoordArray
Definition: weipa.h:61
virtual const IntVec & getGlobalNodeIndices() const
Returns the global node index array.
Definition: FinleyNodes.h:104
bool initFromFinley(const finley::NodeFile *finleyFile)
Initialises with finley node file.
Definition: FinleyNodes.cpp:188
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: finley/src/NodeFile.h:163
virtual ~FinleyNodes()
Virtual destructor.
Definition: FinleyNodes.cpp:131
IntVec nodeID
number of nodes
Definition: FinleyNodes.h:122
std::string getFullSiloName() const
Returns full Silo mesh name, e.g. "/block0000/Nodes".
Definition: FinleyNodes.h:130
virtual int getNumDims() const
Returns the dimensionality of this mesh (2 or 3).
Definition: FinleyNodes.h:110
int numNodes
dimensionality (2 or 3)
Definition: FinleyNodes.h:121
bool writeToSilo(DBfile *dbfile)
Writes node data to a Silo file.
Definition: FinleyNodes.cpp:464
void setSiloPath(const std::string &path)
Sets the silo path to be used when saving.
Definition: FinleyNodes.h:81
virtual const CoordArray & getCoords() const
Returns the coordinates of the mesh nodes.
Definition: FinleyNodes.h:107
int numDims
x, y[, z] coordinates of nodes
Definition: FinleyNodes.h:120
#define NCFTYPE
Definition: FinleyNodes.h:30
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:85
virtual const IntVec & getNodeIDs() const
Returns the node ID array.
Definition: FinleyNodes.h:98
CoordArray coords
Definition: FinleyNodes.h:119
Definition: finley/src/NodeFile.h:40
IntVec nodeGRDFI
Definition: FinleyNodes.h:123
std::string name
node distribution
Definition: FinleyNodes.h:125
FinleyNodes(const std::string &meshName)
Constructor with mesh name.
Definition: FinleyNodes.cpp:54
std::vector< std::string > StringVec
Definition: weipa.h:60
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: finley/src/NodeFile.h:182
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: dudley/src/NodeFile.h:147
int * Tag
Tag[i] is the tag of node i.
Definition: dudley/src/NodeFile.h:149
Stores and manipulates finley mesh nodes.
Definition: FinleyNodes.h:50
boost::shared_ptr< FinleyNodes > FinleyNodes_ptr
Definition: FinleyNodes.h:42
virtual const IntVec & getNodeDistribution() const
Returns the node distribution array.
Definition: FinleyNodes.h:101
virtual StringVec getVarNames() const
Returns a vector with the mesh variable names.
Definition: FinleyNodes.cpp:417
std::vector< int > IntVec
Definition: weipa.h:59
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:32
int numDim
number of spatial dimensions
Definition: finley/src/NodeFile.h:161
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: dudley/src/NodeFile.h:158
IntVec nodeGRNI
Definition: FinleyNodes.h:123
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: dudley/src/NodeFile.h:160