libSBML Python API
5.10.0
|
Variables | |
AllowedAttributesOnAlgRule = _libsbml.AllowedAttributesOnAlgRule | |
AllowedAttributesOnAssignRule = _libsbml.AllowedAttributesOnAssignRule | |
AllowedAttributesOnCompartment = _libsbml.AllowedAttributesOnCompartment | |
AllowedAttributesOnConstraint = _libsbml.AllowedAttributesOnConstraint | |
AllowedAttributesOnDelay = _libsbml.AllowedAttributesOnDelay | |
AllowedAttributesOnEvent = _libsbml.AllowedAttributesOnEvent | |
AllowedAttributesOnEventAssignment = _libsbml.AllowedAttributesOnEventAssignment | |
AllowedAttributesOnFunc = _libsbml.AllowedAttributesOnFunc | |
AllowedAttributesOnInitialAssign = _libsbml.AllowedAttributesOnInitialAssign | |
AllowedAttributesOnKineticLaw = _libsbml.AllowedAttributesOnKineticLaw | |
AllowedAttributesOnListOfComps = _libsbml.AllowedAttributesOnListOfComps | |
AllowedAttributesOnListOfConstraints = _libsbml.AllowedAttributesOnListOfConstraints | |
AllowedAttributesOnListOfEventAssign = _libsbml.AllowedAttributesOnListOfEventAssign | |
AllowedAttributesOnListOfEvents = _libsbml.AllowedAttributesOnListOfEvents | |
AllowedAttributesOnListOfFuncs = _libsbml.AllowedAttributesOnListOfFuncs | |
AllowedAttributesOnListOfInitAssign = _libsbml.AllowedAttributesOnListOfInitAssign | |
AllowedAttributesOnListOfLocalParam = _libsbml.AllowedAttributesOnListOfLocalParam | |
AllowedAttributesOnListOfMods = _libsbml.AllowedAttributesOnListOfMods | |
AllowedAttributesOnListOfParams = _libsbml.AllowedAttributesOnListOfParams | |
AllowedAttributesOnListOfReactions = _libsbml.AllowedAttributesOnListOfReactions | |
AllowedAttributesOnListOfRules = _libsbml.AllowedAttributesOnListOfRules | |
AllowedAttributesOnListOfSpecies = _libsbml.AllowedAttributesOnListOfSpecies | |
AllowedAttributesOnListOfSpeciesRef = _libsbml.AllowedAttributesOnListOfSpeciesRef | |
AllowedAttributesOnListOfUnitDefs = _libsbml.AllowedAttributesOnListOfUnitDefs | |
AllowedAttributesOnListOfUnits = _libsbml.AllowedAttributesOnListOfUnits | |
AllowedAttributesOnLocalParameter = _libsbml.AllowedAttributesOnLocalParameter | |
AllowedAttributesOnModel = _libsbml.AllowedAttributesOnModel | |
AllowedAttributesOnModifier = _libsbml.AllowedAttributesOnModifier | |
AllowedAttributesOnParameter = _libsbml.AllowedAttributesOnParameter | |
AllowedAttributesOnPriority = _libsbml.AllowedAttributesOnPriority | |
AllowedAttributesOnRateRule = _libsbml.AllowedAttributesOnRateRule | |
AllowedAttributesOnReaction = _libsbml.AllowedAttributesOnReaction | |
AllowedAttributesOnSBML = _libsbml.AllowedAttributesOnSBML | |
AllowedAttributesOnSpecies = _libsbml.AllowedAttributesOnSpecies | |
AllowedAttributesOnSpeciesReference = _libsbml.AllowedAttributesOnSpeciesReference | |
AllowedAttributesOnTrigger = _libsbml.AllowedAttributesOnTrigger | |
AllowedAttributesOnUnit = _libsbml.AllowedAttributesOnUnit | |
AllowedAttributesOnUnitDefinition = _libsbml.AllowedAttributesOnUnitDefinition | |
AND_ASSOCIATION = _libsbml.AND_ASSOCIATION | |
AnnotationNotElement = _libsbml.AnnotationNotElement | |
AnnotationNotesNotAllowedLevel1 = _libsbml.AnnotationNotesNotAllowedLevel1 | |
ApplyCiMustBeModelComponent = _libsbml.ApplyCiMustBeModelComponent | |
ApplyCiMustBeUserFunction = _libsbml.ApplyCiMustBeUserFunction | |
ArgsToEqNeedSameType = _libsbml.ArgsToEqNeedSameType | |
AssignmentToConstantEntity = _libsbml.AssignmentToConstantEntity | |
AssignRuleCompartmentMismatch = _libsbml.AssignRuleCompartmentMismatch | |
AssignRuleParameterMismatch = _libsbml.AssignRuleParameterMismatch | |
AssignRuleSpeciesMismatch = _libsbml.AssignRuleSpeciesMismatch | |
AssignRuleStoichiometryMismatch = _libsbml.AssignRuleStoichiometryMismatch | |
AST_CONSTANT_E = _libsbml.AST_CONSTANT_E | |
AST_CONSTANT_FALSE = _libsbml.AST_CONSTANT_FALSE | |
AST_CONSTANT_PI = _libsbml.AST_CONSTANT_PI | |
AST_CONSTANT_TRUE = _libsbml.AST_CONSTANT_TRUE | |
AST_CONSTRUCTOR_OTHERWISE = _libsbml.AST_CONSTRUCTOR_OTHERWISE | |
AST_CONSTRUCTOR_PIECE = _libsbml.AST_CONSTRUCTOR_PIECE | |
AST_DIVIDE = _libsbml.AST_DIVIDE | |
AST_FUNCTION = _libsbml.AST_FUNCTION | |
AST_FUNCTION_ABS = _libsbml.AST_FUNCTION_ABS | |
AST_FUNCTION_ARCCOS = _libsbml.AST_FUNCTION_ARCCOS | |
AST_FUNCTION_ARCCOSH = _libsbml.AST_FUNCTION_ARCCOSH | |
AST_FUNCTION_ARCCOT = _libsbml.AST_FUNCTION_ARCCOT | |
AST_FUNCTION_ARCCOTH = _libsbml.AST_FUNCTION_ARCCOTH | |
AST_FUNCTION_ARCCSC = _libsbml.AST_FUNCTION_ARCCSC | |
AST_FUNCTION_ARCCSCH = _libsbml.AST_FUNCTION_ARCCSCH | |
AST_FUNCTION_ARCSEC = _libsbml.AST_FUNCTION_ARCSEC | |
AST_FUNCTION_ARCSECH = _libsbml.AST_FUNCTION_ARCSECH | |
AST_FUNCTION_ARCSIN = _libsbml.AST_FUNCTION_ARCSIN | |
AST_FUNCTION_ARCSINH = _libsbml.AST_FUNCTION_ARCSINH | |
AST_FUNCTION_ARCTAN = _libsbml.AST_FUNCTION_ARCTAN | |
AST_FUNCTION_ARCTANH = _libsbml.AST_FUNCTION_ARCTANH | |
AST_FUNCTION_CEILING = _libsbml.AST_FUNCTION_CEILING | |
AST_FUNCTION_COS = _libsbml.AST_FUNCTION_COS | |
AST_FUNCTION_COSH = _libsbml.AST_FUNCTION_COSH | |
AST_FUNCTION_COT = _libsbml.AST_FUNCTION_COT | |
AST_FUNCTION_COTH = _libsbml.AST_FUNCTION_COTH | |
AST_FUNCTION_CSC = _libsbml.AST_FUNCTION_CSC | |
AST_FUNCTION_CSCH = _libsbml.AST_FUNCTION_CSCH | |
AST_FUNCTION_DELAY = _libsbml.AST_FUNCTION_DELAY | |
AST_FUNCTION_EXP = _libsbml.AST_FUNCTION_EXP | |
AST_FUNCTION_FACTORIAL = _libsbml.AST_FUNCTION_FACTORIAL | |
AST_FUNCTION_FLOOR = _libsbml.AST_FUNCTION_FLOOR | |
AST_FUNCTION_LN = _libsbml.AST_FUNCTION_LN | |
AST_FUNCTION_LOG = _libsbml.AST_FUNCTION_LOG | |
AST_FUNCTION_PIECEWISE = _libsbml.AST_FUNCTION_PIECEWISE | |
AST_FUNCTION_POWER = _libsbml.AST_FUNCTION_POWER | |
AST_FUNCTION_ROOT = _libsbml.AST_FUNCTION_ROOT | |
AST_FUNCTION_SEC = _libsbml.AST_FUNCTION_SEC | |
AST_FUNCTION_SECH = _libsbml.AST_FUNCTION_SECH | |
AST_FUNCTION_SIN = _libsbml.AST_FUNCTION_SIN | |
AST_FUNCTION_SINH = _libsbml.AST_FUNCTION_SINH | |
AST_FUNCTION_TAN = _libsbml.AST_FUNCTION_TAN | |
AST_FUNCTION_TANH = _libsbml.AST_FUNCTION_TANH | |
AST_INTEGER = _libsbml.AST_INTEGER | |
AST_LAMBDA = _libsbml.AST_LAMBDA | |
AST_LOGICAL_AND = _libsbml.AST_LOGICAL_AND | |
AST_LOGICAL_NOT = _libsbml.AST_LOGICAL_NOT | |
AST_LOGICAL_OR = _libsbml.AST_LOGICAL_OR | |
AST_LOGICAL_XOR = _libsbml.AST_LOGICAL_XOR | |
AST_MINUS = _libsbml.AST_MINUS | |
AST_NAME = _libsbml.AST_NAME | |
AST_NAME_AVOGADRO = _libsbml.AST_NAME_AVOGADRO | |
AST_NAME_TIME = _libsbml.AST_NAME_TIME | |
AST_ORIGINATES_IN_PACKAGE = _libsbml.AST_ORIGINATES_IN_PACKAGE | |
AST_PLUS = _libsbml.AST_PLUS | |
AST_POWER = _libsbml.AST_POWER | |
AST_QUALIFIER_BVAR = _libsbml.AST_QUALIFIER_BVAR | |
AST_QUALIFIER_DEGREE = _libsbml.AST_QUALIFIER_DEGREE | |
AST_QUALIFIER_LOGBASE = _libsbml.AST_QUALIFIER_LOGBASE | |
AST_RATIONAL = _libsbml.AST_RATIONAL | |
AST_REAL = _libsbml.AST_REAL | |
AST_REAL_E = _libsbml.AST_REAL_E | |
AST_RELATIONAL_EQ = _libsbml.AST_RELATIONAL_EQ | |
AST_RELATIONAL_GEQ = _libsbml.AST_RELATIONAL_GEQ | |
AST_RELATIONAL_GT = _libsbml.AST_RELATIONAL_GT | |
AST_RELATIONAL_LEQ = _libsbml.AST_RELATIONAL_LEQ | |
AST_RELATIONAL_LT = _libsbml.AST_RELATIONAL_LT | |
AST_RELATIONAL_NEQ = _libsbml.AST_RELATIONAL_NEQ | |
AST_SEMANTICS = _libsbml.AST_SEMANTICS | |
AST_TIMES = _libsbml.AST_TIMES | |
AST_UNKNOWN = _libsbml.AST_UNKNOWN | |
AvogadroNotSupported = _libsbml.AvogadroNotSupported | |
BadCsymbolDefinitionURLValue = _libsbml.BadCsymbolDefinitionURLValue | |
BadlyFormedXML = _libsbml.BadlyFormedXML | |
BadMathML = _libsbml.BadMathML | |
BadMathMLNodeType = _libsbml.BadMathMLNodeType | |
BadProcessingInstruction = _libsbml.BadProcessingInstruction | |
BadXMLAttribute = _libsbml.BadXMLAttribute | |
BadXMLAttributeValue = _libsbml.BadXMLAttributeValue | |
BadXMLComment = _libsbml.BadXMLComment | |
BadXMLDecl = _libsbml.BadXMLDecl | |
BadXMLDeclLocation = _libsbml.BadXMLDeclLocation | |
BadXMLDOCTYPE = _libsbml.BadXMLDOCTYPE | |
BadXMLDocumentStructure = _libsbml.BadXMLDocumentStructure | |
BadXMLIDRef = _libsbml.BadXMLIDRef | |
BadXMLIDValue = _libsbml.BadXMLIDValue | |
BadXMLPrefix = _libsbml.BadXMLPrefix | |
BadXMLPrefixValue = _libsbml.BadXMLPrefixValue | |
BIOLOGICAL_QUALIFIER = _libsbml.BIOLOGICAL_QUALIFIER | |
BooleanOpsNeedBooleanArgs = _libsbml.BooleanOpsNeedBooleanArgs | |
BothAmountAndConcentrationSet = _libsbml.BothAmountAndConcentrationSet | |
BothStoichiometryAndMath = _libsbml.BothStoichiometryAndMath | |
BQB_ENCODES = _libsbml.BQB_ENCODES | |
BQB_HAS_PART = _libsbml.BQB_HAS_PART | |
BQB_HAS_PROPERTY = _libsbml.BQB_HAS_PROPERTY | |
BQB_HAS_VERSION = _libsbml.BQB_HAS_VERSION | |
BQB_IS = _libsbml.BQB_IS | |
BQB_IS_DESCRIBED_BY = _libsbml.BQB_IS_DESCRIBED_BY | |
BQB_IS_ENCODED_BY = _libsbml.BQB_IS_ENCODED_BY | |
BQB_IS_HOMOLOG_TO = _libsbml.BQB_IS_HOMOLOG_TO | |
BQB_IS_PART_OF = _libsbml.BQB_IS_PART_OF | |
BQB_IS_PROPERTY_OF = _libsbml.BQB_IS_PROPERTY_OF | |
BQB_IS_VERSION_OF = _libsbml.BQB_IS_VERSION_OF | |
BQB_OCCURS_IN = _libsbml.BQB_OCCURS_IN | |
BQB_UNKNOWN = _libsbml.BQB_UNKNOWN | |
BQM_IS = _libsbml.BQM_IS | |
BQM_IS_DERIVED_FROM = _libsbml.BQM_IS_DERIVED_FROM | |
BQM_IS_DESCRIBED_BY = _libsbml.BQM_IS_DESCRIBED_BY | |
BQM_UNKNOWN = _libsbml.BQM_UNKNOWN | |
CannotConvertToL1V1 = _libsbml.CannotConvertToL1V1 | |
CelsiusNoLongerValid = _libsbml.CelsiusNoLongerValid | |
CircularRuleDependency = _libsbml.CircularRuleDependency | |
CNV_TYPE_BOOL = _libsbml.CNV_TYPE_BOOL | |
CNV_TYPE_DOUBLE = _libsbml.CNV_TYPE_DOUBLE | |
CNV_TYPE_INT = _libsbml.CNV_TYPE_INT | |
CNV_TYPE_SINGLE = _libsbml.CNV_TYPE_SINGLE | |
CNV_TYPE_STRING = _libsbml.CNV_TYPE_STRING | |
CompartmentNotOnL1Reaction = _libsbml.CompartmentNotOnL1Reaction | |
CompartmentOnReaction = _libsbml.CompartmentOnReaction | |
CompartmentShouldHaveSize = _libsbml.CompartmentShouldHaveSize | |
CompartmentTypeNotValidAttribute = _libsbml.CompartmentTypeNotValidAttribute | |
CompartmentTypeNotValidComponent = _libsbml.CompartmentTypeNotValidComponent | |
CompAttributeRequiredMissing = _libsbml.CompAttributeRequiredMissing | |
CompAttributeRequiredMustBeBoolean = _libsbml.CompAttributeRequiredMustBeBoolean | |
CompAttributeRequiredMustBeTrue = _libsbml.CompAttributeRequiredMustBeTrue | |
CompCircularExternalModelReference = _libsbml.CompCircularExternalModelReference | |
CompDeletedReplacement = _libsbml.CompDeletedReplacement | |
CompDeletionAllowedAttributes = _libsbml.CompDeletionAllowedAttributes | |
CompDeletionMustReferenceObject = _libsbml.CompDeletionMustReferenceObject | |
CompDeletionMustReferOnlyOneObject = _libsbml.CompDeletionMustReferOnlyOneObject | |
CompDeprecatedDeleteFunction = _libsbml.CompDeprecatedDeleteFunction | |
CompDeprecatedReplaceFunction = _libsbml.CompDeprecatedReplaceFunction | |
CompDeprecatedSBaseRefSpelling = _libsbml.CompDeprecatedSBaseRefSpelling | |
CompDuplicateComponentId = _libsbml.CompDuplicateComponentId | |
CompElementNotInNs = _libsbml.CompElementNotInNs | |
