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Assert.h
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17 
18 #ifndef __ESCRIPT_ASSERT_H__
19 #define __ESCRIPT_ASSERT_H__
20 
32 #if DOASSERT
33 
34 //
35 // DOASSERT is defined, evaluate assertions and abort on failure.
36 //
37 
38 #include <escript/EsysException.h>
39 #include <iostream>
40 #include <sstream>
41 
42 #if ESYS_MPI
43 
44 #include <mpi.h>
45 
46 #define ESYS_ASSERT(assert_test, assert_msg)\
47  do {\
48  const bool result = (assert_test);\
49  if (!result) {\
50  std::ostringstream message;\
51  message << assert_msg << "\n\n"\
52  << __FILE__ << ":" << __LINE__ << ": " << #assert_test << "\n";\
53  std::cerr << message.str();\
54  MPI_Abort(MPI_COMM_WORLD, 455347);\
55  }\
56  } while (0)
57 
58 #else
59 
60 #define ESYS_ASSERT(assert_test, assert_msg)\
61  do {\
62  const bool result = (assert_test);\
63  if (!result) {\
64  std::ostringstream message;\
65  message << assert_msg << "\n\n"\
66  << __FILE__ << ":" << __LINE__ << ": " << #assert_test << "\n";\
67  throw escript::AssertException(message.str());\
68  }\
69  } while (0)
70 
71 #endif // ESYS_MPI
72 
73 #else // !DOASSERT
74 
75 //
76 // DOASSERT is not defined, replace ESYS_ASSERT macro with no-op
77 //
78 
79 #define ESYS_ASSERT(a,b)
80 
81 #endif
82 
83 #endif // __ESCRIPT_ASSERT_H__
84 
FINLEY_POINTS
#define FINLEY_POINTS
Definition: Finley.h:65
escript::Data::isComplex
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1164
dudley::QuadWeight
static const double QuadWeight[4][2]
Definition: ShapeTable.h:84
finley::Assemble_jacobians_3D_M2D_E2D
void Assemble_jacobians_3D_M2D_E2D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:678
dudley::util::smallMatSetMult1
void smallMatSetMult1(int len, int A1, int A2, Scalar *A, int B2, const Scalar *B, const double *C)
Definition: dudley/src/Util.cpp:113
finley::Assemble_NodeCoordinates
void Assemble_NodeCoordinates(const NodeFile *nodes, escript::Data &x)
copies node coordinates into expanded Data object x
Definition: finley/src/Assemble_NodeCoordinates.cpp:48
escript::DataTypes::real_t
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:76
dudley::Assemble_jacobians_3D_M2D_E2D
void Assemble_jacobians_3D_M2D_E2D(const double *coordinates, int numQuad, dim_t numElements, int numNodes, const index_t *nodes, double *dTdX, double *absD, double *quadWeight, const index_t *elementId)
Definition: dudley/src/Assemble_jacobians.cpp:254
finley::util::addScatter
void addScatter(int len, const index_t *index, int numData, const Scalar *in, Scalar *out, index_t upperBound)
Definition: finley/src/Util.cpp:80
dudley::Assemble_LumpedSystem
void Assemble_LumpedSystem(const NodeFile *nodes, const ElementFile *elements, escript::Data &lumpedMat, const escript::Data &D, bool useHRZ)
Definition: dudley/src/Assemble_LumpedSystem.cpp:38
finley::Assemble_PDE_Points
void Assemble_PDE_Points(const AssembleParameters &p, const escript::Data &d_dirac, const escript::Data &y_dirac)
Definition: finley/src/Assemble_PDE_Points.cpp:70
dudley::DudleyException
Definition: DudleyException.h:37
FINLEY_REDUCED_FACE_ELEMENTS
#define FINLEY_REDUCED_FACE_ELEMENTS
Definition: Finley.h:71
escript::Data::requireWrite
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1243
dudley::Assemble_getNormal
void Assemble_getNormal(const NodeFile *nodes, const ElementFile *elements, escript::Data &normals)
