ProteoWizard
pwiz
analysis
chromatogram_processing
ChromatogramList_SavitzkyGolaySmoother.hpp
Go to the documentation of this file.
1
//
2
// $Id$
3
//
4
//
5
// Original author: Eric Purser <Eric.Purser .@. Vanderbilt.edu>
6
//
7
// Copyright 2008 Spielberg Family Center for Applied Proteomics
8
// Cedars-Sinai Medical Center, Los Angeles, California 90048
9
//
10
// Licensed under the Apache License, Version 2.0 (the "License");
11
// you may not use this file except in compliance with the License.
12
// You may obtain a copy of the License at
13
//
14
// http://www.apache.org/licenses/LICENSE-2.0
15
//
16
// Unless required by applicable law or agreed to in writing, software
17
// distributed under the License is distributed on an "AS IS" BASIS,
18
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19
// See the License for the specific language governing permissions and
20
// limitations under the License.
21
//
22
23
24
#ifndef _CHROMATOGRAMLIST_SAVITZKYGOLAYSMOOTHER_HPP_
25
#define _CHROMATOGRAMLIST_SAVITZKYGOLAYSMOOTHER_HPP_
26
27
28
#include "
pwiz/utility/misc/Export.hpp
"
29
#include "
pwiz/utility/misc/IntegerSet.hpp
"
30
#include "
ChromatogramListWrapper.hpp
"
31
32
33
namespace
pwiz
{
34
namespace
analysis {
35
36
37
/// ChromatogramList implementation to return native centroided chromatogram data
38
class
PWIZ_API_DECL
ChromatogramList_SavitzkyGolaySmoother
:
public
ChromatogramListWrapper
39
{
40
public
:
41
42
ChromatogramList_SavitzkyGolaySmoother
(
const
msdata::ChromatogramListPtr
& inner,
43
const
util::IntegerSet
& msLevelsToSmooth);
44
45
static
bool
accept(
const
msdata::ChromatogramListPtr
& inner);
46
47
virtual
msdata::ChromatogramPtr
chromatogram(
size_t
index,
bool
getBinaryData =
false
)
const
;
48
49
private
:
50
const
util::IntegerSet
msLevelsToSmooth_
;
51
};
52
53
54
}
// namespace analysis
55
}
// namespace pwiz
56
57
58
#endif // _CHROMATOGRAMLIST_SAVITZKYGOLAYSMOOTHER_HPP_
59
pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother::msLevelsToSmooth_
const util::IntegerSet msLevelsToSmooth_
Definition:
ChromatogramList_SavitzkyGolaySmoother.hpp:50
pwiz
Definition:
ChromatogramList_Filter.hpp:36
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition:
Export.hpp:32
ChromatogramListWrapper.hpp
Export.hpp
pwiz::msdata::ChromatogramListPtr
boost::shared_ptr< ChromatogramList > ChromatogramListPtr
Definition:
MSData.hpp:785
pwiz::analysis::ChromatogramList_SavitzkyGolaySmoother
ChromatogramList implementation to return native centroided chromatogram data.
Definition:
ChromatogramList_SavitzkyGolaySmoother.hpp:38
pwiz::analysis::ChromatogramListWrapper
Inheritable pass-through implementation for wrapping a ChromatogramList.
Definition:
ChromatogramListWrapper.hpp:38
pwiz::msdata::ChromatogramPtr
boost::shared_ptr< Chromatogram > ChromatogramPtr
Definition:
MSData.hpp:624
IntegerSet.hpp
pwiz::util::IntegerSet
a virtual container of integers, accessible via an iterator interface, stored as union of intervals
Definition:
IntegerSet.hpp:37
Generated by
1.8.17