CompEmptyLOModelDefs = _libsbml.CompEmptyLOModelDefs | |
CompEmptyLOReplacedElements = _libsbml.CompEmptyLOReplacedElements | |
CompExtentConversionMustBeParameter = _libsbml.CompExtentConversionMustBeParameter | |
CompExtModDefAllowedAttributes = _libsbml.CompExtModDefAllowedAttributes | |
CompExtModDefAllowedCoreAttributes = _libsbml.CompExtModDefAllowedCoreAttributes | |
CompExtModDefAllowedElements = _libsbml.CompExtModDefAllowedElements | |
CompExtModDefBad = _libsbml.CompExtModDefBad | |
CompExtModMd5DoesNotMatch = _libsbml.CompExtModMd5DoesNotMatch | |
CompFlatModelNotValid = _libsbml.CompFlatModelNotValid | |
CompFlatteningNotImplementedNotReqd = _libsbml.CompFlatteningNotImplementedNotReqd | |
CompFlatteningNotImplementedReqd = _libsbml.CompFlatteningNotImplementedReqd | |
CompFlatteningNotRecognisedNotReqd = _libsbml.CompFlatteningNotRecognisedNotReqd | |
CompFlatteningNotRecognisedReqd = _libsbml.CompFlatteningNotRecognisedReqd | |
CompFlatteningWarning = _libsbml.CompFlatteningWarning | |
CompIdRefMayReferenceUnknownPackage = _libsbml.CompIdRefMayReferenceUnknownPackage | |
CompIdRefMustReferenceObject = _libsbml.CompIdRefMustReferenceObject | |
CompInvalidConversionFactorSyntax = _libsbml.CompInvalidConversionFactorSyntax | |
CompInvalidDeletionSyntax = _libsbml.CompInvalidDeletionSyntax | |
CompInvalidExtentConvFactorSyntax = _libsbml.CompInvalidExtentConvFactorSyntax | |
CompInvalidIdRefSyntax = _libsbml.CompInvalidIdRefSyntax | |
CompInvalidMD5Syntax = _libsbml.CompInvalidMD5Syntax | |
CompInvalidMetaIdRefSyntax = _libsbml.CompInvalidMetaIdRefSyntax | |
CompInvalidModelRefSyntax = _libsbml.CompInvalidModelRefSyntax | |
CompInvalidNameSyntax = _libsbml.CompInvalidNameSyntax | |
CompInvalidPortRefSyntax = _libsbml.CompInvalidPortRefSyntax | |
CompInvalidSIdSyntax = _libsbml.CompInvalidSIdSyntax | |
CompInvalidSourceSyntax = _libsbml.CompInvalidSourceSyntax | |
CompInvalidSubmodelRefSyntax = _libsbml.CompInvalidSubmodelRefSyntax | |
CompInvalidTimeConvFactorSyntax = _libsbml.CompInvalidTimeConvFactorSyntax | |
CompInvalidUnitRefSyntax = _libsbml.CompInvalidUnitRefSyntax | |
CompLineNumbersUnreliable = _libsbml.CompLineNumbersUnreliable | |
CompLODeletionAllowedAttributes = _libsbml.CompLODeletionAllowedAttributes | |
CompLODeletionsAllowedElements = _libsbml.CompLODeletionsAllowedElements | |
CompLOExtModDefsAllowedAttributes = _libsbml.CompLOExtModDefsAllowedAttributes | |
CompLOExtModelDefsAllowedElements = _libsbml.CompLOExtModelDefsAllowedElements | |
CompLOModelDefsAllowedAttributes = _libsbml.CompLOModelDefsAllowedAttributes | |
CompLOModelDefsAllowedElements = _libsbml.CompLOModelDefsAllowedElements | |
CompLOPortsAllowedAttributes = _libsbml.CompLOPortsAllowedAttributes | |
CompLOPortsAllowedElements = _libsbml.CompLOPortsAllowedElements | |
CompLOReplacedElementsAllowedAttribs = _libsbml.CompLOReplacedElementsAllowedAttribs | |
CompLOReplaceElementsAllowedElements = _libsbml.CompLOReplaceElementsAllowedElements | |
CompLOSubmodelsAllowedAttributes = _libsbml.CompLOSubmodelsAllowedAttributes | |
CompLOSubmodelsAllowedElements = _libsbml.CompLOSubmodelsAllowedElements | |
CompMetaIdRefMayReferenceUnknownPkg = _libsbml.CompMetaIdRefMayReferenceUnknownPkg | |
CompMetaIdRefMustReferenceObject = _libsbml.CompMetaIdRefMustReferenceObject | |
CompModCannotCircularlyReferenceSelf = _libsbml.CompModCannotCircularlyReferenceSelf | |
CompModelFlatteningFailed = _libsbml.CompModelFlatteningFailed | |
CompModReferenceMustIdOfModel = _libsbml.CompModReferenceMustIdOfModel | |
CompModReferenceSyntax = _libsbml.CompModReferenceSyntax | |
CompMustReplaceIDs = _libsbml.CompMustReplaceIDs | |
CompMustReplaceMetaIDs = _libsbml.CompMustReplaceMetaIDs | |
CompMustReplacePackageIDs = _libsbml.CompMustReplacePackageIDs | |
CompMustReplaceSameClass = _libsbml.CompMustReplaceSameClass | |
CompNoEmptyListOfOnModel = _libsbml.CompNoEmptyListOfOnModel | |
CompNoModelInReference = _libsbml.CompNoModelInReference | |
CompNoMultipleReferences = _libsbml.CompNoMultipleReferences | |
CompNSUndeclared = _libsbml.CompNSUndeclared | |
CompOneListOfDeletionOnSubmodel = _libsbml.CompOneListOfDeletionOnSubmodel | |
CompOneListOfExtModelDefinitions = _libsbml.CompOneListOfExtModelDefinitions | |
CompOneListOfModelDefinitions = _libsbml.CompOneListOfModelDefinitions | |
CompOneListOfOnModel = _libsbml.CompOneListOfOnModel | |
CompOneListOfReplacedElements = _libsbml.CompOneListOfReplacedElements | |
CompOneReplacedByElement = _libsbml.CompOneReplacedByElement | |
CompOneSBaseRefOnly = _libsbml.CompOneSBaseRefOnly | |
CompParentOfSBRefChildMustBeSubmodel = _libsbml.CompParentOfSBRefChildMustBeSubmodel | |
CompPortAllowedAttributes = _libsbml.CompPortAllowedAttributes | |
CompPortMustReferenceObject = _libsbml.CompPortMustReferenceObject | |
CompPortMustReferenceOnlyOneObject = _libsbml.CompPortMustReferenceOnlyOneObject | |
CompPortReferencesUnique = _libsbml.CompPortReferencesUnique | |
CompPortRefMustReferencePort = _libsbml.CompPortRefMustReferencePort | |
CompReferenceMustBeL3 = _libsbml.CompReferenceMustBeL3 | |
CompReplacedByAllowedAttributes = _libsbml.CompReplacedByAllowedAttributes | |
CompReplacedByMustRefObject = _libsbml.CompReplacedByMustRefObject | |
CompReplacedByMustRefOnlyOne = _libsbml.CompReplacedByMustRefOnlyOne | |
CompReplacedBySubModelRef = _libsbml.CompReplacedBySubModelRef | |
CompReplacedElementAllowedAttributes = _libsbml.CompReplacedElementAllowedAttributes | |
CompReplacedElementConvFactorRef = _libsbml.CompReplacedElementConvFactorRef | |
CompReplacedElementDeletionRef = _libsbml.CompReplacedElementDeletionRef | |
CompReplacedElementMustRefObject = _libsbml.CompReplacedElementMustRefObject | |
CompReplacedElementMustRefOnlyOne = _libsbml.CompReplacedElementMustRefOnlyOne | |
CompReplacedElementNoDelAndConvFact = _libsbml.CompReplacedElementNoDelAndConvFact | |
CompReplacedElementSameReference = _libsbml.CompReplacedElementSameReference | |
CompReplacedElementSubModelRef = _libsbml.CompReplacedElementSubModelRef | |
CompReplacedUnitsShouldMatch = _libsbml.CompReplacedUnitsShouldMatch | |
CompRequiredFalseIfAllElementsReplaced = _libsbml.CompRequiredFalseIfAllElementsReplaced | |
CompRequiredTrueIfElementsRemain = _libsbml.CompRequiredTrueIfElementsRemain | |
CompSBaseRefMustReferenceObject = _libsbml.CompSBaseRefMustReferenceObject | |
CompSBaseRefMustReferenceOnlyOneObject = _libsbml.CompSBaseRefMustReferenceOnlyOneObject | |
CompSubmodelAllowedAttributes = _libsbml.CompSubmodelAllowedAttributes | |
CompSubmodelAllowedCoreAttributes = _libsbml.CompSubmodelAllowedCoreAttributes | |
CompSubmodelAllowedElements = _libsbml.CompSubmodelAllowedElements | |
CompSubmodelCannotReferenceSelf = _libsbml.CompSubmodelCannotReferenceSelf | |
CompSubmodelMustReferenceModel = _libsbml.CompSubmodelMustReferenceModel | |
CompSubmodelNoEmptyLODeletions = _libsbml.CompSubmodelNoEmptyLODeletions | |
CompTimeConversionMustBeParameter = _libsbml.CompTimeConversionMustBeParameter | |
CompUniqueModelIds = _libsbml.CompUniqueModelIds | |
CompUniquePortIds = _libsbml.CompUniquePortIds | |
CompUnitRefMustReferenceUnitDef = _libsbml.CompUnitRefMustReferenceUnitDef | |
CompUnknown = _libsbml.CompUnknown | |
CompUnresolvedReference = _libsbml.CompUnresolvedReference | |
ConstantNotValidAttribute = _libsbml.ConstantNotValidAttribute | |
ConstantSpeciesNotValidAttribute = _libsbml.ConstantSpeciesNotValidAttribute | |
ConstraintContainsDOCTYPE = _libsbml.ConstraintContainsDOCTYPE | |
ConstraintContainsXMLDecl = _libsbml.ConstraintContainsXMLDecl | |
ConstraintMathNotBoolean = _libsbml.ConstraintMathNotBoolean | |
ConstraintNotInXHTMLNamespace = _libsbml.ConstraintNotInXHTMLNamespace | |
ConstraintNotValidComponent = _libsbml.ConstraintNotValidComponent | |
ConversionFactorMustConstant = _libsbml.ConversionFactorMustConstant | |
ConversionFactorNotInL1 = _libsbml.ConversionFactorNotInL1 | |
ConversionFactorOnSpecies = _libsbml.ConversionFactorOnSpecies | |
DanglingUnitSIdRef = _libsbml.DanglingUnitSIdRef | |
DelayNeedsValuesFromTriggerTime = _libsbml.DelayNeedsValuesFromTriggerTime | |
DelayUnitsNotTime = _libsbml.DelayUnitsNotTime | |
DisallowedDefinitionURLUse = _libsbml.DisallowedDefinitionURLUse | |
DisallowedMathMLEncodingUse = _libsbml.DisallowedMathMLEncodingUse | |
DisallowedMathMLSymbol = _libsbml.DisallowedMathMLSymbol | |
DisallowedMathTypeAttributeUse = _libsbml.DisallowedMathTypeAttributeUse | |
DisallowedMathTypeAttributeValue = _libsbml.DisallowedMathTypeAttributeValue | |
DisallowedMathUnitsUse = _libsbml.DisallowedMathUnitsUse | |
DuplicateAnnotationInvalidInL2v2 = _libsbml.DuplicateAnnotationInvalidInL2v2 | |
DuplicateAnnotationInvalidInL2v3 = _libsbml.DuplicateAnnotationInvalidInL2v3 | |
DuplicateAnnotationInvalidInL2v4 = _libsbml.DuplicateAnnotationInvalidInL2v4 | |
DuplicateAnnotationInvalidInL3v1 = _libsbml.DuplicateAnnotationInvalidInL3v1 | |
DuplicateAnnotationNamespaces = _libsbml.DuplicateAnnotationNamespaces | |
DuplicateComponentId = _libsbml.DuplicateComponentId | |
DuplicateLocalParameterId = _libsbml.DuplicateLocalParameterId | |
DuplicateMetaId = _libsbml.DuplicateMetaId | |
DuplicateUnitDefinitionId = _libsbml.DuplicateUnitDefinitionId | |
DuplicateXMLAttribute = _libsbml.DuplicateXMLAttribute | |
EmptyListElement = _libsbml.EmptyListElement | |
EmptyListInKineticLaw = _libsbml.EmptyListInKineticLaw | |
EmptyListInReaction = _libsbml.EmptyListInReaction | |
EmptyListOfUnits = _libsbml.EmptyListOfUnits | |
EmptyUnitListElement = _libsbml.EmptyUnitListElement | |
EventAndAssignmentRuleForId = _libsbml.EventAndAssignmentRuleForId | |
EventAssignCompartmentMismatch = _libsbml.EventAssignCompartmentMismatch | |
EventAssignmentForConstantEntity = _libsbml.EventAssignmentForConstantEntity | |
EventAssignParameterMismatch = _libsbml.EventAssignParameterMismatch | |
EventAssignSpeciesMismatch = _libsbml.EventAssignSpeciesMismatch | |
EventAssignStoichiometryMismatch = _libsbml.EventAssignStoichiometryMismatch | |
EventNotValidComponent = _libsbml.EventNotValidComponent | |
ExtentUnitsNotSubstance = _libsbml.ExtentUnitsNotSubstance | |
FailedMathMLReadOfDouble = _libsbml.FailedMathMLReadOfDouble | |
FailedMathMLReadOfExponential = _libsbml.FailedMathMLReadOfExponential | |
FailedMathMLReadOfInteger = _libsbml.FailedMathMLReadOfInteger | |
FailedMathMLReadOfRational = _libsbml.FailedMathMLReadOfRational | |
FbcActiveObjectiveRefersObjective = _libsbml.FbcActiveObjectiveRefersObjective | |
FbcActiveObjectiveSyntax = _libsbml.FbcActiveObjectiveSyntax | |
FbcAttributeRequiredMissing = _libsbml.FbcAttributeRequiredMissing | |
FbcAttributeRequiredMustBeBoolean = _libsbml.FbcAttributeRequiredMustBeBoolean | |
FbcDuplicateComponentId = _libsbml.FbcDuplicateComponentId | |
FbcElementNotInNs = _libsbml.FbcElementNotInNs | |