calculates the normal vector at quadrature points on face elements
Definition: dudley/src/Assemble_getNormal.cpp:38
INDEX4
#define INDEX4(_X1_, _X2_, _X3_, _X4_, _N1_, _N2_, _N3_)
Definition: index.h:26
paso::SystemMatrix
this class holds a (distributed) stiffness matrix
Definition: SystemMatrix.h:60
DUDLEY_DEGREES_OF_FREEDOM
#define DUDLEY_DEGREES_OF_FREEDOM
Definition: Dudley.h:53
finley::Assemble_integrate
void Assemble_integrate(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, Scalar *integrals)
integrates data on quadrature points
Definition: finley/src/Assemble_integrate.cpp:48
dudley::NodeFile
Definition: dudley/src/NodeFile.h:38
dudley::Nodes
Definition: Dudley.h:65
paso::SystemMatrix::col_distribution
escript::Distribution_ptr col_distribution
Definition: SystemMatrix.h:333
MATRIX_FORMAT_CSC
#define MATRIX_FORMAT_CSC
Definition: Paso.h:62
FINLEY_REDUCED_ELEMENTS
#define FINLEY_REDUCED_ELEMENTS
Definition: Finley.h:70
dudley::Assemble_CopyElementData
void Assemble_CopyElementData(const ElementFile *elements, escript::Data &out, const escript::Data &in)
copies data between different types of elements
Definition: dudley/src/Assemble_CopyElementData.cpp:39
FINLEY_REDUCED_CONTACT_ELEMENTS_1
#define FINLEY_REDUCED_CONTACT_ELEMENTS_1
Definition: Finley.h:72
INDEX2
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:22
dudley::Assemble_addToSystemMatrix< cplx_t >
void Assemble_addToSystemMatrix< cplx_t >(escript::AbstractSystemMatrix *S, const std::vector< index_t > &Nodes, int numEq, const std::vector< cplx_t > &array)
Definition: dudley/src/Assemble_addToSystemMatrix.cpp:90
dudley::NodeFile::borrowTargetDegreesOfFreedom
const index_t * borrowTargetDegreesOfFreedom() const
returns the mapping from local degrees of freedom to a target
Definition: dudley/src/NodeFile.h:233
finley::setNumSamplesError
void setNumSamplesError(const char *c, int n0, int n1)
Definition: finley/src/Assemble_PDE.cpp:96
escript::Data::getSampleDataRO
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1988
finley::Assemble_AverageElementData
void Assemble_AverageElementData(const ElementFile *elements, escript::Data &out, const escript::Data &in)
averages data
Definition: finley/src/Assemble_AverageElementData.cpp:47
dudley::Assemble_interpolate
void Assemble_interpolate(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, escript::Data &output)
interpolates nodal data in a data array onto elements (=integration points)
Definition: dudley/src/Assemble_interpolate.cpp:39
paso::Coupler
Definition: Coupler.h:54
escript::Data::getDataPointShape
const DataTypes::ShapeType & getDataPointShape() const
Return a reference to the data point shape.
Definition: Data.h:704
escript::NotImplementedError
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:91
dudley::DTDV_3D
static const double DTDV_3D[4][3]
Definition: ShapeTable.h:55
FINLEY_NODES
#define FINLEY_NODES
Definition: Finley.h:62
finley::util::smallMatMult
void smallMatMult(int A1, int A2, double *A, int B2, const std::vector< double > &B, const std::vector< double > &C)
multiplies two matrices: A(1:A1,1:A2) := B(1:A1,1:B2)*C(1:B2,1:A2)
Definition: finley/src/Util.cpp:99
escript::Data::getNumberOfTaggedValues
size_t getNumberOfTaggedValues() const
For tagged Data returns the number of tags with values. For non-tagged data will return 0 (even Data ...
