ProteoWizard
pwiz
analysis
common
WhittakerSmoother.hpp
Go to the documentation of this file.
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//
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// $Id$
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//
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//
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// Original author: Matt Chambers <matt.chambers <a.t> vanderbilt.edu>
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//
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// Copyright 2008 Vanderbilt University - Nashville, TN 37232
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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//
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// Derived from ACS article:
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// A Perfect Smoother
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// Paul H. C. Eilers
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// Anal. Chem., 2003, 75 (14), 3631-3636 • DOI: 10.1021/ac034173t
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#ifndef _WHITTAKERSMOOTHER_HPP_
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#define _WHITTAKERSMOOTHER_HPP_
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#include "
Smoother.hpp
"
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namespace
pwiz
{
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namespace
analysis {
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struct
PWIZ_API_DECL
WhittakerSmoother
:
public
Smoother
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{
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WhittakerSmoother
(
double
lambdaCoefficient);
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/// smooth y values to existing vectors using Whittaker algorithm;
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/// note: in the case of sparse vectors, smoothing may fill in samples not present
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/// in the original data, so make sure to check the size of the output vectors
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virtual
void
smooth(
const
std::vector<double>&
x
,
const
std::vector<double>&
y
,
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std::vector<double>& xSmoothed, std::vector<double>& ySmoothed);
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/// smooth y values and copy back to the input vectors using Whittaker algorithm;
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/// note: in the case of sparse vectors, smoothing may fill in samples not present
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/// in the original data, so make sure to check the size of the output vectors
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virtual
void
smooth_copy(std::vector<double>&
x
, std::vector<double>&
y
);
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private
:
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double
lambda
;
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};
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}
// namespace analysis
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}
// namespace pwiz
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#endif // _WHITTAKERSMOOTHER_HPP_
pwiz::analysis::WhittakerSmoother::lambda
double lambda
Definition:
WhittakerSmoother.hpp:56
pwiz
Definition:
ChromatogramList_Filter.hpp:36
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition:
Export.hpp:32
y
KernelTraitsBase< Kernel >::space_type::ordinate_type y
Definition:
MatchedFilter.hpp:143
Smoother.hpp
x
KernelTraitsBase< Kernel >::space_type::abscissa_type x
Definition:
MatchedFilter.hpp:142
pwiz::analysis::Smoother
interface for a one-dimensional smoothing algorithm
Definition:
Smoother.hpp:37
pwiz::analysis::WhittakerSmoother
Definition:
WhittakerSmoother.hpp:40
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