ArraysControlInfo |
A simple class to store names and counts for the the Control Information fields that are stored in an Illumina GTC file.
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Build37ExtendedIlluminaManifest |
A class to represent an 'Extended' Illumina Manifest file.
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Build37ExtendedIlluminaManifestRecord |
A class to represent a record (line) from an Extended Illumina Manifest [Assay] entry
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CompareGtcFiles |
A simple tool to compare two Illumina GTC files.
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IlluminaAdpcFileWriter |
A class to encompass writing an Illumina adpc.bin file.
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IlluminaAdpcFileWriter.Record |
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IlluminaManifest |
A class to represent an Illumina Manifest file.
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IlluminaManifestRecord |
A class to represent a record (line) from an Illumina Manifest [Assay] entry
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InfiniumDataFile |
A class to provide methods for accessing Illumina Infinium Data Files.
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InfiniumEGTFile |
A class to parse the contents of an Illumina Infinium cluster (EGT) file
A cluster file contains information about the clustering information used in mapping red / green intensity information
to genotype calls
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InfiniumFileTOC |
A class to encapsulate the table of contents for an Illumina Infinium Data Files.
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InfiniumGTCFile |
A class to parse the contents of an Illumina Infinium genotype (GTC) file
A GTC file is the output of Illumina's genotype calling software (either Autocall or Autoconvert) and
contains genotype calls, confidence scores, basecalls and raw intensities for all calls made on the chip.
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InfiniumGTCRecord |
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InfiniumNormalizationManifest |
A class to parse the contents of an Illumina Infinium Normalization Manifest file
An Illumina Infinium Normalization Manifest file contains a subset of the information contained in the Illumina
Manifest file in addition to the normalization ID which is needed for normalizating intensities in GtcToVcf
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InfiniumTransformation |
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InfiniumVcfFields |
A class to store fields that are specific to a VCF generated from an Illumina GTC file.
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