Definition: Data.cpp:5863
escript::DataTypes::DataVectorAlt::data
ElementType * data()
Definition: DataVectorAlt.h:225
dudley::Assemble_AverageElementData
void Assemble_AverageElementData(const ElementFile *elements, escript::Data &out, const escript::Data &in)
averages data
Definition: dudley/src/Assemble_AverageElementData.cpp:42
finley::Assemble_jacobians_2D_M1D_E1D
void Assemble_jacobians_2D_M1D_E1D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:152
finley::Assemble_jacobians_1D
void Assemble_jacobians_1D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:62
finley::setShapeError
void setShapeError(const char *c, int num, const int *dims)
Definition: finley/src/Assemble_PDE.cpp:105
finley::const_ReferenceElement_ptr
boost::shared_ptr< const ReferenceElement > const_ReferenceElement_ptr
Definition: ReferenceElements.h:212
DUDLEY_NODES
#define DUDLEY_NODES
Definition: Dudley.h:54
dudley::Assemble_PDE_Single_3D
void Assemble_PDE_Single_3D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: dudley/src/Assemble_PDE_Single_3D.cpp:74
finley::Assemble_PDE_System_2D
void Assemble_PDE_System_2D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: finley/src/Assemble_PDE_System_2D.cpp:80
INDEX5
#define INDEX5(_X1_, _X2_, _X3_, _X4_, _X5_, _N1_, _N2_, _N3_, _N4_)
Definition: index.h:28
dudley::Assemble_NodeCoordinates
void Assemble_NodeCoordinates(const NodeFile *nodes, escript::Data &x)
copies node coordinates into expanded Data object x
Definition: dudley/src/Assemble_NodeCoordinates.cpp:39
escript::Data::getDataPointSize
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1364
Util.h
finley::Assemble_addToSystemMatrix< real_t >
void Assemble_addToSystemMatrix< real_t >(escript::ASM_ptr S, int NN_Equa, const index_t *Nodes_Equa, int num_Equa, int NN_Sol, const index_t *Nodes_Sol, int num_Sol, const real_t *array)
Definition: finley/src/Assemble_addToSystemMatrix.cpp:61
finley::Assemble_jacobians_3D_M2D_E2D_C
void Assemble_jacobians_3D_M2D_E2D_C(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:745
dudley::Assemble_addToSystemMatrix
void Assemble_addToSystemMatrix(escript::AbstractSystemMatrix *S, const std::vector< index_t > &Nodes, int numEq, const std::vector< Scalar > &array)
finley::Assemble_interpolate
void Assemble_interpolate(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, escript::Data &output)
interpolates nodal data in a data array onto elements (=integration points)
Definition: finley/src/Assemble_interpolate.cpp:49
finley::Points
Definition: Finley.h:84
dudley::QuadNums
static const int QuadNums[4][2]
Definition: ShapeTable.h:87
escript::Data::getFunctionSpace
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:462
FINLEY_REDUCED_DEGREES_OF_FREEDOM
#define FINLEY_REDUCED_DEGREES_OF_FREEDOM
Definition: Finley.h:68
finley::NodeFile::getNumReducedDegreesOfFreedom
dim_t getNumReducedDegreesOfFreedom() const
returns the number of reduced order degrees of freedom (on this rank)
Definition: finley/src/NodeFile.h:270
MATRIX_FORMAT_OFFSET1
#define MATRIX_FORMAT_OFFSET1
Definition: Paso.h:64
dudley::DTDV_2D
static const double DTDV_2D[3 *3][2]
Definition: ShapeTable.h:49
finley::Assemble_PDE_Single_2D
void Assemble_PDE_Single_2D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: finley/src/Assemble_PDE_Single_2D.cpp:74
finley::Assemble_jacobians_3D_M2D_E3D_C
void Assemble_jacobians_3D_M2D_E3D_C(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:545
paso::util::copy
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:113
dudley::Assemble_PDE_System_3D
void Assemble_PDE_System_3D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: dudley/src/Assemble_PDE_System_3D.cpp:80
finley::ElementFile::numElements
dim_t numElements
number of elements
Definition: finley/src/ElementFile.h:134
dudley
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:32
finley::Assemble_jacobians_3D
void Assemble_jacobians_3D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:388
dudley::getQuadShape
bool getQuadShape(dim_t dim, bool reduced, const double **shapearr)
Definition: ShapeTable.cpp:40
dudley::Assemble_getSize
void Assemble_getSize(const NodeFile *nodes, const ElementFile *elements, escript::Data &size)
Definition: dudley/src/Assemble_getSize.cpp:37
escript::Data
Data represents a collection of datapoints.