FbcFluxBoundAllowedElements = _libsbml.FbcFluxBoundAllowedElements | |
FbcFluxBoundAllowedL3Attributes = _libsbml.FbcFluxBoundAllowedL3Attributes | |
FbcFluxBoundNameMustBeString = _libsbml.FbcFluxBoundNameMustBeString | |
FbcFluxBoundOperationMustBeEnum = _libsbml.FbcFluxBoundOperationMustBeEnum | |
FbcFluxBoundReactionMustExist = _libsbml.FbcFluxBoundReactionMustExist | |
FbcFluxBoundRectionMustBeSIdRef = _libsbml.FbcFluxBoundRectionMustBeSIdRef | |
FbcFluxBoundRequiredAttributes = _libsbml.FbcFluxBoundRequiredAttributes | |
FbcFluxBoundsForReactionConflict = _libsbml.FbcFluxBoundsForReactionConflict | |
FbcFluxBoundValueMustBeDouble = _libsbml.FbcFluxBoundValueMustBeDouble | |
FbcFluxObjectAllowedElements = _libsbml.FbcFluxObjectAllowedElements | |
FbcFluxObjectAllowedL3Attributes = _libsbml.FbcFluxObjectAllowedL3Attributes | |
FbcFluxObjectCoefficientMustBeDouble = _libsbml.FbcFluxObjectCoefficientMustBeDouble | |
FbcFluxObjectNameMustBeString = _libsbml.FbcFluxObjectNameMustBeString | |
FbcFluxObjectReactionMustBeSIdRef = _libsbml.FbcFluxObjectReactionMustBeSIdRef | |
FbcFluxObjectReactionMustExist = _libsbml.FbcFluxObjectReactionMustExist | |
FbcFluxObjectRequiredAttributes = _libsbml.FbcFluxObjectRequiredAttributes | |
FbcLOFluxBoundsAllowedAttributes = _libsbml.FbcLOFluxBoundsAllowedAttributes | |
FbcLOFluxBoundsAllowedElements = _libsbml.FbcLOFluxBoundsAllowedElements | |
FbcLOObjectivesAllowedAttributes = _libsbml.FbcLOObjectivesAllowedAttributes | |
FbcLOObjectivesAllowedElements = _libsbml.FbcLOObjectivesAllowedElements | |
FbcNoEmptyListOfs = _libsbml.FbcNoEmptyListOfs | |
FbcNSUndeclared = _libsbml.FbcNSUndeclared | |
FbcObjectiveAllowedElements = _libsbml.FbcObjectiveAllowedElements | |
FbcObjectiveAllowedL3Attributes = _libsbml.FbcObjectiveAllowedL3Attributes | |
FbcObjectiveLOFluxObjAllowedAttribs = _libsbml.FbcObjectiveLOFluxObjAllowedAttribs | |
FbcObjectiveLOFluxObjMustNotBeEmpty = _libsbml.FbcObjectiveLOFluxObjMustNotBeEmpty | |
FbcObjectiveLOFluxObjOnlyFluxObj = _libsbml.FbcObjectiveLOFluxObjOnlyFluxObj | |
FbcObjectiveNameMustBeString = _libsbml.FbcObjectiveNameMustBeString | |
FbcObjectiveOneListOfObjectives = _libsbml.FbcObjectiveOneListOfObjectives | |
FbcObjectiveRequiredAttributes = _libsbml.FbcObjectiveRequiredAttributes | |
FbcObjectiveTypeMustBeEnum = _libsbml.FbcObjectiveTypeMustBeEnum | |
FbcOnlyOneEachListOf = _libsbml.FbcOnlyOneEachListOf | |
FbcRequiredFalse = _libsbml.FbcRequiredFalse | |
FbcSBMLSIdSyntax = _libsbml.FbcSBMLSIdSyntax | |
FbcSpeciesAllowedL3Attributes = _libsbml.FbcSpeciesAllowedL3Attributes | |
FbcSpeciesChargeMustBeInteger = _libsbml.FbcSpeciesChargeMustBeInteger | |
FbcSpeciesFormulaMustBeString = _libsbml.FbcSpeciesFormulaMustBeString | |
FbcUnknown = _libsbml.FbcUnknown | |
FLUXBOUND_OPERATION_EQUAL = _libsbml.FLUXBOUND_OPERATION_EQUAL | |
FLUXBOUND_OPERATION_GREATER = _libsbml.FLUXBOUND_OPERATION_GREATER | |
FLUXBOUND_OPERATION_GREATER_EQUAL = _libsbml.FLUXBOUND_OPERATION_GREATER_EQUAL | |
FLUXBOUND_OPERATION_LESS = _libsbml.FLUXBOUND_OPERATION_LESS | |
FLUXBOUND_OPERATION_LESS_EQUAL = _libsbml.FLUXBOUND_OPERATION_LESS_EQUAL | |
FLUXBOUND_OPERATION_UNKNOWN = _libsbml.FLUXBOUND_OPERATION_UNKNOWN | |
FormulaInLevel1KL = _libsbml.FormulaInLevel1KL | |
FuncDefNotValidComponent = _libsbml.FuncDefNotValidComponent | |
FunctionDefMathNotLambda = _libsbml.FunctionDefMathNotLambda | |
GENE_ASSOCIATION = _libsbml.GENE_ASSOCIATION | |
GeneralWarningNotSpecified = _libsbml.GeneralWarningNotSpecified | |
GlobalUnitsNotDeclared = _libsbml.GlobalUnitsNotDeclared | |
HasOnlySubsNoSpatialUnits = _libsbml.HasOnlySubsNoSpatialUnits | |
HasOnlySubstanceUnitsNotinL1 = _libsbml.HasOnlySubstanceUnitsNotinL1 | |
HasOnlySubsUnitsNotValidAttribute = _libsbml.HasOnlySubsUnitsNotValidAttribute | |
IdNotValidAttribute = _libsbml.IdNotValidAttribute | |
InconsistentArgUnits = _libsbml.InconsistentArgUnits | |
InconsistentArgUnitsWarnings = _libsbml.InconsistentArgUnitsWarnings | |
InconsistentExponUnitsWarnings = _libsbml.InconsistentExponUnitsWarnings | |
InconsistentKineticLawUnitsL3 = _libsbml.InconsistentKineticLawUnitsL3 | |
InconsistentPowerUnitsWarnings = _libsbml.InconsistentPowerUnitsWarnings | |
IncorrectCompartmentSpatialDimensions = _libsbml.IncorrectCompartmentSpatialDimensions | |
IncorrectOrderInConstraint = _libsbml.IncorrectOrderInConstraint | |
IncorrectOrderInEvent = _libsbml.IncorrectOrderInEvent | |
IncorrectOrderInKineticLaw = _libsbml.IncorrectOrderInKineticLaw | |
IncorrectOrderInModel = _libsbml.IncorrectOrderInModel | |
IncorrectOrderInReaction = _libsbml.IncorrectOrderInReaction | |
InitAssignCompartmenMismatch = _libsbml.InitAssignCompartmenMismatch | |
InitAssignmentAndRuleForSameId = _libsbml.InitAssignmentAndRuleForSameId | |
InitAssignParameterMismatch = _libsbml.InitAssignParameterMismatch | |
InitAssignSpeciesMismatch = _libsbml.InitAssignSpeciesMismatch | |
InitAssignStoichiometryMismatch = _libsbml.InitAssignStoichiometryMismatch | |
InitialAssignNotValidComponent = _libsbml.InitialAssignNotValidComponent | |
InitialValueFalseEventNotSupported = _libsbml.InitialValueFalseEventNotSupported | |
InitialValueNotBoolean = _libsbml.InitialValueNotBoolean | |
INPUT_SIGN_DUAL = _libsbml.INPUT_SIGN_DUAL | |
INPUT_SIGN_NEGATIVE = _libsbml.INPUT_SIGN_NEGATIVE | |
INPUT_SIGN_POSITIVE = _libsbml.INPUT_SIGN_POSITIVE | |
INPUT_SIGN_UNKNOWN = _libsbml.INPUT_SIGN_UNKNOWN | |
INPUT_SIGN_VALUE_NOTSET = _libsbml.INPUT_SIGN_VALUE_NOTSET | |
INPUT_TRANSITION_EFFECT_CONSUMPTION = _libsbml.INPUT_TRANSITION_EFFECT_CONSUMPTION | |
INPUT_TRANSITION_EFFECT_NONE = _libsbml.INPUT_TRANSITION_EFFECT_NONE | |
INPUT_TRANSITION_EFFECT_UNKNOWN = _libsbml.INPUT_TRANSITION_EFFECT_UNKNOWN | |
IntegerSpatialDimensions = _libsbml.IntegerSpatialDimensions | |
InternalXMLParserError = _libsbml.InternalXMLParserError | |
Invalid1DCompartmentUnits = _libsbml.Invalid1DCompartmentUnits | |
Invalid2DCompartmentUnits = _libsbml.Invalid2DCompartmentUnits | |
Invalid3DCompartmentUnits = _libsbml.Invalid3DCompartmentUnits | |
InvalidAfterXMLContent = _libsbml.InvalidAfterXMLContent | |
InvalidApplyCiInLambda = _libsbml.InvalidApplyCiInLambda | |
InvalidAreaRedefinition = _libsbml.InvalidAreaRedefinition | |
InvalidAssignRuleVariable = _libsbml.InvalidAssignRuleVariable | |
InvalidCharInXML = _libsbml.InvalidCharInXML | |
InvalidCiInLambda = _libsbml.InvalidCiInLambda | |
InvalidCompartmentSBOTerm = _libsbml.InvalidCompartmentSBOTerm | |
InvalidCompartmentTypeRef = _libsbml.InvalidCompartmentTypeRef | |
InvalidCompartmentTypeSBOTerm = _libsbml.InvalidCompartmentTypeSBOTerm | |
InvalidConstraintContent = _libsbml.InvalidConstraintContent | |
InvalidConstraintSBOTerm = _libsbml.InvalidConstraintSBOTerm | |
InvalidDelaySBOTerm = _libsbml.InvalidDelaySBOTerm | |
InvalidEventAssignmentSBOTerm = _libsbml.InvalidEventAssignmentSBOTerm | |
InvalidEventAssignmentVariable = _libsbml.InvalidEventAssignmentVariable | |
InvalidEventSBOTerm = _libsbml.InvalidEventSBOTerm | |
InvalidFunctionDefReturnType = _libsbml.InvalidFunctionDefReturnType | |
InvalidFunctionDefSBOTerm = _libsbml.InvalidFunctionDefSBOTerm | |
InvalidIdSyntax = _libsbml.InvalidIdSyntax | |
InvalidInitAssignSBOTerm = _libsbml.InvalidInitAssignSBOTerm | |
InvalidInitAssignSymbol = _libsbml.InvalidInitAssignSymbol | |
InvalidKineticLawSBOTerm = _libsbml.InvalidKineticLawSBOTerm | |
InvalidL1CompartmentUnits = _libsbml.InvalidL1CompartmentUnits | |
InvalidLengthRedefinition = _libsbml.InvalidLengthRedefinition | |
InvalidMathElement = _libsbml.InvalidMathElement | |
InvalidMathMLAttribute = _libsbml.InvalidMathMLAttribute | |
InvalidMetaidSyntax = _libsbml.InvalidMetaidSyntax | |
InvalidModelSBOTerm = _libsbml.InvalidModelSBOTerm | |
InvalidModifiersList = _libsbml.InvalidModifiersList | |
InvalidNamespaceOnSBML = _libsbml.InvalidNamespaceOnSBML | |
InvalidNameSyntax = _libsbml.InvalidNameSyntax | |
InvalidNoArgsPassedToFunctionDef = _libsbml.InvalidNoArgsPassedToFunctionDef | |
InvalidNotesContent = _libsbml.InvalidNotesContent | |
InvalidParameterSBOTerm = _libsbml.InvalidParameterSBOTerm | |
InvalidParameterUnits = _libsbml.InvalidParameterUnits | |
InvalidRateRuleVariable = _libsbml.InvalidRateRuleVariable | |
InvalidReactantsProductsList = _libsbml.InvalidReactantsProductsList | |
InvalidReactionSBOTerm = _libsbml.InvalidReactionSBOTerm | |
InvalidRuleOrdering = _libsbml.InvalidRuleOrdering | |
InvalidRuleSBOTerm = _libsbml.InvalidRuleSBOTerm | |
InvalidSBMLLevelVersion = _libsbml.InvalidSBMLLevelVersion | |
InvalidSBOTermSyntax = _libsbml.InvalidSBOTermSyntax | |
InvalidSpeciesCompartmentRef = _libsbml.InvalidSpeciesCompartmentRef | |
InvalidSpeciesReference = _libsbml.InvalidSpeciesReference | |
InvalidSpeciesReferenceSBOTerm = _libsbml.InvalidSpeciesReferenceSBOTerm | |
InvalidSpeciesSBOTerm = _libsbml.InvalidSpeciesSBOTerm | |
InvalidSpeciesSusbstanceUnits = _libsbml.InvalidSpeciesSusbstanceUnits | |
InvalidSpeciesTypeRef = _libsbml.InvalidSpeciesTypeRef | |
InvalidSpeciesTypeSBOTerm = _libsbml.InvalidSpeciesTypeSBOTerm | |
InvalidSubstanceRedefinition = _libsbml.InvalidSubstanceRedefinition | |
InvalidTargetLevelVersion = _libsbml.InvalidTargetLevelVersion | |
InvalidTimeRedefinition = _libsbml.InvalidTimeRedefinition | |
InvalidTriggerSBOTerm = _libsbml.InvalidTriggerSBOTerm | |
InvalidUnitDefId = _libsbml.InvalidUnitDefId | |
InvalidUnitIdSyntax = _libsbml.InvalidUnitIdSyntax | |
InvalidUnitKind = _libsbml.InvalidUnitKind | |
InvalidUnitsValue = _libsbml.InvalidUnitsValue | |
InvalidVolumeRedefinition = _libsbml.InvalidVolumeRedefinition | |
InvalidXMLConstruct = _libsbml.InvalidXMLConstruct | |
KineticLawNotSubstancePerTime = _libsbml.KineticLawNotSubstancePerTime | |
KineticLawParametersAreLocalOnly = _libsbml.KineticLawParametersAreLocalOnly | |
L1V1CompartmentVolumeReqd = _libsbml.L1V1CompartmentVolumeReqd | |
L3AreaUnitsOnModel = _libsbml.L3AreaUnitsOnModel | |
L3ConversionFactorOnModel = _libsbml.L3ConversionFactorOnModel | |
L3ExtentUnitsOnModel = _libsbml.L3ExtentUnitsOnModel | |
L3LengthUnitsOnModel = _libsbml.L3LengthUnitsOnModel | |
L3NotSchemaConformant = _libsbml.L3NotSchemaConformant | |
L3NotSupported = _libsbml.L3NotSupported | |
L3P_AVOGADRO_IS_CSYMBOL = _libsbml.L3P_AVOGADRO_IS_CSYMBOL | |
L3P_AVOGADRO_IS_NAME = _libsbml.L3P_AVOGADRO_IS_NAME | |
L3P_COLLAPSE_UNARY_MINUS = _libsbml.L3P_COLLAPSE_UNARY_MINUS | |
L3P_EXPAND_UNARY_MINUS = _libsbml.L3P_EXPAND_UNARY_MINUS | |
L3P_NO_UNITS = _libsbml.L3P_NO_UNITS | |
L3P_PARSE_LOG_AS_ERROR = _libsbml.L3P_PARSE_LOG_AS_ERROR | |
L3P_PARSE_LOG_AS_LN = _libsbml.L3P_PARSE_LOG_AS_LN | |
L3P_PARSE_LOG_AS_LOG10 = _libsbml.L3P_PARSE_LOG_AS_LOG10 | |
L3P_PARSE_UNITS = _libsbml.L3P_PARSE_UNITS | |
L3PackageOnLowerSBML = _libsbml.L3PackageOnLowerSBML | |
L3SpatialDimensionsUnset = _libsbml.L3SpatialDimensionsUnset | |
