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18 #ifndef __RIPLEY_MULTIBRICK_H__
19 #define __RIPLEY_MULTIBRICK_H__
21 #include <ripley/Brick.h>
31 template<
class Scalar>
friend class DefaultAssembler3D;
32 friend class WaveAssembler3D;
33 friend class LameAssembler3D;
43 MultiBrick(
dim_t n0,
dim_t n1,
dim_t n2,
double x0,
double y0,
double z0,
44 double x1,
double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
45 const std::vector<double>& points = std::vector<double>(),
46 const std::vector<int>& tags = std::vector<int>(),
49 unsigned int subdivisions = 1
71 void validateInterpolationAcross(
int fsType_source,
78 virtual std::string getDescription()
const;
90 void dump(
const std::string& filename)
const;
108 std::string filename,
109 int byteOrder,
int dataType)
const;
115 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
121 virtual bool ownSample(
int fsType,
index_t id)
const;
143 virtual void Print_Mesh_Info(
const bool full=
false)
const;
149 virtual unsigned int getNumSubdivisionsPerElement()
const {
return m_subdivisions; }
156 virtual const dim_t* getNumFacesPerBoundary()
const {
return m_faceCount; }
162 virtual IndexVector getNodeDistribution()
const {
return m_nodeDistribution; }
168 virtual const int* getNumSubdivisionsPerDim()
const {
return m_NX; }
175 virtual RankVector getOwnerVector(
int fsType)
const;
178 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
180 virtual void interpolateNodesToElementsFiner(
const escript::Data& source,
escript::Data& target,
const MultiBrick& other)
const;
188 virtual void populateSampleIds();
189 virtual std::vector<IndexVector> getConnections(
bool includeShared)
const;
191 dim_t findNode(
const double *coords)
const;
193 const unsigned int m_subdivisions;
195 template <
typename S>
197 template <
typename S>
200 template <
typename S>
202 template <
typename S>
205 template <
typename S>
207 template <
typename S>
218 #endif // __RIPLEY_MULTIBRICK_H__
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: ripley/src/Brick.cpp:474
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:543
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1164
Definition: ripley/src/AbstractAssembler.h:25
virtual void interpolateNodesToNodesFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:142
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:785
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: ripley/src/Brick.h:331
MPI_Comm getMPIComm() const
returns the MPI communicator
Definition: ripley/src/RipleyDomain.h:170
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:76
int m_NX[3]
number of spatial subdivisions
Definition: ripley/src/Brick.h:316
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: MultiBrick.cpp:725
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1243
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:788
void validateInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target) const
Checks that the given interpolation is possible, throw RipleyExceptions if not.
Definition: MultiBrick.cpp:109
#define INDEX4(_X1_, _X2_, _X3_, _X4_, _N1_, _N2_, _N3_)
Definition: index.h:26
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:370
IndexVector m_faceId
Definition: ripley/src/Brick.h:342
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:789
dim_t m_ownNE[3]
number of own elements for this rank in each dimension
Definition: ripley/src/Brick.h:322
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:22
RipleyException exception class.
Definition: RipleyException.h:42
const_Domain_ptr getDomain() const
Return the domain.
Definition: Data.h:486
std::map< std::string, int > TagMap
Definition: Ripley.h:60
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:20
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1988
double m_dx[3]
grid spacings / cell sizes of domain
Definition: ripley/src/Brick.h:313
void interpolateReducedToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:223
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: MultiBrick.cpp:678
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: MultiBrick.cpp:597
virtual IndexVector getDiagonalIndices(bool upperOnly) const
returns the indices of the occupied matrix diagonals
Definition: MultiBrick.cpp:1104
virtual void populateSampleIds()
Definition: MultiBrick.cpp:1130
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: MultiBrick.cpp:717
virtual void interpolateReducedToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:205
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Brick.h:224
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: MultiBrick.cpp:1428
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:399
void interpolateElementsToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:541
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:791
void interpolateElementsToElementsCoarserWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:463
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: ripley/src/Brick.h:328
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: ripley/src/Brick.cpp:623
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1364
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1049
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:336
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:462
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Brick.h:319
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: MultiBrick.cpp:811
virtual void interpolateNodesToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:303
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:345
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:365
virtual std::string getDescription() const
returns a description for this domain
Definition: MultiBrick.cpp:673
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:787
std::vector< int > RankVector
Definition: Ripley.h:59
void interpolateNodesToNodesFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:160
Data represents a collection of datapoints.