Definition: Data.h:63
dudley::DTDV_1D
static const double DTDV_1D[2][2]
Definition: ShapeTable.h:46
dudley::Assemble_jacobians_2D
void Assemble_jacobians_2D(const double *coordinates, int numQuad, dim_t numElements, int numNodes, const index_t *nodes, double *dTdX, double *absD, double *quadWeight, const index_t *elementId)
Definition: dudley/src/Assemble_jacobians.cpp:55
finley::Assemble_CopyElementData
void Assemble_CopyElementData(const ElementFile *elements, escript::Data &out, const escript::Data &in)
copies data between different types of elements
Definition: finley/src/Assemble_CopyElementData.cpp:45
INDEX3
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:24
escript::DataTypes::dim_t
index_t dim_t
Definition: DataTypes.h:90
finley::util::normalVector
void normalVector(int len, int dim, int dim1, const double *A, double *Normal)
Definition: finley/src/Util.cpp:212
escript::DataTypes::ShapeType
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:68
dudley::Assemble_jacobians_3D
void Assemble_jacobians_3D(const double *coordinates, int numQuad, dim_t numElements, int numNodes, const index_t *nodes, double *dTdX, double *abs_D, double *quadWeight, const index_t *elementId)
Definition: dudley/src/Assemble_jacobians.cpp:179
paso::SystemMatrix::type
SystemMatrixType type
Definition: SystemMatrix.h:322
FINLEY_FACE_ELEMENTS
#define FINLEY_FACE_ELEMENTS
Definition: Finley.h:64
escript::AbstractSystemMatrix
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:55
dudley::ElementFile
Definition: dudley/src/ElementFile.h:64
dudley::hasReducedIntegrationOrder
bool hasReducedIntegrationOrder(const escript::Data &in)
Definition: Dudley.h:73
escript::Data::getSampleDataRW
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1953
paso::SystemMatrix::mainBlock
SparseMatrix_ptr mainBlock
main block
Definition: SystemMatrix.h:340
paso::Coupler_ptr
boost::shared_ptr< Coupler< T > > Coupler_ptr
Definition: Coupler.h:55
finley::Assemble_jacobians_3D_M2D_E3D
void Assemble_jacobians_3D_M2D_E3D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:464
FINLEY_DEGREES_OF_FREEDOM
#define FINLEY_DEGREES_OF_FREEDOM
Definition: Finley.h:61
finley::util::hasReducedIntegrationOrder
bool hasReducedIntegrationOrder(const escript::Data &in)
returns true if the data object is defined on reduced element types
Definition: finley/src/Util.h:62
dudley::Assemble_PDE_System_2D
void Assemble_PDE_System_2D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: dudley/src/Assemble_PDE_System_2D.cpp:80
finley::Assemble_addToSystemMatrix
void Assemble_addToSystemMatrix(escript::ASM_ptr S, int NN_Equa, const index_t *Nodes_Equa, int num_Equa, int NN_Sol, const index_t *Nodes_Sol, int num_Sol, const Scalar *array)
FINLEY_ELEMENTS
#define FINLEY_ELEMENTS
Definition: Finley.h:63
paso::SystemMatrix::row_coupleBlock
SparseMatrix_ptr row_coupleBlock
coupling to neighbouring processors (col - row)
Definition: SystemMatrix.h:344
escript::Data::isDataPointShapeEqual
bool isDataPointShapeEqual(int rank, const int *dimensions) const
Returns true if the shape matches the vector (dimensions[0],..., dimensions[rank-1])....
Definition: Data.h:566
finley::util::gather
void gather(int len, const index_t *index, int numData, const double *in, double *out)
Definition: finley/src/Util.cpp:69
DUDLEY_REDUCED_ELEMENTS
#define DUDLEY_REDUCED_ELEMENTS
Definition: Dudley.h:58
Assemble.h
escript::Data::isEmpty
bool isEmpty() const
Definition: Data.cpp:1136
escript::Data::getNumDataPoints
int getNumDataPoints() const
Return the number of data points.
