---
Name: TopHat
URL: https://ccb.jhu.edu/software/tophat/
Description: >
    TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns
    RNA-Seq reads to mammalian-sized genomes.
---

The TopHat module parses results generated by
[TopHat](https://ccb.jhu.edu/software/tophat/),
a fast splice junction mapper for RNA-Seq reads that aligns
RNA-Seq reads to mammalian-sized genomes.