Definition: Data.h:63
static dim_t nz
Definition: SparseMatrix_saveHB.cpp:50
int m_numDim
Definition: ripley/src/RipleyDomain.h:783
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:24
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: ripley/src/Brick.h:325
index_t dim_t
Definition: DataTypes.h:90
#define SECOND_QUAD
Definition: MultiBrick.cpp:26
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1953
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: MultiBrick.cpp:709
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:87
void interpolateReducedToReducedFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:277
double m_length[3]
side lengths of domain
Definition: ripley/src/Brick.h:310
const unsigned int m_subdivisions
Definition: MultiBrick.h:218
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: MultiBrick.cpp:732
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:62
double m_origin[3]
origin of domain
Definition: ripley/src/Brick.h:307
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:116
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: MultiBrick.cpp:701
~MultiBrick()
Destructor.
Definition: MultiBrick.cpp:104
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: MultiBrick.cpp:758
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Brick.h:176
virtual void interpolateElementsToElementsCoarser(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:445
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: MultiBrick.cpp:1087
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1268
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:225
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: ripley/src/Brick.cpp:942
void interpolateNodesToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:321
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:81
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:159
IndexVector m_dofMap
Definition: ripley/src/Brick.h:348
virtual void interpolateElementsToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:523
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:41
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: ripley/src/Brick.cpp:1278
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:411
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: MultiBrick.cpp:990
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:386
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:85
std::vector< index_t > IndexVector
Definition: Ripley.h:57
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: MultiBrick.h:41
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:405
virtual std::string functionSpaceTypeAsString(int fsType) const
returns a description for the given function space type code
Definition: ripley/src/RipleyDomain.cpp:124
IndexVector m_nodeId
Definition: ripley/src/Brick.h:340
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
Definition: ripley/src/Brick.cpp:3277
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: ripley/src/Brick.cpp:75
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:94
void populateDofMap()
Definition: ripley/src/Brick.cpp:3063
IndexVector m_elementId
Definition: ripley/src/Brick.h:341
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:55
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:138
static dim_t M
Definition: SparseMatrix_saveHB.cpp:50
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: ripley/src/Brick.cpp:647
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Brick.h:170
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:142
Base class for all escript domains.
Definition: AbstractDomain.h:62
#define FIRST_QUAD
Definition: MultiBrick.cpp:25
#define globalNodeId(x, y, z)
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:136
dim_t m_gNE[3]
total number of elements in each dimension
Definition: ripley/src/Brick.h:304
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:79
std::vector< DiracPoint > m_diracPoints
Definition: ripley/src/RipleyDomain.h:790
virtual unsigned int getNumSubdivisionsPerElement() const
returns the number of times each root element has been subdivided
Definition: MultiBrick.h:174
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: MultiBrick.h:193
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:78
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:856
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:339
virtual std::vector< IndexVector > getConnections(bool includeShared) const
returns occupied matrix column indices for all matrix rows
Definition: MultiBrick.cpp:1397
MultiBrick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr(), unsigned int subdivisions=1)
creates a hexagonal mesh with n0 x n1 x n2 elements over the brick [x0,x1] x [y0,y1] x [z0,...
Definition: MultiBrick.cpp:53
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: MultiBrick.cpp:693
virtual void interpolateReducedToReducedFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:257
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: MultiBrick.cpp:1435