L3SubstanceUnitsOnModel = _libsbml.L3SubstanceUnitsOnModel | |
L3TimeUnitsOnModel = _libsbml.L3TimeUnitsOnModel | |
L3VolumeUnitsOnModel = _libsbml.L3VolumeUnitsOnModel | |
LambdaOnlyAllowedInFunctionDef = _libsbml.LambdaOnlyAllowedInFunctionDef | |
LayoutAttributeRequiredMissing = _libsbml.LayoutAttributeRequiredMissing | |
LayoutAttributeRequiredMustBeBoolean = _libsbml.LayoutAttributeRequiredMustBeBoolean | |
LayoutBBoxAllowedAttributes = _libsbml.LayoutBBoxAllowedAttributes | |
LayoutBBoxAllowedCoreAttributes = _libsbml.LayoutBBoxAllowedCoreAttributes | |
LayoutBBoxAllowedCoreElements = _libsbml.LayoutBBoxAllowedCoreElements | |
LayoutBBoxAllowedElements = _libsbml.LayoutBBoxAllowedElements | |
LayoutBBoxConsistent3DDefinition = _libsbml.LayoutBBoxConsistent3DDefinition | |
LayoutCBezAllowedAttributes = _libsbml.LayoutCBezAllowedAttributes | |
LayoutCBezAllowedCoreAttributes = _libsbml.LayoutCBezAllowedCoreAttributes | |
LayoutCBezAllowedCoreElements = _libsbml.LayoutCBezAllowedCoreElements | |
LayoutCBezAllowedElements = _libsbml.LayoutCBezAllowedElements | |
LayoutCGAllowedAttributes = _libsbml.LayoutCGAllowedAttributes | |
LayoutCGAllowedCoreAttributes = _libsbml.LayoutCGAllowedCoreAttributes | |
LayoutCGAllowedCoreElements = _libsbml.LayoutCGAllowedCoreElements | |
LayoutCGAllowedElements = _libsbml.LayoutCGAllowedElements | |
LayoutCGCompartmentMustRefComp = _libsbml.LayoutCGCompartmentMustRefComp | |
LayoutCGCompartmentSyntax = _libsbml.LayoutCGCompartmentSyntax | |
LayoutCGMetaIdRefMustBeIDREF = _libsbml.LayoutCGMetaIdRefMustBeIDREF | |
LayoutCGMetaIdRefMustReferenceObject = _libsbml.LayoutCGMetaIdRefMustReferenceObject | |
LayoutCGNoDuplicateReferences = _libsbml.LayoutCGNoDuplicateReferences | |
LayoutCGOrderMustBeDouble = _libsbml.LayoutCGOrderMustBeDouble | |
LayoutCurveAllowedAttributes = _libsbml.LayoutCurveAllowedAttributes | |
LayoutCurveAllowedCoreAttributes = _libsbml.LayoutCurveAllowedCoreAttributes | |
LayoutCurveAllowedCoreElements = _libsbml.LayoutCurveAllowedCoreElements | |
LayoutCurveAllowedElements = _libsbml.LayoutCurveAllowedElements | |
LayoutDimsAllowedAttributes = _libsbml.LayoutDimsAllowedAttributes | |
LayoutDimsAllowedCoreAttributes = _libsbml.LayoutDimsAllowedCoreAttributes | |
LayoutDimsAllowedCoreElements = _libsbml.LayoutDimsAllowedCoreElements | |
LayoutDimsAttributesMustBeDouble = _libsbml.LayoutDimsAttributesMustBeDouble | |
LayoutDuplicateComponentId = _libsbml.LayoutDuplicateComponentId | |
LayoutElementNotInNs = _libsbml.LayoutElementNotInNs | |
LayoutGGAllowedAttributes = _libsbml.LayoutGGAllowedAttributes | |
LayoutGGAllowedCoreAttributes = _libsbml.LayoutGGAllowedCoreAttributes | |
LayoutGGAllowedCoreElements = _libsbml.LayoutGGAllowedCoreElements | |
LayoutGGAllowedElements = _libsbml.LayoutGGAllowedElements | |
LayoutGGMetaIdRefMustBeIDREF = _libsbml.LayoutGGMetaIdRefMustBeIDREF | |
LayoutGGMetaIdRefMustReferenceObject = _libsbml.LayoutGGMetaIdRefMustReferenceObject | |
LayoutGGNoDuplicateReferences = _libsbml.LayoutGGNoDuplicateReferences | |
LayoutGGReferenceMustRefObject = _libsbml.LayoutGGReferenceMustRefObject | |
LayoutGGReferenceSyntax = _libsbml.LayoutGGReferenceSyntax | |
LayoutGOAllowedAttributes = _libsbml.LayoutGOAllowedAttributes | |
LayoutGOAllowedCoreAttributes = _libsbml.LayoutGOAllowedCoreAttributes | |
LayoutGOAllowedCoreElements = _libsbml.LayoutGOAllowedCoreElements | |
LayoutGOAllowedElements = _libsbml.LayoutGOAllowedElements | |
LayoutGOMetaIdRefMustBeIDREF = _libsbml.LayoutGOMetaIdRefMustBeIDREF | |
LayoutGOMetaIdRefMustReferenceObject = _libsbml.LayoutGOMetaIdRefMustReferenceObject | |
LayoutGOMustContainBoundingBox = _libsbml.LayoutGOMustContainBoundingBox | |
LayoutLayoutAllowedAttributes = _libsbml.LayoutLayoutAllowedAttributes | |
LayoutLayoutAllowedCoreAttributes = _libsbml.LayoutLayoutAllowedCoreAttributes | |
LayoutLayoutAllowedElements = _libsbml.LayoutLayoutAllowedElements | |
LayoutLayoutMustHaveDimensions = _libsbml.LayoutLayoutMustHaveDimensions | |
LayoutLayoutNameMustBeString = _libsbml.LayoutLayoutNameMustBeString | |
LayoutLOAddGOAllowedAttribut = _libsbml.LayoutLOAddGOAllowedAttribut | |
LayoutLOAddGOAllowedElements = _libsbml.LayoutLOAddGOAllowedElements | |
LayoutLOCompGlyphAllowedAttributes = _libsbml.LayoutLOCompGlyphAllowedAttributes | |
LayoutLOCompGlyphAllowedElements = _libsbml.LayoutLOCompGlyphAllowedElements | |
LayoutLOCurveSegsAllowedAttributes = _libsbml.LayoutLOCurveSegsAllowedAttributes | |
LayoutLOCurveSegsAllowedElements = _libsbml.LayoutLOCurveSegsAllowedElements | |
LayoutLOCurveSegsNotEmpty = _libsbml.LayoutLOCurveSegsNotEmpty | |
LayoutLOLayoutsAllowedAttributes = _libsbml.LayoutLOLayoutsAllowedAttributes | |
LayoutLOLayoutsAllowedElements = _libsbml.LayoutLOLayoutsAllowedElements | |
LayoutLOLayoutsNotEmpty = _libsbml.LayoutLOLayoutsNotEmpty | |
LayoutLOReferenceGlyphAllowedAttribs = _libsbml.LayoutLOReferenceGlyphAllowedAttribs | |
LayoutLOReferenceGlyphAllowedElements = _libsbml.LayoutLOReferenceGlyphAllowedElements | |
LayoutLORnGlyphAllowedAttributes = _libsbml.LayoutLORnGlyphAllowedAttributes | |
LayoutLORnGlyphAllowedElements = _libsbml.LayoutLORnGlyphAllowedElements | |
LayoutLOSpeciesGlyphAllowedAttributes = _libsbml.LayoutLOSpeciesGlyphAllowedAttributes | |
LayoutLOSpeciesGlyphAllowedElements = _libsbml.LayoutLOSpeciesGlyphAllowedElements | |
LayoutLOSpeciesRefGlyphAllowedAttribs = _libsbml.LayoutLOSpeciesRefGlyphAllowedAttribs | |
LayoutLOSpeciesRefGlyphAllowedElements = _libsbml.LayoutLOSpeciesRefGlyphAllowedElements | |
LayoutLOSpeciesRefGlyphNotEmpty = _libsbml.LayoutLOSpeciesRefGlyphNotEmpty | |
LayoutLOSubGlyphAllowedAttribs = _libsbml.LayoutLOSubGlyphAllowedAttribs | |
LayoutLOSubGlyphAllowedElements = _libsbml.LayoutLOSubGlyphAllowedElements | |
LayoutLOTextGlyphAllowedAttributes = _libsbml.LayoutLOTextGlyphAllowedAttributes | |
LayoutLOTextGlyphAllowedElements = _libsbml.LayoutLOTextGlyphAllowedElements | |
LayoutLSegAllowedAttributes = _libsbml.LayoutLSegAllowedAttributes | |
LayoutLSegAllowedCoreAttributes = _libsbml.LayoutLSegAllowedCoreAttributes | |
LayoutLSegAllowedCoreElements = _libsbml.LayoutLSegAllowedCoreElements | |
LayoutLSegAllowedElements = _libsbml.LayoutLSegAllowedElements | |
LayoutNoEmptyListOfs = _libsbml.LayoutNoEmptyListOfs | |
LayoutNSUndeclared = _libsbml.LayoutNSUndeclared | |
LayoutOnlyOneEachListOf = _libsbml.LayoutOnlyOneEachListOf | |
LayoutOnlyOneLOLayouts = _libsbml.LayoutOnlyOneLOLayouts | |
LayoutPointAllowedAttributes = _libsbml.LayoutPointAllowedAttributes | |
LayoutPointAllowedCoreAttributes = _libsbml.LayoutPointAllowedCoreAttributes | |
LayoutPointAllowedCoreElements = _libsbml.LayoutPointAllowedCoreElements | |
LayoutPointAttributesMustBeDouble = _libsbml.LayoutPointAttributesMustBeDouble | |
LayoutREFGAllowedAttributes = _libsbml.LayoutREFGAllowedAttributes | |
LayoutREFGAllowedCoreAttributes = _libsbml.LayoutREFGAllowedCoreAttributes | |
LayoutREFGAllowedCoreElements = _libsbml.LayoutREFGAllowedCoreElements | |
LayoutREFGAllowedElements = _libsbml.LayoutREFGAllowedElements | |
LayoutREFGGlyphMustRefObject = _libsbml.LayoutREFGGlyphMustRefObject | |
LayoutREFGGlyphSyntax = _libsbml.LayoutREFGGlyphSyntax | |
LayoutREFGMetaIdRefMustBeIDREF = _libsbml.LayoutREFGMetaIdRefMustBeIDREF | |
LayoutREFGMetaIdRefMustReferenceObject = _libsbml.LayoutREFGMetaIdRefMustReferenceObject | |
LayoutREFGNoDuplicateReferences = _libsbml.LayoutREFGNoDuplicateReferences | |
LayoutREFGReferenceMustRefObject = _libsbml.LayoutREFGReferenceMustRefObject | |
LayoutREFGReferenceSyntax = _libsbml.LayoutREFGReferenceSyntax | |
LayoutREFGRoleSyntax = _libsbml.LayoutREFGRoleSyntax | |
LayoutRequiredFalse = _libsbml.LayoutRequiredFalse | |
LayoutRGAllowedAttributes = _libsbml.LayoutRGAllowedAttributes | |
LayoutRGAllowedCoreAttributes = _libsbml.LayoutRGAllowedCoreAttributes | |
LayoutRGAllowedCoreElements = _libsbml.LayoutRGAllowedCoreElements | |
LayoutRGAllowedElements = _libsbml.LayoutRGAllowedElements | |
LayoutRGMetaIdRefMustBeIDREF = _libsbml.LayoutRGMetaIdRefMustBeIDREF | |
LayoutRGMetaIdRefMustReferenceObject = _libsbml.LayoutRGMetaIdRefMustReferenceObject | |
LayoutRGNoDuplicateReferences = _libsbml.LayoutRGNoDuplicateReferences | |
LayoutRGReactionMustRefReaction = _libsbml.LayoutRGReactionMustRefReaction | |
LayoutRGReactionSyntax = _libsbml.LayoutRGReactionSyntax | |
LayoutSGAllowedAttributes = _libsbml.LayoutSGAllowedAttributes | |
LayoutSGAllowedCoreAttributes = _libsbml.LayoutSGAllowedCoreAttributes | |
LayoutSGAllowedCoreElements = _libsbml.LayoutSGAllowedCoreElements | |
LayoutSGAllowedElements = _libsbml.LayoutSGAllowedElements | |
LayoutSGMetaIdRefMustBeIDREF = _libsbml.LayoutSGMetaIdRefMustBeIDREF | |
LayoutSGMetaIdRefMustReferenceObject = _libsbml.LayoutSGMetaIdRefMustReferenceObject | |
LayoutSGNoDuplicateReferences = _libsbml.LayoutSGNoDuplicateReferences | |
LayoutSGSpeciesMustRefSpecies = _libsbml.LayoutSGSpeciesMustRefSpecies | |
LayoutSGSpeciesSyntax = _libsbml.LayoutSGSpeciesSyntax | |
LayoutSIdSyntax = _libsbml.LayoutSIdSyntax | |
LayoutSRGAllowedAttributes = _libsbml.LayoutSRGAllowedAttributes | |
LayoutSRGAllowedCoreAttributes = _libsbml.LayoutSRGAllowedCoreAttributes | |
LayoutSRGAllowedCoreElements = _libsbml.LayoutSRGAllowedCoreElements | |
LayoutSRGAllowedElements = _libsbml.LayoutSRGAllowedElements | |
LayoutSRGMetaIdRefMustBeIDREF = _libsbml.LayoutSRGMetaIdRefMustBeIDREF | |
LayoutSRGMetaIdRefMustReferenceObject = _libsbml.LayoutSRGMetaIdRefMustReferenceObject | |
LayoutSRGNoDuplicateReferences = _libsbml.LayoutSRGNoDuplicateReferences | |
LayoutSRGRoleSyntax = _libsbml.LayoutSRGRoleSyntax | |
LayoutSRGSpeciesGlyphMustRefObject = _libsbml.LayoutSRGSpeciesGlyphMustRefObject | |
LayoutSRGSpeciesGlyphSyntax = _libsbml.LayoutSRGSpeciesGlyphSyntax | |
LayoutSRGSpeciesReferenceSyntax = _libsbml.LayoutSRGSpeciesReferenceSyntax | |
LayoutSRGSpeciesRefMustRefObject = _libsbml.LayoutSRGSpeciesRefMustRefObject | |
LayoutTGAllowedAttributes = _libsbml.LayoutTGAllowedAttributes | |
LayoutTGAllowedCoreAttributes = _libsbml.LayoutTGAllowedCoreAttributes | |
LayoutTGAllowedCoreElements = _libsbml.LayoutTGAllowedCoreElements | |
LayoutTGAllowedElements = _libsbml.LayoutTGAllowedElements | |
LayoutTGGraphicalObjectMustRefObject = _libsbml.LayoutTGGraphicalObjectMustRefObject | |
LayoutTGGraphicalObjectSyntax = _libsbml.LayoutTGGraphicalObjectSyntax | |
LayoutTGMetaIdRefMustBeIDREF = _libsbml.LayoutTGMetaIdRefMustBeIDREF | |
LayoutTGMetaIdRefMustReferenceObject = _libsbml.LayoutTGMetaIdRefMustReferenceObject | |
LayoutTGNoDuplicateReferences = _libsbml.LayoutTGNoDuplicateReferences | |
LayoutTGOriginOfTextMustRefObject = _libsbml.LayoutTGOriginOfTextMustRefObject | |
LayoutTGOriginOfTextSyntax = _libsbml.LayoutTGOriginOfTextSyntax | |
