Class Hierarchy
- java.lang.Object
- picard.illumina.ClusterDataToSamConverter
- picard.illumina.CollectIlluminaLaneMetrics.IlluminaLaneMetricsCollector
- picard.cmdline.CommandLineProgram
- picard.illumina.CheckIlluminaDirectory
- picard.illumina.CollectIlluminaBasecallingMetrics
- picard.illumina.CollectIlluminaLaneMetrics
- picard.illumina.ExtractIlluminaBarcodes
- picard.illumina.IlluminaBasecallsToFastq
- picard.illumina.IlluminaBasecallsToSam
- picard.illumina.MarkIlluminaAdapters
- picard.illumina.ExtractIlluminaBarcodes.PerTileBarcodeExtractor (implements java.lang.Runnable)
- picard.illumina.ExtractIlluminaBarcodes.PerTileBarcodeExtractor.BarcodeMatch
- picard.illumina.IlluminaBasecallsConverter<CLUSTER_OUTPUT_RECORD>
- picard.illumina.LanePhasingMetricsCollector
- htsjdk.samtools.metrics.MetricBase
- picard.illumina.ExtractIlluminaBarcodes.BarcodeMetric
- picard.illumina.IlluminaBasecallingMetrics
- picard.illumina.IlluminaLaneMetrics
- picard.illumina.IlluminaPhasingMetrics
- picard.illumina.NewIlluminaBasecallsConverter<CLUSTER_OUTPUT_RECORD>
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- picard.illumina.DistanceMetric (implements org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum)
- picard.illumina.IlluminaBasecallsToFastq.ReadNameFormat
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)