Definition: Data.h:522
dudley::Assemble_CopyNodalData
void Assemble_CopyNodalData(const NodeFile *nodes, escript::Data &out, const escript::Data &in)
copies data between different types of nodal representations
Definition: dudley/src/Assemble_CopyNodalData.cpp:39
finley::Assemble_addToSystemMatrix< cplx_t >
void Assemble_addToSystemMatrix< cplx_t >(escript::ASM_ptr S, int NN_Equa, const index_t *Nodes_Equa, int num_Equa, int NN_Sol, const index_t *Nodes_Sol, int num_Sol, const cplx_t *array)
Definition: finley/src/Assemble_addToSystemMatrix.cpp:97
paso::SystemMatrix::col_block_size
dim_t col_block_size
Definition: SystemMatrix.h:329
escript::Data::numSamplesEqual
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:554
ShapeTable.h
DUDLEY_ELEMENTS
#define DUDLEY_ELEMENTS
Definition: Dudley.h:55
finley::Assemble_jacobians_2D
void Assemble_jacobians_2D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:99
dudley::Assemble_integrate< cplx_t >
template void Assemble_integrate< cplx_t >(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, std::vector< cplx_t > &out)
dudley::Assemble_jacobians_2D_M1D_E1D
void Assemble_jacobians_2D_M1D_E1D(const double *coordinates, int numQuad, dim_t numElements, int numNodes, const index_t *nodes, double *dTdX, double *absD, double *quadWeight, const index_t *elementId)
Definition: dudley/src/Assemble_jacobians.cpp:133
finley::Assemble_getSize
void Assemble_getSize(const NodeFile *nodes, const ElementFile *elements, escript::Data &size)
Definition: finley/src/Assemble_getSize.cpp:48
finley::Assemble_PDE_System_C
void Assemble_PDE_System_C(const AssembleParameters &p, const escript::Data &D, const escript::Data &Y)
Definition: Assemble_PDE_System_C.cpp:68
dudley::Assemble_integrate
void Assemble_integrate(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, std::vector< Scalar > &integrals)
integrates data on quadrature points
Definition: dudley/src/Assemble_integrate.cpp:41
dudley::Assemble_addToSystemMatrix< real_t >
void Assemble_addToSystemMatrix< real_t >(escript::AbstractSystemMatrix *S, const std::vector< index_t > &Nodes, int numEq, const std::vector< real_t > &array)
Definition: dudley/src/Assemble_addToSystemMatrix.cpp:61
paso::SystemMatrix::row_block_size
dim_t row_block_size
Definition: SystemMatrix.h:328
DUDLEY_REDUCED_FACE_ELEMENTS
#define DUDLEY_REDUCED_FACE_ELEMENTS
Definition: Dudley.h:59
dudley::AssembleParameters::AssembleParameters
AssembleParameters(const NodeFile *nodes, const ElementFile *ef, escript::ASM_ptr sm, escript::Data &rhs, bool reducedOrder)
Definition: dudley/src/Assemble_getAssembleParameters.cpp:33
paso::SystemMatrix::pattern
SystemMatrixPattern_ptr pattern
Definition: SystemMatrix.h:323
dudley::util::normalVector
void normalVector(int len, int dim, int dim1, const double *A, double *Normal)
Definition: dudley/src/Util.cpp:135
dudley::Assemble_PDE_Points
void Assemble_PDE_Points(const AssembleParameters &p, const escript::Data &d_dirac, const escript::Data &y_dirac)
Definition: dudley/src/Assemble_PDE_Points.cpp:73
finley::Assemble_gradient
void Assemble_gradient(const NodeFile *nodes, const ElementFile *elements, escript::Data &gradient, const escript::Data &data)
Definition: finley/src/Assemble_gradient.cpp:49
finley::Assemble_LumpedSystem
void Assemble_LumpedSystem(const NodeFile *nodes, const ElementFile *elements, escript::Data &lumpedMat, const escript::Data &D, bool useHRZ)
Definition: finley/src/Assemble_LumpedSystem.cpp:54
escript::DataTypes::index_t
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:85
paso::SystemMatrix::logical_row_block_size
dim_t logical_row_block_size
Definition: SystemMatrix.h:325
finley::NodeFile
Definition: finley/src/NodeFile.h:40
dudley::util::smallMatMult
void smallMatMult(int A1, int A2, double *A, int B2, const double *B, const double *C)
multiplies two matrices: A(1:A1,1:A2) := B(1:A1,1:B2)*C(1:B2,1:A2)
Definition: dudley/src/Util.cpp:99
finley::ElementFile::borrowJacobians
ElementFile_Jacobians * borrowJacobians(const NodeFile *, bool, bool) const