LayoutTGTextMustBeString = _libsbml.LayoutTGTextMustBeString | |
LayoutUnknownError = _libsbml.LayoutUnknownError | |
LayoutXsiTypeAllowedLocations = _libsbml.LayoutXsiTypeAllowedLocations | |
LayoutXsiTypeSyntax = _libsbml.LayoutXsiTypeSyntax | |
LevelPositiveInteger = _libsbml.LevelPositiveInteger | |
LIBSBML_ANNOTATION_NAME_NOT_FOUND = _libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND | |
LIBSBML_ANNOTATION_NS_NOT_FOUND = _libsbml.LIBSBML_ANNOTATION_NS_NOT_FOUND | |
LIBSBML_CAT_GENERAL_CONSISTENCY = _libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY | |
LIBSBML_CAT_IDENTIFIER_CONSISTENCY = _libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY | |
LIBSBML_CAT_INTERNAL = _libsbml.LIBSBML_CAT_INTERNAL | |
LIBSBML_CAT_INTERNAL_CONSISTENCY = _libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY | |
LIBSBML_CAT_MATHML_CONSISTENCY = _libsbml.LIBSBML_CAT_MATHML_CONSISTENCY | |
LIBSBML_CAT_MODELING_PRACTICE = _libsbml.LIBSBML_CAT_MODELING_PRACTICE | |
LIBSBML_CAT_OVERDETERMINED_MODEL = _libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL | |
LIBSBML_CAT_SBML = _libsbml.LIBSBML_CAT_SBML | |
LIBSBML_CAT_SBML_L1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L1_COMPAT | |
LIBSBML_CAT_SBML_L2V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT | |
LIBSBML_CAT_SBML_L2V2_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT | |
LIBSBML_CAT_SBML_L2V3_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT | |
LIBSBML_CAT_SBML_L2V4_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT | |
LIBSBML_CAT_SBML_L3V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L3V1_COMPAT | |
LIBSBML_CAT_SBO_CONSISTENCY = _libsbml.LIBSBML_CAT_SBO_CONSISTENCY | |
LIBSBML_CAT_SYSTEM = _libsbml.LIBSBML_CAT_SYSTEM | |
LIBSBML_CAT_UNITS_CONSISTENCY = _libsbml.LIBSBML_CAT_UNITS_CONSISTENCY | |
LIBSBML_CAT_XML = _libsbml.LIBSBML_CAT_XML | |
LIBSBML_CONV_CONVERSION_NOT_AVAILABLE = _libsbml.LIBSBML_CONV_CONVERSION_NOT_AVAILABLE | |
LIBSBML_CONV_INVALID_SRC_DOCUMENT = _libsbml.LIBSBML_CONV_INVALID_SRC_DOCUMENT | |
LIBSBML_CONV_INVALID_TARGET_NAMESPACE = _libsbml.LIBSBML_CONV_INVALID_TARGET_NAMESPACE | |
LIBSBML_CONV_PKG_CONSIDERED_UNKNOWN = _libsbml.LIBSBML_CONV_PKG_CONSIDERED_UNKNOWN | |
LIBSBML_CONV_PKG_CONVERSION_NOT_AVAILABLE = _libsbml.LIBSBML_CONV_PKG_CONVERSION_NOT_AVAILABLE | |
LIBSBML_DOTTED_VERSION = _libsbml.LIBSBML_DOTTED_VERSION | |
LIBSBML_DUPLICATE_ANNOTATION_NS = _libsbml.LIBSBML_DUPLICATE_ANNOTATION_NS | |
LIBSBML_DUPLICATE_OBJECT_ID = _libsbml.LIBSBML_DUPLICATE_OBJECT_ID | |
LIBSBML_INDEX_EXCEEDS_SIZE = _libsbml.LIBSBML_INDEX_EXCEEDS_SIZE | |
LIBSBML_INVALID_ATTRIBUTE_VALUE = _libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE | |
LIBSBML_INVALID_OBJECT = _libsbml.LIBSBML_INVALID_OBJECT | |
LIBSBML_INVALID_XML_OPERATION = _libsbml.LIBSBML_INVALID_XML_OPERATION | |
LIBSBML_LEVEL_MISMATCH = _libsbml.LIBSBML_LEVEL_MISMATCH | |
LIBSBML_NAMESPACES_MISMATCH = _libsbml.LIBSBML_NAMESPACES_MISMATCH | |
LIBSBML_OPERATION_FAILED = _libsbml.LIBSBML_OPERATION_FAILED | |
LIBSBML_OPERATION_SUCCESS = _libsbml.LIBSBML_OPERATION_SUCCESS | |
LIBSBML_OVERRIDE_DISABLED = _libsbml.LIBSBML_OVERRIDE_DISABLED | |
LIBSBML_OVERRIDE_DONT_LOG = _libsbml.LIBSBML_OVERRIDE_DONT_LOG | |
LIBSBML_OVERRIDE_WARNING = _libsbml.LIBSBML_OVERRIDE_WARNING | |
LIBSBML_PKG_CONFLICT = _libsbml.LIBSBML_PKG_CONFLICT | |
LIBSBML_PKG_CONFLICTED_VERSION = _libsbml.LIBSBML_PKG_CONFLICTED_VERSION | |
LIBSBML_PKG_DISABLED = _libsbml.LIBSBML_PKG_DISABLED | |
LIBSBML_PKG_UNKNOWN = _libsbml.LIBSBML_PKG_UNKNOWN | |
LIBSBML_PKG_UNKNOWN_VERSION = _libsbml.LIBSBML_PKG_UNKNOWN_VERSION | |
LIBSBML_PKG_VERSION_MISMATCH = _libsbml.LIBSBML_PKG_VERSION_MISMATCH | |
LIBSBML_SEV_ERROR = _libsbml.LIBSBML_SEV_ERROR | |
LIBSBML_SEV_FATAL = _libsbml.LIBSBML_SEV_FATAL | |
LIBSBML_SEV_INFO = _libsbml.LIBSBML_SEV_INFO | |
LIBSBML_SEV_WARNING = _libsbml.LIBSBML_SEV_WARNING | |
LIBSBML_UNEXPECTED_ATTRIBUTE = _libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE | |
LIBSBML_VERSION = _libsbml.LIBSBML_VERSION | |
LIBSBML_VERSION_MISMATCH = _libsbml.LIBSBML_VERSION_MISMATCH | |
LIBSBML_VERSION_STRING = _libsbml.LIBSBML_VERSION_STRING | |
LibSBMLAdditionalCodesLowerBound = _libsbml.LibSBMLAdditionalCodesLowerBound | |
LocalParameterShadowsId = _libsbml.LocalParameterShadowsId | |
MathResultMustBeNumeric = _libsbml.MathResultMustBeNumeric | |
MetaIdNotValidAttribute = _libsbml.MetaIdNotValidAttribute | |
MissingAnnotationNamespace = _libsbml.MissingAnnotationNamespace | |
MissingEventAssignment = _libsbml.MissingEventAssignment | |
MissingModel = _libsbml.MissingModel | |
MissingOrInconsistentLevel = _libsbml.MissingOrInconsistentLevel | |
MissingOrInconsistentVersion = _libsbml.MissingOrInconsistentVersion | |
MissingSpeciesCompartment = _libsbml.MissingSpeciesCompartment | |
MissingTriggerInEvent = _libsbml.MissingTriggerInEvent | |
MissingXMLAttributeValue = _libsbml.MissingXMLAttributeValue | |
MissingXMLDecl = _libsbml.MissingXMLDecl | |
MissingXMLElements = _libsbml.MissingXMLElements | |
MissingXMLEncoding = _libsbml.MissingXMLEncoding | |
MissingXMLRequiredAttribute = _libsbml.MissingXMLRequiredAttribute | |
MODEL_QUALIFIER = _libsbml.MODEL_QUALIFIER | |
ModelSBOBranchChangedBeyondL2v2 = _libsbml.ModelSBOBranchChangedBeyondL2v2 | |
ModelSBOBranchChangedBeyondL2v3 = _libsbml.ModelSBOBranchChangedBeyondL2v3 | |
ModelSBOBranchChangedInL2v4 = _libsbml.ModelSBOBranchChangedInL2v4 | |
ModelSBOBranchChangedInL3v1 = _libsbml.ModelSBOBranchChangedInL3v1 | |
MultipleAnnotations = _libsbml.MultipleAnnotations | |
MultipleAssignmentOrRateRules = _libsbml.MultipleAssignmentOrRateRules | |
MultipleEventAssignmentsForId = _libsbml.MultipleEventAssignmentsForId | |
MultipleInitAssignments = _libsbml.MultipleInitAssignments | |
MultiplierNotValidAttribute = _libsbml.MultiplierNotValidAttribute | |
MultSpeciesSameTypeInCompartment = _libsbml.MultSpeciesSameTypeInCompartment | |
NameNotValidAttribute = _libsbml.NameNotValidAttribute | |
NeedCompartmentIfHaveSpecies = _libsbml.NeedCompartmentIfHaveSpecies | |
NoBodyInFunctionDef = _libsbml.NoBodyInFunctionDef | |
NoCompartmentOutsideInL3v1 = _libsbml.NoCompartmentOutsideInL3v1 | |
NoCompartmentTypeInL1 = _libsbml.NoCompartmentTypeInL1 | |
NoCompartmentTypeInL2v1 = _libsbml.NoCompartmentTypeInL2v1 | |
NoCompartmentTypeInL3v1 = _libsbml.NoCompartmentTypeInL3v1 | |
NoConcentrationInZeroD = _libsbml.NoConcentrationInZeroD | |
NoConstraintsInL1 = _libsbml.NoConstraintsInL1 | |
NoConstraintsInL2v1 = _libsbml.NoConstraintsInL2v1 | |
NoDelayedEventAssignmentInL2v1 = _libsbml.NoDelayedEventAssignmentInL2v1 | |
NoDelayedEventAssignmentInL2v2 = _libsbml.NoDelayedEventAssignmentInL2v2 | |
NoDelayedEventAssignmentInL2v3 = _libsbml.NoDelayedEventAssignmentInL2v3 | |
NoEventsInL1 = _libsbml.NoEventsInL1 | |
NoEventTimeUnitsInL2v3 = _libsbml.NoEventTimeUnitsInL2v3 | |
NoEventTimeUnitsInL2v4 = _libsbml.NoEventTimeUnitsInL2v4 | |
NoEventTimeUnitsInL3v1 = _libsbml.NoEventTimeUnitsInL3v1 | |
NoFancyStoichiometryMathInL1 = _libsbml.NoFancyStoichiometryMathInL1 | |
NoFunctionDefinitionsInL1 = _libsbml.NoFunctionDefinitionsInL1 | |
NoIdOnSpeciesReferenceInL2v1 = _libsbml.NoIdOnSpeciesReferenceInL2v1 | |
NoInitialAssignmentsInL1 = _libsbml.NoInitialAssignmentsInL1 | |
NoInitialAssignmentsInL2v1 = _libsbml.NoInitialAssignmentsInL2v1 | |
NoKineticLawSubstanceUnitsInL2v2 = _libsbml.NoKineticLawSubstanceUnitsInL2v2 | |
NoKineticLawSubstanceUnitsInL2v3 = _libsbml.NoKineticLawSubstanceUnitsInL2v3 | |
NoKineticLawSubstanceUnitsInL2v4 = _libsbml.NoKineticLawSubstanceUnitsInL2v4 | |
NoKineticLawSubstanceUnitsInL3v1 = _libsbml.NoKineticLawSubstanceUnitsInL3v1 | |
NoKineticLawTimeUnitsInL2v2 = _libsbml.NoKineticLawTimeUnitsInL2v2 | |
NoKineticLawTimeUnitsInL2v3 = _libsbml.NoKineticLawTimeUnitsInL2v3 | |
NoKineticLawTimeUnitsInL2v4 = _libsbml.NoKineticLawTimeUnitsInL2v4 | |
NoKineticLawTimeUnitsInL3v1 = _libsbml.NoKineticLawTimeUnitsInL3v1 | |
NonBoundarySpeciesAssignedAndUsed = _libsbml.NonBoundarySpeciesAssignedAndUsed | |
NonConstantLocalParameter = _libsbml.NonConstantLocalParameter | |
NonConstantSpeciesUsed = _libsbml.NonConstantSpeciesUsed | |
NoNon3DCompartmentsInL1 = _libsbml.NoNon3DCompartmentsInL1 | |
NoNonIntegerStoichiometryInL1 = _libsbml.NoNonIntegerStoichiometryInL1 | |
NonPersistentNotSupported = _libsbml.NonPersistentNotSupported | |
NoReactantsOrProducts = _libsbml.NoReactantsOrProducts | |
NoSBOTermsInL1 = _libsbml.NoSBOTermsInL1 | |
NoSBOTermsInL2v1 = _libsbml.NoSBOTermsInL2v1 | |
NoSpatialUnitsInZeroD = _libsbml.NoSpatialUnitsInZeroD | |
NoSpeciesSpatialSizeUnitsInL1 = _libsbml.NoSpeciesSpatialSizeUnitsInL1 | |
NoSpeciesSpatialSizeUnitsInL2v3 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v3 | |
NoSpeciesSpatialSizeUnitsInL2v4 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v4 | |
NoSpeciesSpatialSizeUnitsInL3v1 = _libsbml.NoSpeciesSpatialSizeUnitsInL3v1 | |
NoSpeciesTypeInL2v1 = _libsbml.NoSpeciesTypeInL2v1 | |
NoSpeciesTypeInL3v1 = _libsbml.NoSpeciesTypeInL3v1 | |
NoSpeciesTypesInL1 = _libsbml.NoSpeciesTypesInL1 | |
NoStoichiometryMathInL3v1 = _libsbml.NoStoichiometryMathInL3v1 | |
NotesContainsDOCTYPE = _libsbml.NotesContainsDOCTYPE | |
NotesContainsXMLDecl = _libsbml.NotesContainsXMLDecl | |
NotesNotInXHTMLNamespace = _libsbml.NotesNotInXHTMLNamespace | |
NoTimeSymbolInFunctionDef = _libsbml.NoTimeSymbolInFunctionDef | |
NotSchemaConformant = _libsbml.NotSchemaConformant | |
NotUTF8 = _libsbml.NotUTF8 | |
NoUnitMultipliersOrOffsetsInL1 = _libsbml.NoUnitMultipliersOrOffsetsInL1 | |
NoUnitOffsetInL2v2 = _libsbml.NoUnitOffsetInL2v2 | |
NoUnitOffsetInL2v3 = _libsbml.NoUnitOffsetInL2v3 | |
NoUnitOffsetInL2v4 = _libsbml.NoUnitOffsetInL2v4 | |
NoUnitOffsetInL3v1 = _libsbml.NoUnitOffsetInL3v1 | |
NoUnitsOnCompartment = _libsbml.NoUnitsOnCompartment | |
NumericOpsNeedNumericArgs = _libsbml.NumericOpsNeedNumericArgs | |
OBJECTIVE_TYPE_MAXIMIZE = _libsbml.OBJECTIVE_TYPE_MAXIMIZE | |
OBJECTIVE_TYPE_MINIMIZE = _libsbml.OBJECTIVE_TYPE_MINIMIZE | |
OBJECTIVE_TYPE_UNKNOWN = _libsbml.OBJECTIVE_TYPE_UNKNOWN | |
ObseleteSBOTerm = _libsbml.ObseleteSBOTerm | |
OffsetNoLongerValid = _libsbml.OffsetNoLongerValid | |
OffsetNotValidAttribute = _libsbml.OffsetNotValidAttribute | |
OneDimensionalCompartmentUnits = _libsbml.OneDimensionalCompartmentUnits | |
OneListOfEventAssignmentsPerEvent = _libsbml.OneListOfEventAssignmentsPerEvent | |
OneListOfPerKineticLaw = _libsbml.OneListOfPerKineticLaw | |
OneListOfUnitsPerUnitDef = _libsbml.OneListOfUnitsPerUnitDef | |
OneMathElementPerConstraint = _libsbml.OneMathElementPerConstraint | |
OneMathElementPerFunc = _libsbml.OneMathElementPerFunc | |
OneMathElementPerInitialAssign = _libsbml.OneMathElementPerInitialAssign | |
OneMathElementPerRule = _libsbml.OneMathElementPerRule | |
OneMathPerDelay = _libsbml.OneMathPerDelay | |
OneMathPerEventAssignment = _libsbml.OneMathPerEventAssignment | |
OneMathPerKineticLaw = _libsbml.OneMathPerKineticLaw | |
OneMathPerPriority = _libsbml.OneMathPerPriority | |
OneMathPerTrigger = _libsbml.OneMathPerTrigger | |
OneMessageElementPerConstraint = _libsbml.OneMessageElementPerConstraint | |
OneOfEachListOf = _libsbml.OneOfEachListOf | |
OneSubElementPerReaction = _libsbml.OneSubElementPerReaction | |
OnlyCompartmentsInListOfCompartments = _libsbml.OnlyCompartmentsInListOfCompartments | |
OnlyConstraintsInListOfConstraints = _libsbml.OnlyConstraintsInListOfConstraints | |
OnlyEventAssignInListOfEventAssign = _libsbml.OnlyEventAssignInListOfEventAssign | |
OnlyEventsInListOfEvents = _libsbml.OnlyEventsInListOfEvents | |
OnlyFuncDefsInListOfFuncDefs = _libsbml.OnlyFuncDefsInListOfFuncDefs | |
OnlyInitAssignsInListOfInitAssigns = _libsbml.OnlyInitAssignsInListOfInitAssigns | |
OnlyLocalParamsInListOfLocalParams = _libsbml.OnlyLocalParamsInListOfLocalParams | |
OnlyOneDelayPerEvent = _libsbml.OnlyOneDelayPerEvent | |
OnlyOneNotesElementAllowed = _libsbml.OnlyOneNotesElementAllowed | |
OnlyOnePriorityPerEvent = _libsbml.OnlyOnePriorityPerEvent | |
OnlyParametersInListOfParameters = _libsbml.OnlyParametersInListOfParameters | |
OnlyReactionsInListOfReactions = _libsbml.OnlyReactionsInListOfReactions | |
OnlyRulesInListOfRules = _libsbml.OnlyRulesInListOfRules | |
OnlySpeciesInListOfSpecies = _libsbml.OnlySpeciesInListOfSpecies | |
OnlyUnitDefsInListOfUnitDefs = _libsbml.OnlyUnitDefsInListOfUnitDefs | |
OnlyUnitsInListOfUnits = _libsbml.OnlyUnitsInListOfUnits | |
OpsNeedCorrectNumberOfArgs = _libsbml.OpsNeedCorrectNumberOfArgs | |
OR_ASSOCIATION = _libsbml.OR_ASSOCIATION | |
OUTPUT_TRANSITION_EFFECT_ASSIGNMENT_LEVEL = _libsbml.OUTPUT_TRANSITION_EFFECT_ASSIGNMENT_LEVEL | |
OUTPUT_TRANSITION_EFFECT_PRODUCTION = _libsbml.OUTPUT_TRANSITION_EFFECT_PRODUCTION | |
OUTPUT_TRANSITION_EFFECT_UNKNOWN = _libsbml.OUTPUT_TRANSITION_EFFECT_UNKNOWN | |
OverdeterminedSystem = _libsbml.OverdeterminedSystem | |
PackageConversionNotSupported = _libsbml.PackageConversionNotSupported | |
PackageNSMustMatch = _libsbml.PackageNSMustMatch | |
PackageRequiredShouldBeFalse = _libsbml.PackageRequiredShouldBeFalse | |
ParameterShouldHaveUnits = _libsbml.ParameterShouldHaveUnits | |
ParameterUnits = _libsbml.ParameterUnits | |
PersistentNotBoolean = _libsbml.PersistentNotBoolean | |
PieceNeedsBoolean = _libsbml.PieceNeedsBoolean | |
PiecewiseNeedsConsistentTypes = _libsbml.PiecewiseNeedsConsistentTypes | |
PriorityLostFromL3 = _libsbml.PriorityLostFromL3 | |
PriorityUnitsNotDimensionless = _libsbml.PriorityUnitsNotDimensionless | |
QualAttributeRequiredMissing = _libsbml.QualAttributeRequiredMissing | |
QualAttributeRequiredMustBeBoolean = _libsbml.QualAttributeRequiredMustBeBoolean | |
QualCompartmentMustReferExisting = _libsbml.QualCompartmentMustReferExisting | |
QualConstantMustBeBool = _libsbml.QualConstantMustBeBool | |
QualConstantQSCannotBeOutput = _libsbml.QualConstantQSCannotBeOutput | |
QualDefaultTermAllowedAttributes = _libsbml.QualDefaultTermAllowedAttributes | |
QualDefaultTermAllowedCoreAttributes = _libsbml.QualDefaultTermAllowedCoreAttributes | |
QualDefaultTermAllowedElements = _libsbml.QualDefaultTermAllowedElements | |
QualDefaultTermResultMustBeInteger = _libsbml.QualDefaultTermResultMustBeInteger | |
QualDefaultTermResultMustBeNonNeg = _libsbml.QualDefaultTermResultMustBeNonNeg | |
QualDuplicateComponentId = _libsbml.QualDuplicateComponentId | |
QualElementNotInNs = _libsbml.QualElementNotInNs | |
QualEmptyLONotAllowed = _libsbml.QualEmptyLONotAllowed | |
QualFuncTermAllowedAttributes = _libsbml.QualFuncTermAllowedAttributes | |
QualFuncTermAllowedCoreAttributes = _libsbml.QualFuncTermAllowedCoreAttributes | |
QualFuncTermAllowedElements = _libsbml.QualFuncTermAllowedElements | |
QualFuncTermOnlyOneMath = _libsbml.QualFuncTermOnlyOneMath | |
QualFuncTermResultMustBeInteger = _libsbml.QualFuncTermResultMustBeInteger | |
QualFuncTermResultMustBeNonNeg = _libsbml.QualFuncTermResultMustBeNonNeg | |
QualFunctionTermBool = _libsbml.QualFunctionTermBool | |
QualInitalLevelNotNegative = _libsbml.QualInitalLevelNotNegative | |
QualInitialLevelCannotExceedMax = _libsbml.QualInitialLevelCannotExceedMax | |
QualInitialLevelMustBeInt = _libsbml.QualInitialLevelMustBeInt | |
QualInputAllowedAttributes = _libsbml.QualInputAllowedAttributes | |
QualInputAllowedCoreAttributes = _libsbml.QualInputAllowedCoreAttributes | |
QualInputAllowedElements = _libsbml.QualInputAllowedElements | |
QualInputConstantCannotBeConsumed = _libsbml.QualInputConstantCannotBeConsumed | |
QualInputNameMustBeString = _libsbml.QualInputNameMustBeString | |
QualInputQSMustBeExistingQS = _libsbml.QualInputQSMustBeExistingQS | |
QualInputSignMustBeSignEnum = _libsbml.QualInputSignMustBeSignEnum | |
QualInputThreshMustBeInteger = _libsbml.QualInputThreshMustBeInteger | |
QualInputThreshMustBeNonNegative = _libsbml.QualInputThreshMustBeNonNegative | |
QualInputTransEffectMustBeInputEffect = _libsbml.QualInputTransEffectMustBeInputEffect | |
QualLOQualSpeciesAllowedAttributes = _libsbml.QualLOQualSpeciesAllowedAttributes | |
QualLOQualSpeciesAllowedElements = _libsbml.QualLOQualSpeciesAllowedElements | |
QualLOTransitiondAllowedElements = _libsbml.QualLOTransitiondAllowedElements | |
QualLOTransitionsAllowedAttributes = _libsbml.QualLOTransitionsAllowedAttributes | |
QualMathCSymbolDisallowed = _libsbml.QualMathCSymbolDisallowed | |
QualMaxLevelMustBeInt = _libsbml.QualMaxLevelMustBeInt | |
QualMaxLevelNotNegative = _libsbml.QualMaxLevelNotNegative | |
QualNameMustBeString = _libsbml.QualNameMustBeString | |
QualNSUndeclared = _libsbml.QualNSUndeclared | |
QualOneListOfTransOrQS = _libsbml.QualOneListOfTransOrQS | |
QualOutputAllowedAttributes = _libsbml.QualOutputAllowedAttributes | |
QualOutputAllowedCoreAttributes = _libsbml.QualOutputAllowedCoreAttributes | |
QualOutputAllowedElements = _libsbml.QualOutputAllowedElements | |
QualOutputConstantMustBeFalse = _libsbml.QualOutputConstantMustBeFalse | |
QualOutputLevelMustBeInteger = _libsbml.QualOutputLevelMustBeInteger | |
QualOutputLevelMustBeNonNegative = _libsbml.QualOutputLevelMustBeNonNegative | |
QualOutputNameMustBeString = _libsbml.QualOutputNameMustBeString | |
QualOutputProductionMustHaveLevel = _libsbml.QualOutputProductionMustHaveLevel | |
QualOutputQSMustBeExistingQS = _libsbml.QualOutputQSMustBeExistingQS | |
QualOutputTransEffectMustBeOutput = _libsbml.QualOutputTransEffectMustBeOutput | |
QualQSAssignedOnlyOnce = _libsbml.QualQSAssignedOnlyOnce | |
QualQualSpeciesAllowedAttributes = _libsbml.QualQualSpeciesAllowedAttributes | |
QualQualSpeciesAllowedCoreAttributes = _libsbml.QualQualSpeciesAllowedCoreAttributes | |
QualQualSpeciesAllowedElements = _libsbml.QualQualSpeciesAllowedElements | |
QualRequiredTrueIfTransitions = _libsbml.QualRequiredTrueIfTransitions | |
QualTransitionAllowedAttributes = _libsbml.QualTransitionAllowedAttributes | |
QualTransitionAllowedCoreAttributes = _libsbml.QualTransitionAllowedCoreAttributes | |
QualTransitionAllowedElements = _libsbml.QualTransitionAllowedElements | |
QualTransitionEmptyLOElements = _libsbml.QualTransitionEmptyLOElements | |
QualTransitionLOElements = _libsbml.QualTransitionLOElements | |
QualTransitionLOFuncTermAttributes = _libsbml.QualTransitionLOFuncTermAttributes | |
QualTransitionLOFuncTermElements = _libsbml.QualTransitionLOFuncTermElements | |
QualTransitionLOFuncTermExceedMax = _libsbml.QualTransitionLOFuncTermExceedMax | |
QualTransitionLOFuncTermNegative = _libsbml.QualTransitionLOFuncTermNegative | |
QualTransitionLOInputAttributes = _libsbml.QualTransitionLOInputAttributes | |
QualTransitionLOInputElements = _libsbml.QualTransitionLOInputElements | |
QualTransitionLOOutputAttributes = _libsbml.QualTransitionLOOutputAttributes | |
QualTransitionLOOutputElements = _libsbml.QualTransitionLOOutputElements | |
QualTransitionNameMustBeString = _libsbml.QualTransitionNameMustBeString | |
QualUnknown = _libsbml.QualUnknown | |
RateRuleCompartmentMismatch = _libsbml.RateRuleCompartmentMismatch | |
RateRuleForConstantEntity = _libsbml.RateRuleForConstantEntity | |
RateRuleParameterMismatch = _libsbml.RateRuleParameterMismatch | |
RateRuleSpeciesMismatch = _libsbml.RateRuleSpeciesMismatch | |
RateRuleStoichiometryMismatch = _libsbml.RateRuleStoichiometryMismatch | |
RDFAboutTagNotMetaid = _libsbml.RDFAboutTagNotMetaid | |
RDFEmptyAboutTag = _libsbml.RDFEmptyAboutTag | |
RDFMissingAboutTag = _libsbml.RDFMissingAboutTag | |
RDFNotCompleteModelHistory = _libsbml.RDFNotCompleteModelHistory | |
RDFNotModelHistory = _libsbml.RDFNotModelHistory | |
RecursiveCompartmentContainment = _libsbml.RecursiveCompartmentContainment | |
RecursiveFunctionDefinition = _libsbml.RecursiveFunctionDefinition | |
RepeatedRule10304 = _libsbml.RepeatedRule10304 | |
RepeatedRule20611 = _libsbml.RepeatedRule20611 | |
RequiredPackagePresent = _libsbml.RequiredPackagePresent | |
RULE_TYPE_INVALID = _libsbml.RULE_TYPE_INVALID | |
RULE_TYPE_RATE = _libsbml.RULE_TYPE_RATE | |
RULE_TYPE_SCALAR = _libsbml.RULE_TYPE_SCALAR | |
SBML_ALGEBRAIC_RULE = _libsbml.SBML_ALGEBRAIC_RULE | |
SBML_ASSIGNMENT_RULE = _libsbml.SBML_ASSIGNMENT_RULE | |
SBML_COMP_DELETION = _libsbml.SBML_COMP_DELETION | |
SBML_COMP_EXTERNALMODELDEFINITION = _libsbml.SBML_COMP_EXTERNALMODELDEFINITION | |
SBML_COMP_MODELDEFINITION = _libsbml.SBML_COMP_MODELDEFINITION | |
SBML_COMP_PORT = _libsbml.SBML_COMP_PORT | |
SBML_COMP_REPLACEDBY = _libsbml.SBML_COMP_REPLACEDBY | |
SBML_COMP_REPLACEDELEMENT = _libsbml.SBML_COMP_REPLACEDELEMENT | |
SBML_COMP_SBASEREF = _libsbml.SBML_COMP_SBASEREF | |
SBML_COMP_SUBMODEL = _libsbml.SBML_COMP_SUBMODEL | |
SBML_COMPARTMENT = _libsbml.SBML_COMPARTMENT | |
SBML_COMPARTMENT_TYPE = _libsbml.SBML_COMPARTMENT_TYPE | |
SBML_COMPARTMENT_VOLUME_RULE = _libsbml.SBML_COMPARTMENT_VOLUME_RULE | |
SBML_CONSTRAINT = _libsbml.SBML_CONSTRAINT | |
SBML_DELAY = _libsbml.SBML_DELAY | |
SBML_DOCUMENT = _libsbml.SBML_DOCUMENT | |
SBML_EVENT = _libsbml.SBML_EVENT | |
SBML_EVENT_ASSIGNMENT = _libsbml.SBML_EVENT_ASSIGNMENT | |
SBML_FBC_ASSOCIATION = _libsbml.SBML_FBC_ASSOCIATION | |
SBML_FBC_FLUXBOUND = _libsbml.SBML_FBC_FLUXBOUND | |
SBML_FBC_FLUXOBJECTIVE = _libsbml.SBML_FBC_FLUXOBJECTIVE | |
SBML_FBC_GENEASSOCIATION = _libsbml.SBML_FBC_GENEASSOCIATION | |
SBML_FBC_OBJECTIVE = _libsbml.SBML_FBC_OBJECTIVE | |
SBML_FUNCTION_DEFINITION = _libsbml.SBML_FUNCTION_DEFINITION | |
SBML_INITIAL_ASSIGNMENT = _libsbml.SBML_INITIAL_ASSIGNMENT | |
SBML_KINETIC_LAW = _libsbml.SBML_KINETIC_LAW | |
SBML_LAYOUT_BOUNDINGBOX = _libsbml.SBML_LAYOUT_BOUNDINGBOX | |
SBML_LAYOUT_COMPARTMENTGLYPH = _libsbml.SBML_LAYOUT_COMPARTMENTGLYPH | |
SBML_LAYOUT_CUBICBEZIER = _libsbml.SBML_LAYOUT_CUBICBEZIER | |
SBML_LAYOUT_CURVE = _libsbml.SBML_LAYOUT_CURVE | |