Definition: finley/src/ElementFile_jacobians.cpp:53
finley::Assemble_PDE_System_3D
void Assemble_PDE_System_3D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: finley/src/Assemble_PDE_System_3D.cpp:80
COMPDXDV1
#define COMPDXDV1(P)
finley::Assemble_jacobians_2D_M1D_E2D
void Assemble_jacobians_2D_M1D_E2D(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:258
Util.h
finley::Assemble_PDE
void Assemble_PDE(const NodeFile *nodes, const ElementFile *elements, escript::ASM_ptr S, escript::Data &F, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: finley/src/Assemble_PDE.cpp:124
FINLEY_REDUCED_CONTACT_ELEMENTS_2
#define FINLEY_REDUCED_CONTACT_ELEMENTS_2
Definition: Finley.h:73
finley::AssembleParameters::AssembleParameters
AssembleParameters(const NodeFile *nodes, const ElementFile *ef, escript::ASM_ptr sm, escript::Data &rhs, bool reducedOrder)
Definition: finley/src/Assemble_getAssembleParameters.cpp:32
escript::FunctionSpace::getTypeCode
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:94
COMPDXDV0
#define COMPDXDV0(P)
escript::Data::isLazy
bool isLazy() const
Return true if this Data is lazy.
Definition: Data.cpp:1150
DIM
#define DIM
dudley::Assemble_integrate< real_t >
template void Assemble_integrate< real_t >(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, std::vector< real_t > &out)
finley::ElementFile
Definition: finley/src/ElementFile.h:74
finley::Assemble_jacobians_2D_M1D_E1D_C
void Assemble_jacobians_2D_M1D_E1D_C(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:198
dudley::Assemble_gradient
void Assemble_gradient(const NodeFile *nodes, const ElementFile *elements, escript::Data &gradient, const escript::Data &data)
Definition: dudley/src/Assemble_gradient.cpp:41
FINLEY_REDUCED_NODES
#define FINLEY_REDUCED_NODES
Definition: Finley.h:69
finley::Assemble_getNormal
void Assemble_getNormal(const NodeFile *nodes, const ElementFile *elements, escript::Data &normals)
calculates the normal vector at quadrature points on face elements
Definition: finley/src/Assemble_getNormal.cpp:48
finley::NodeFile::borrowTargetDegreesOfFreedom
const index_t * borrowTargetDegreesOfFreedom() const
Definition: finley/src/NodeFile.h:315
finley::NodeFile::getNumDegreesOfFreedom
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition: finley/src/NodeFile.h:265
finley::const_ShapeFunction_ptr
boost::shared_ptr< const ShapeFunction > const_ShapeFunction_ptr
Definition: ShapeFunctions.h:99
escript::Data::actsExpanded
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1122
finley::Assemble_PDE_Single_C
void Assemble_PDE_Single_C(const AssembleParameters &p, const escript::Data &D, const escript::Data &Y)
Definition: Assemble_PDE_Single_C.cpp:66
dudley::Assemble_PDE
void Assemble_PDE(const NodeFile *nodes, const ElementFile *elements, escript::ASM_ptr S, escript::Data &F, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: dudley/src/Assemble_PDE.cpp:122
escript::getMPIRankWorld
int getMPIRankWorld()
returns the MPI processor number within MPI_COMM_WORLD
Definition: Utils.cpp:103
finley::NodeFile::borrowTargetReducedDegreesOfFreedom
const index_t * borrowTargetReducedDegreesOfFreedom() const
Definition: finley/src/NodeFile.h:320
dudley::util::gather
void gather(int len, const index_t *index, int numData, const double *in, double *out)
Definition: dudley/src/Util.cpp:69
DUDLEY_POINTS
#define DUDLEY_POINTS
Definition: Dudley.h:57
S
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:136
finley::Assemble_jacobians_2D_M1D_E2D_C
void Assemble_jacobians_2D_M1D_E2D_C(const double *coordinates, int numQuad, const double *QuadWeights, int numShape, dim_t numElements, int numNodes, const index_t *nodes, const double *DSDv, int numTest, const double *DTDv, double *dTdX, double *volume, const index_t *elementId)
Definition: finley/src/Assemble_jacobians.cpp:312
escript::Data::getExpandedVectorReference
DataTypes::RealVectorType & getExpandedVectorReference(DataTypes::real_t dummy=0)
Ensures that the Data is expanded and returns its underlying vector Does not check for exclusive writ...
Definition: Data.cpp:5845
escript::ASM_ptr
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:45
paso::SystemMatrix::block_size
dim_t block_size
Definition: SystemMatrix.h:330
escript::DataTypes::cplx_t
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:79
finley::Assemble_CopyNodalData
void Assemble_CopyNodalData(const NodeFile *nodes, escript::Data &out, const escript::Data &in)
copies data between different types of nodal representations
Definition: finley/src/Assemble_CopyNodalData.cpp:39
escript::Scalar
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:62
finley
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:32
dudley::NodeFile::getNumDegreesOfFreedom
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition: dudley/src/NodeFile.h:208
dudley::setNumSamplesError
void setNumSamplesError(const char *c, int n0, int n1)
Definition: dudley/src/Assemble_PDE.cpp:94
escript::ValueError
An exception class that signals an invalid argument value.
Definition: EsysException.h:101
DUDLEY_FACE_ELEMENTS
#define DUDLEY_FACE_ELEMENTS
Definition: Dudley.h:56
finley::Assemble_PDE_System_1D
void Assemble_PDE_System_1D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: Assemble_PDE_System_1D.cpp:80
dudley::Assemble_PDE_Single_2D
void Assemble_PDE_Single_2D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: dudley/src/Assemble_PDE_Single_2D.cpp:74
FINLEY_CONTACT_ELEMENTS_2
#define FINLEY_CONTACT_ELEMENTS_2
Definition: Finley.h:67
Assemble.h
dudley::util::addScatter
void addScatter(int len, const index_t *index, int numData, const Scalar *in, Scalar *out, index_t upperBound)
Definition: dudley/src/Util.cpp:80
finley::Assemble_PDE_Single_3D
void Assemble_PDE_Single_3D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: finley/src/Assemble_PDE_Single_3D.cpp:74
FINLEY_CONTACT_ELEMENTS_1
#define FINLEY_CONTACT_ELEMENTS_1
Definition: Finley.h:66
paso::SystemMatrix::row_distribution
escript::Distribution_ptr row_distribution
Definition: SystemMatrix.h:332
escript::DataTypes::IndexVector
std::vector< index_t > IndexVector
Definition: DataTypes.h:88
dudley::setShapeError
void setShapeError(const char *c, int num, const int *dims)
Definition: dudley/src/Assemble_PDE.cpp:103
INDEX6
#define INDEX6(_X1_, _X2_, _X3_, _X4_, _X5_, _X6_, _N1_, _N2_, _N3_, _N4_, _N5_)
Definition: index.h:30
finley::ElementFile::numNodes
int numNodes
number of nodes per element
Definition: finley/src/ElementFile.h:150
finley::Assemble_PDE_Single_1D
void Assemble_PDE_Single_1D(const AssembleParameters &p, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: Assemble_PDE_Single_1D.cpp:74
paso::SystemMatrix::col_coupleBlock
SparseMatrix_ptr col_coupleBlock
coupling to neighbouring processors (row - col)
Definition: SystemMatrix.h:342