SBML_LAYOUT_DIMENSIONS = _libsbml.SBML_LAYOUT_DIMENSIONS | |
SBML_LAYOUT_GENERALGLYPH = _libsbml.SBML_LAYOUT_GENERALGLYPH | |
SBML_LAYOUT_GRAPHICALOBJECT = _libsbml.SBML_LAYOUT_GRAPHICALOBJECT | |
SBML_LAYOUT_LAYOUT = _libsbml.SBML_LAYOUT_LAYOUT | |
SBML_LAYOUT_LINESEGMENT = _libsbml.SBML_LAYOUT_LINESEGMENT | |
SBML_LAYOUT_POINT = _libsbml.SBML_LAYOUT_POINT | |
SBML_LAYOUT_REACTIONGLYPH = _libsbml.SBML_LAYOUT_REACTIONGLYPH | |
SBML_LAYOUT_REFERENCEGLYPH = _libsbml.SBML_LAYOUT_REFERENCEGLYPH | |
SBML_LAYOUT_SPECIESGLYPH = _libsbml.SBML_LAYOUT_SPECIESGLYPH | |
SBML_LAYOUT_SPECIESREFERENCEGLYPH = _libsbml.SBML_LAYOUT_SPECIESREFERENCEGLYPH | |
SBML_LAYOUT_TEXTGLYPH = _libsbml.SBML_LAYOUT_TEXTGLYPH | |
SBML_LIST_OF = _libsbml.SBML_LIST_OF | |
SBML_LOCAL_PARAMETER = _libsbml.SBML_LOCAL_PARAMETER | |
SBML_MODEL = _libsbml.SBML_MODEL | |
SBML_MODIFIER_SPECIES_REFERENCE = _libsbml.SBML_MODIFIER_SPECIES_REFERENCE | |
SBML_PARAMETER = _libsbml.SBML_PARAMETER | |
SBML_PARAMETER_RULE = _libsbml.SBML_PARAMETER_RULE | |
SBML_PRIORITY = _libsbml.SBML_PRIORITY | |
SBML_QUAL_DEFAULT_TERM = _libsbml.SBML_QUAL_DEFAULT_TERM | |
SBML_QUAL_FUNCTION_TERM = _libsbml.SBML_QUAL_FUNCTION_TERM | |
SBML_QUAL_INPUT = _libsbml.SBML_QUAL_INPUT | |
SBML_QUAL_OUTPUT = _libsbml.SBML_QUAL_OUTPUT | |
SBML_QUAL_QUALITATIVE_SPECIES = _libsbml.SBML_QUAL_QUALITATIVE_SPECIES | |
SBML_QUAL_TRANSITION = _libsbml.SBML_QUAL_TRANSITION | |
SBML_RATE_RULE = _libsbml.SBML_RATE_RULE | |
SBML_REACTION = _libsbml.SBML_REACTION | |
SBML_RULE = _libsbml.SBML_RULE | |
SBML_SPECIES = _libsbml.SBML_SPECIES | |
SBML_SPECIES_CONCENTRATION_RULE = _libsbml.SBML_SPECIES_CONCENTRATION_RULE | |
SBML_SPECIES_REFERENCE = _libsbml.SBML_SPECIES_REFERENCE | |
SBML_SPECIES_TYPE = _libsbml.SBML_SPECIES_TYPE | |
SBML_STOICHIOMETRY_MATH = _libsbml.SBML_STOICHIOMETRY_MATH | |
SBML_TRIGGER = _libsbml.SBML_TRIGGER | |
SBML_UNIT = _libsbml.SBML_UNIT | |
SBML_UNIT_DEFINITION = _libsbml.SBML_UNIT_DEFINITION | |
SBML_UNKNOWN = _libsbml.SBML_UNKNOWN | |
SBMLCodesUpperBound = _libsbml.SBMLCodesUpperBound | |
SBMLNamespaceInAnnotation = _libsbml.SBMLNamespaceInAnnotation | |
SBOTermNotUniversalInL2v2 = _libsbml.SBOTermNotUniversalInL2v2 | |
SBOTermNotValidAttributeBeforeL2V2 = _libsbml.SBOTermNotValidAttributeBeforeL2V2 | |
SBOTermNotValidAttributeBeforeL2V3 = _libsbml.SBOTermNotValidAttributeBeforeL2V3 | |
SpatialSizeUnitsNotValidAttribute = _libsbml.SpatialSizeUnitsNotValidAttribute | |
SpatialSizeUnitsRemoved = _libsbml.SpatialSizeUnitsRemoved | |
SpatialUnitsInOneD = _libsbml.SpatialUnitsInOneD | |
SpatialUnitsInThreeD = _libsbml.SpatialUnitsInThreeD | |
SpatialUnitsInTwoD = _libsbml.SpatialUnitsInTwoD | |
SPECIES_ROLE_ACTIVATOR = _libsbml.SPECIES_ROLE_ACTIVATOR | |
SPECIES_ROLE_INHIBITOR = _libsbml.SPECIES_ROLE_INHIBITOR | |
SPECIES_ROLE_MODIFIER = _libsbml.SPECIES_ROLE_MODIFIER | |
SPECIES_ROLE_PRODUCT = _libsbml.SPECIES_ROLE_PRODUCT | |
SPECIES_ROLE_SIDEPRODUCT = _libsbml.SPECIES_ROLE_SIDEPRODUCT | |
SPECIES_ROLE_SIDESUBSTRATE = _libsbml.SPECIES_ROLE_SIDESUBSTRATE | |
SPECIES_ROLE_SUBSTRATE = _libsbml.SPECIES_ROLE_SUBSTRATE | |
SPECIES_ROLE_UNDEFINED = _libsbml.SPECIES_ROLE_UNDEFINED | |
SpeciesCompartmentRequiredInL1 = _libsbml.SpeciesCompartmentRequiredInL1 | |
SpeciesInvalidExtentUnits = _libsbml.SpeciesInvalidExtentUnits | |
SpeciesShouldHaveValue = _libsbml.SpeciesShouldHaveValue | |
SpeciesTypeNotValidAttribute = _libsbml.SpeciesTypeNotValidAttribute | |
SpeciesTypeNotValidComponent = _libsbml.SpeciesTypeNotValidComponent | |
StoichiometryMathNotValidComponent = _libsbml.StoichiometryMathNotValidComponent | |
StoichiometryMathNotYetSupported = _libsbml.StoichiometryMathNotYetSupported | |
StrictSBORequiredInL2v2 = _libsbml.StrictSBORequiredInL2v2 | |
StrictSBORequiredInL2v3 = _libsbml.StrictSBORequiredInL2v3 | |
StrictUnitsRequiredInL1 = _libsbml.StrictUnitsRequiredInL1 | |
StrictUnitsRequiredInL2v1 = _libsbml.StrictUnitsRequiredInL2v1 | |
StrictUnitsRequiredInL2v2 = _libsbml.StrictUnitsRequiredInL2v2 | |
StrictUnitsRequiredInL2v3 = _libsbml.StrictUnitsRequiredInL2v3 | |
SubstanceUnitsOnSpecies = _libsbml.SubstanceUnitsOnSpecies | |
SubsUnitsAllowedInKL = _libsbml.SubsUnitsAllowedInKL | |
SubsUnitsNoLongerValid = _libsbml.SubsUnitsNoLongerValid | |
ThreeDimensionalCompartmentUnits = _libsbml.ThreeDimensionalCompartmentUnits | |
TimeUnitsAllowedInKL = _libsbml.TimeUnitsAllowedInKL | |
TimeUnitsEvent = _libsbml.TimeUnitsEvent | |
TimeUnitsNoLongerValid = _libsbml.TimeUnitsNoLongerValid | |
TimeUnitsRemoved = _libsbml.TimeUnitsRemoved | |
TriggerMathNotBoolean = _libsbml.TriggerMathNotBoolean | |
TwoDimensionalCompartmentUnits = _libsbml.TwoDimensionalCompartmentUnits | |
UnclosedXMLToken = _libsbml.UnclosedXMLToken | |
UndeclaredExtentUnitsL3 = _libsbml.UndeclaredExtentUnitsL3 | |
UndeclaredObjectUnitsL3 = _libsbml.UndeclaredObjectUnitsL3 | |
UndeclaredSpeciesInStoichMath = _libsbml.UndeclaredSpeciesInStoichMath | |
UndeclaredSpeciesRef = _libsbml.UndeclaredSpeciesRef | |
UndeclaredTimeUnitsL3 = _libsbml.UndeclaredTimeUnitsL3 | |
UndeclaredUnits = _libsbml.UndeclaredUnits | |
UndefinedOutsideCompartment = _libsbml.UndefinedOutsideCompartment | |
UndefinedXMLEntity = _libsbml.UndefinedXMLEntity | |
UninterpretableXMLContent = _libsbml.UninterpretableXMLContent | |
UNIT_KIND_AMPERE = _libsbml.UNIT_KIND_AMPERE | |
UNIT_KIND_AVOGADRO = _libsbml.UNIT_KIND_AVOGADRO | |
UNIT_KIND_BECQUEREL = _libsbml.UNIT_KIND_BECQUEREL | |
UNIT_KIND_CANDELA = _libsbml.UNIT_KIND_CANDELA | |
UNIT_KIND_CELSIUS = _libsbml.UNIT_KIND_CELSIUS | |
UNIT_KIND_COULOMB = _libsbml.UNIT_KIND_COULOMB | |
UNIT_KIND_DIMENSIONLESS = _libsbml.UNIT_KIND_DIMENSIONLESS | |
UNIT_KIND_FARAD = _libsbml.UNIT_KIND_FARAD | |
UNIT_KIND_GRAM = _libsbml.UNIT_KIND_GRAM | |
UNIT_KIND_GRAY = _libsbml.UNIT_KIND_GRAY | |
UNIT_KIND_HENRY = _libsbml.UNIT_KIND_HENRY | |
UNIT_KIND_HERTZ = _libsbml.UNIT_KIND_HERTZ | |
UNIT_KIND_INVALID = _libsbml.UNIT_KIND_INVALID | |
UNIT_KIND_ITEM = _libsbml.UNIT_KIND_ITEM | |
UNIT_KIND_JOULE = _libsbml.UNIT_KIND_JOULE | |
UNIT_KIND_KATAL = _libsbml.UNIT_KIND_KATAL | |
UNIT_KIND_KELVIN = _libsbml.UNIT_KIND_KELVIN | |
UNIT_KIND_KILOGRAM = _libsbml.UNIT_KIND_KILOGRAM | |
UNIT_KIND_LITER = _libsbml.UNIT_KIND_LITER | |
UNIT_KIND_LITRE = _libsbml.UNIT_KIND_LITRE | |
UNIT_KIND_LUMEN = _libsbml.UNIT_KIND_LUMEN | |
UNIT_KIND_LUX = _libsbml.UNIT_KIND_LUX | |
UNIT_KIND_METER = _libsbml.UNIT_KIND_METER | |
UNIT_KIND_METRE = _libsbml.UNIT_KIND_METRE | |
UNIT_KIND_MOLE = _libsbml.UNIT_KIND_MOLE | |
UNIT_KIND_NEWTON = _libsbml.UNIT_KIND_NEWTON | |
UNIT_KIND_OHM = _libsbml.UNIT_KIND_OHM | |
UNIT_KIND_PASCAL = _libsbml.UNIT_KIND_PASCAL | |
UNIT_KIND_RADIAN = _libsbml.UNIT_KIND_RADIAN | |
UNIT_KIND_SECOND = _libsbml.UNIT_KIND_SECOND | |
UNIT_KIND_SIEMENS = _libsbml.UNIT_KIND_SIEMENS | |
UNIT_KIND_SIEVERT = _libsbml.UNIT_KIND_SIEVERT | |
UNIT_KIND_STERADIAN = _libsbml.UNIT_KIND_STERADIAN | |
UNIT_KIND_TESLA = _libsbml.UNIT_KIND_TESLA | |
UNIT_KIND_VOLT = _libsbml.UNIT_KIND_VOLT | |
UNIT_KIND_WATT = _libsbml.UNIT_KIND_WATT | |
UNIT_KIND_WEBER = _libsbml.UNIT_KIND_WEBER | |
UnitsNotValidAttribute = _libsbml.UnitsNotValidAttribute | |
UNKNOWN_ASSOCIATION = _libsbml.UNKNOWN_ASSOCIATION | |
UNKNOWN_QUALIFIER = _libsbml.UNKNOWN_QUALIFIER | |
UnknownCoreAttribute = _libsbml.UnknownCoreAttribute | |
UnknownError = _libsbml.UnknownError | |
UnknownPackageAttribute = _libsbml.UnknownPackageAttribute | |
UnrecognisedSBOTerm = _libsbml.UnrecognisedSBOTerm | |
UnrecognizedElement = _libsbml.UnrecognizedElement | |
UnrecognizedXMLElement = _libsbml.UnrecognizedXMLElement | |
UnrecognizedXMLParserCode = _libsbml.UnrecognizedXMLParserCode | |
UnrequiredPackagePresent = _libsbml.UnrequiredPackagePresent | |
UpperUnitBound = _libsbml.UpperUnitBound | |
ValuesFromTriggerTimeNeedDelay = _libsbml.ValuesFromTriggerTimeNeedDelay | |
VariableNotValidAttribute = _libsbml.VariableNotValidAttribute | |
VersionPositiveInteger = _libsbml.VersionPositiveInteger | |
VolumeLitreDefExponentNotOne = _libsbml.VolumeLitreDefExponentNotOne | |
VolumeMetreDefExponentNot3 = _libsbml.VolumeMetreDefExponentNot3 | |
XMLAttributeTypeMismatch = _libsbml.XMLAttributeTypeMismatch | |
XMLBadColon = _libsbml.XMLBadColon | |
XMLBadNumber = _libsbml.XMLBadNumber | |
XMLBadUTF8Content = _libsbml.XMLBadUTF8Content | |
XMLContentEmpty = _libsbml.XMLContentEmpty | |
XMLEmptyValueNotPermitted = _libsbml.XMLEmptyValueNotPermitted | |
XMLErrorCodesUpperBound = _libsbml.XMLErrorCodesUpperBound | |
XMLExpectedQuotedString = _libsbml.XMLExpectedQuotedString | |
XMLFileOperationError = _libsbml.XMLFileOperationError | |
XMLFileUnreadable = _libsbml.XMLFileUnreadable | |
XMLFileUnwritable = _libsbml.XMLFileUnwritable | |
XMLNetworkAccessError = _libsbml.XMLNetworkAccessError | |
XMLOutOfMemory = _libsbml.XMLOutOfMemory | |
XMLTagMismatch = _libsbml.XMLTagMismatch | |
XMLTranscoderError = _libsbml.XMLTranscoderError | |
XMLUnexpectedEOF = _libsbml.XMLUnexpectedEOF | |
XMLUnknownError = _libsbml.XMLUnknownError | |
ZeroDCompartmentContainment = _libsbml.ZeroDCompartmentContainment | |
ZeroDimensionalCompartmentConst = _libsbml.ZeroDimensionalCompartmentConst | |
ZeroDimensionalCompartmentSize = _libsbml.ZeroDimensionalCompartmentSize | |
ZeroDimensionalCompartmentUnits = _libsbml.ZeroDimensionalCompartmentUnits | |
def libsbml.Association_parseInfixAssociation | ( | args | ) |
Python method signature(s):
Association_parseInfixAssociation(string association)Association
Parses a gene association in infix format. These look like this:
(b2422) and (b2425) and (b2423) and (b2424) or (b2422) and (b2423) and (b2424) and (b2413) and (b3917)
None
in case of an error. def libsbml.CompBase_getParentModel | ( | args | ) |
def libsbml.CompExtension_getDefaultLevel | ( | ) |
Python method signature(s):
CompExtension_getDefaultLevel()long
Returns the default SBML Level this extension.
def libsbml.CompExtension_getDefaultPackageVersion | ( | ) |
Python method signature(s):
CompExtension_getDefaultPackageVersion()long
Returns the default SBML version this extension.
def libsbml.CompExtension_getDefaultVersion | ( | ) |
Python method signature(s):
CompExtension_getDefaultVersion()long
Returns the default SBML Version this extension.
def libsbml.CompExtension_getPackageName | ( | ) |
Python method signature(s):
CompExtension_getPackageName()string
Returns the package name of this extension.
def libsbml.CompExtension_getXmlnsL3V1V1 | ( | ) |
Python method signature(s):
CompExtension_getXmlnsL3V1V1()string
Returns URI of supported versions of this package.
def libsbml.deleteLayoutAnnotation | ( | args | ) |
def libsbml.deleteLayoutIdAnnotation | ( | args | ) |
def libsbml.endl | ( | args | ) |
Python method signature(s):
endl(ostream s)ostream
Insert a newline character into the given C++ stream s
.
This is a wrapper around the underlying C++ OStream method endl
. It inserts a newline into the stream passed as argument. Additionally, it flushes buffered streams.
s | the stream to which the newline should be written. |
s
. def libsbml.FbcExtension_getDefaultLevel | ( | ) |
Python method signature(s):
FbcExtension_getDefaultLevel()long
Returns the default SBML Level this extension.
def libsbml.FbcExtension_getDefaultPackageVersion | ( | ) |
Python method signature(s):
FbcExtension_getDefaultPackageVersion()long
Returns the default SBML version this extension.
def libsbml.FbcExtension_getDefaultVersion | ( | ) |
Python method signature(s):
FbcExtension_getDefaultVersion()long
Returns the default SBML Version this extension.
def libsbml.FbcExtension_getPackageName | ( | ) |
Python method signature(s):
FbcExtension_getPackageName()string
Returns the package name of this extension.
def libsbml.FbcExtension_getXmlnsL3V1V1 | ( | ) |
Python method signature(s):
FbcExtension_getXmlnsL3V1V1()string
Returns URI of supported versions of this package.
def libsbml.float_array_frompointer | ( | args | ) |
Python method signature(s):
double_array_frompointer (float * t)float_array
def libsbml.flush | ( | args | ) |
Python method signature(s):
flush(ostream s)ostream
Flush the given C++ stream s
.
This is a wrapper around the underlying C++ OStream method flush
. It flush any pending output in the stream passed as argument.
s | the stream to be flushed. |
s
. def libsbml.formulaToString | ( | args | ) |
Python method signature(s):
formulaToString(ASTNode tree)string *
Converts an AST to a string representation of a formula using a syntax basically derived from SBML Level 1.
Note that this facility is provided as a convenience by libSBML—the MathML standard does not actually define a 'string-form' equivalent to MathML expression trees, so the choice of formula syntax is somewhat arbitrary. The approach taken by libSBML is to use the syntax defined by SBML Level 1 (which in fact used a text-string representation of formulas and not MathML). This formula syntax is based mostly on C programming syntax, and may contain operators, function calls, symbols, and white space characters. The following table provides the precedence rules for the different entities that may appear in formula strings.
Token | Operation | Class | Precedence | Associates |
---|---|---|---|---|
name | symbol reference | operand | 6 | n/a |
( expression) | expression grouping | operand | 6 | n/a |
f( ...) | function call | prefix | 6 | left |
- | negation | unary | 5 | right |
^ | power | binary | 4 | left |
* | multiplication | binary | 3 | left |
/ | divison | binary | 3 | left |
+ | addition | binary | 2 | left |
- | subtraction | binary | 2 | left |
, | argument delimiter | binary | 1 | left |
In the table above, operand implies the construct is an operand, prefix implies the operation is applied to the following arguments, unary implies there is one argument, and binary implies there are two arguments. The values in the Precedence column show how the order of different types of operation are determined. For example, the expression a * b + c
is evaluated as (a * b) + c
because the *
operator has higher precedence. The Associates column shows how the order of similar precedence operations is determined; for example, a - b + c
is evaluated as (a - b) + c
because the +
and -
operators are left-associative.
The function call syntax consists of a function name, followed by optional white space, followed by an opening parenthesis token, followed by a sequence of zero or more arguments separated by commas (with each comma optionally preceded and/or followed by zero or more white space characters, followed by a closing parenthesis token. The function name must be chosen from one of the pre-defined functions in SBML or a user-defined function in the model. The following table lists the names of certain common mathematical functions; this table corresponds to Table 6 in the SBML Level 1 Version 2 specification:
Name | Args | Formula or meaning | Argument Constraints | Result constraints |
---|---|---|---|---|
abs | x | absolute value of x | ||
acos | x | arc cosine of x in radians | -1.0 ≤ x ≤ 1.0 | 0 ≤ acos(x) ≤ π |
asin | x | arc sine of x in radians | -1.0 ≤ x ≤ 1.0 | 0 ≤ asin(x) ≤ π |
atan | x | arc tangent of x in radians | 0 ≤ atan(x) ≤ π | |
ceil | x | smallest number not less than x whose value is an exact integer | ||
cos | x | cosine of x | ||
exp | x | e x, where e is the base of the natural logarithm | ||
floor | x | the largest number not greater than x whose value is an exact integer | ||
log | x | natural logarithm of x | x > 0 | |
log10 | x | base 10 logarithm of x | x > 0 | |
pow | x, y | x y | ||
sqr | x | x2 | ||
sqrt | x | √x | x > 0 | sqrt(x) ≥ 0 |
sin | x | sine of x | ||
tan | x | tangent of x | x ≠ n*π/2, for odd integer n |
log(x)
represents the natural logarithm, whereas in MathML, the natural logarithm is <ln/>
. Application writers are urged to be careful when translating between text forms and MathML forms, especially if they provide a direct text-string input facility to users of their software systems.tree | the AST to be converted. |
def libsbml.getCoreTypeFromName | ( | args | ) |
Python method signature(s):
getCoreTypeFromName(string name)int
def libsbml.getDefaultL3ParserSettings | ( | ) |
Python method signature(s):
getDefaultL3ParserSettings()L3ParserSettings
Returns a copy of the default parser settings used bylibsbml.parseL3Formula().
The settings structure allows callers to change the following parsing behaviors:
<ci> pi </ci>
instead of the construct <pi/>
. id
as the identifier of a unit of measurement associated with the number, or whether to treat the case as an error. For more details about the parser, please see the definition of L3ParserSettings and libsbml.parseL3Formula().
def libsbml.getLastParseL3Error | ( | ) |
Python method signature(s):
getLastParseL3Error()string *
Returns the last error reported by the parser.
Iflibsbml.parseL3Formula(), libsbml.parseL3FormulaWithSettings(), or libsbml.parseL3FormulaWithModel() return None
, an error is set internally which is accessible via this function.
def libsbml.getLibSBMLDependencyVersionOf | ( | args | ) |
Python method signature(s):
getLibSBMLDependencyVersionOf(char * option)string *
Returns the version string for the dependency library used.
option | the library for which the version should be retrieved, this can be one of 'expat', 'libxml', 'xerces-c', 'bzip2', 'zip' |
def libsbml.getLibSBMLDottedVersion | ( | ) |
Python method signature(s):
getLibSBMLDottedVersion()string *
Returns the version number of this copy of libSBML as a string.
def libsbml.getLibSBMLVersion | ( | ) |
Python method signature(s):
getLibSBMLVersion()int
Returns the version number of this copy of libSBML as an integer.
def libsbml.getLibSBMLVersionString | ( | ) |
Python method signature(s):
getLibSBMLVersionString()string *
Returns the version number of this copy of libSBML as a string without periods.
def libsbml.getNameFromCoreType | ( | args | ) |
Python method signature(s):
getNameFromCoreType(int type)string *
def libsbml.GroupsExtension_getDefaultLevel | ( | ) |
Python method signature(s):
GroupsExtension_getDefaultLevel()long
Returns the default SBML Level this extension.
def libsbml.GroupsExtension_getDefaultPackageVersion | ( | ) |
Python method signature(s):
GroupsExtension_getDefaultPackageVersion()long
Returns the default SBML version this extension.
def libsbml.GroupsExtension_getDefaultVersion | ( | ) |
Python method signature(s):
GroupsExtension_getDefaultVersion()long
Returns the default SBML Version this extension.
def libsbml.GroupsExtension_getPackageName | ( | ) |
Python method signature(s):
GroupsExtension_getPackageName()string
Returns the package name of this extension.
def libsbml.GroupsExtension_getXmlnsL3V1V1 | ( | ) |
Python method signature(s):
GroupsExtension_getXmlnsL3V1V1()string
Returns URI of supported versions of this package.
def libsbml.int_array_frompointer | ( | args | ) |
Python method signature(s):
int_array_frompointer(int * t)int_array
def libsbml.isCoreTopLevelMathMLFunctionNodeTag | ( | args | ) |
Python method signature(s):
isCoreTopLevelMathMLFunctionNodeTag(string name)bool
def libsbml.isCoreTopLevelMathMLNumberNodeTag | ( | args | ) |
Python method signature(s):
isCoreTopLevelMathMLNumberNodeTag(string name)bool
def libsbml.isLibSBMLCompiledWith | ( | args | ) |
Python method signature(s):
isLibSBMLCompiledWith(char * option)int
Returns an indication whether libSBML has been compiled with against a specific library.
option | the library to test against, this can be one of 'expat', 'libxml', 'xerces-c', 'bzip2', 'zip' |
def libsbml.LayoutExtension_getDefaultLevel | ( | ) |
Python method signature(s):
LayoutExtension_getDefaultLevel()long
Returns the default SBML Level this extension.
def libsbml.LayoutExtension_getDefaultPackageVersion | ( | ) |
Python method signature(s):
LayoutExtension_getDefaultPackageVersion()long
Returns the default SBML version this extension.
def libsbml.LayoutExtension_getDefaultVersion | ( | ) |
Python method signature(s):
LayoutExtension_getDefaultVersion()long
Returns the default SBML Version this extension.
def libsbml.LayoutExtension_getPackageName | ( | ) |
Python method signature(s):
LayoutExtension_getPackageName()string
Returns the package name of this extension.
def libsbml.LayoutExtension_getXmlnsL2 | ( | ) |
Python method signature(s):
LayoutExtension_getXmlnsL2()string
def libsbml.LayoutExtension_getXmlnsL3V1V1 | ( | ) |
Python method signature(s):
LayoutExtension_getXmlnsL3V1V1()string
Returns URI of supported versions of this package.
def libsbml.LayoutExtension_getXmlnsXSI | ( | ) |
Python method signature(s):
LayoutExtension_getXmlnsXSI()string
def libsbml.OperationReturnValue_toString | ( | args | ) |
Python method signature(s):
OperationReturnValue_toString(int returnValue)string *
This method takes an SBML operation return value and returns a string representing the code.
returnValue | the operation return value to convert to a string |
def libsbml.parseFormula | ( | args | ) |
Python method signature(s):
parseFormula(char * formula)ASTNode
Parses the given SBML formula and returns a representation of it as an Abstract Syntax Tree (AST).
Note that this facility is provided as a convenience by libSBML—the MathML standard does not actually define a 'string-form' equivalent to MathML expression trees, so the choice of formula syntax is somewhat arbitrary. The approach taken by libSBML is to use the syntax defined by SBML Level 1 (which in fact used a text-string representation of formulas and not MathML). This formula syntax is based mostly on C programming syntax, and may contain operators, function calls, symbols, and white space characters. The following table provides the precedence rules for the different entities that may appear in formula strings.
Token | Operation | Class | Precedence | Associates |
---|---|---|---|---|
name | symbol reference | operand | 6 | n/a |
( expression) | expression grouping | operand | 6 | n/a |
f( ...) | function call | prefix | 6 | left |
- | negation | unary | 5 | right |
^ | power | binary | 4 | left |
* | multiplication | binary | 3 | left |
/ | divison | binary | 3 | left |
+ | addition | binary | 2 | left |
- | subtraction | binary | 2 | left |
, | argument delimiter | binary | 1 | left |
In the table above, operand implies the construct is an operand, prefix implies the operation is applied to the following arguments, unary implies there is one argument, and binary implies there are two arguments. The values in the Precedence column show how the order of different types of operation are determined. For example, the expression a * b + c
is evaluated as (a * b) + c
because the *
operator has higher precedence. The Associates column shows how the order of similar precedence operations is determined; for example, a - b + c
is evaluated as (a - b) + c
because the +
and -
operators are left-associative.
The function call syntax consists of a function name, followed by optional white space, followed by an opening parenthesis token, followed by a sequence of zero or more arguments separated by commas (with each comma optionally preceded and/or followed by zero or more white space characters, followed by a closing parenthesis token. The function name must be chosen from one of the pre-defined functions in SBML or a user-defined function in the model. The following table lists the names of certain common mathematical functions; this table corresponds to Table 6 in the SBML Level 1 Version 2 specification:
Name | Args | Formula or meaning | Argument Constraints | Result constraints |
---|---|---|---|---|
abs | x | absolute value of x | ||
acos | x | arc cosine of x in radians | -1.0 ≤ x ≤ 1.0 | 0 ≤ acos(x) ≤ π |
asin | x | arc sine of x in radians | -1.0 ≤ x ≤ 1.0 | 0 ≤ asin(x) ≤ π |
atan | x | arc tangent of x in radians | 0 ≤ atan(x) ≤ π | |
ceil | x | smallest number not less than x whose value is an exact integer | ||
cos | x | cosine of x | ||
exp | x | e x, where e is the base of the natural logarithm | ||
floor | x | the largest number not greater than x whose value is an exact integer | ||
log | x | natural logarithm of x | x > 0 | |
log10 | x | base 10 logarithm of x | x > 0 | |
pow | x, y | x y | ||
sqr | x | x2 | ||
sqrt | x | √x | x > 0 | sqrt(x) ≥ 0 |
sin | x | sine of x | ||
tan | x | tangent of x | x ≠ n*π/2, for odd integer n |
log(x)
represents the natural logarithm, whereas in MathML, the natural logarithm is <ln/>
. Application writers are urged to be careful when translating between text forms and MathML forms, especially if they provide a direct text-string input facility to users of their software systems.formula | the text-string formula expression to be parsed |
formula
, or None
if an error occurred in parsing the formuladef libsbml.parseL3Formula | ( | args | ) |
Python method signature(s):
parseL3Formula(char * formula)ASTNode
Parses the given mathematical formula and returns a representation of it as an Abstract Syntax Tree (AST).
The following are the differences in the formula syntax supported by the 'L3' versions of the formula parsers and formatters, compared to what is supported bylibsbml.parseFormula() and libsbml.formulaToL3String():
SId
in the SBML specifications). The whitespace between number and unit is optional.&&
, ||
, !
, and !=
may be used.%
and will produce a piecewise function in the MathML.arc
as a prefix or simply a
; in other words, both arccsc
and acsc
are interpreted as the operator arccosecant defined in MathML. (Many functions in the SBML Level 1 infix-notation parser implemented bylibsbml.parseFormula() are defined this way as well, but not all.)(integer/integer)No spaces are allowed in this construct; in other words, "<code>(3 / 4)</code>" will be parsed into the MathML
<divide>
construct rather than a rational number. The general number syntax allows you to assign units to a rational number, e.g., "<code>(3/4) ml</code>". (If the string is a division, units are not interpreted in this way.)log
with a single argument ("<code>log(x)</code>") can be parsed as log10(x)
, ln(x)
, or treated as an error, as desired. avogadro
can be parsed as a MathML csymbol or as an identifier. SId
) from that model are used in preference to pre-defined MathML definitions. More precisely, the Model entities whose identifiers will shadow identical symbols in the mathematical formula are: Species, Compartment, Parameter, Reaction, and SpeciesReference. For instance, if the parser is given a Model containing a Species with the identifier "<code>pi</code>", and the formula to be parsed is "<code>3*pi</code>", the MathML produced will contain the construct <ci> pi </ci>
instead of the construct <pi/>
. SId
values of user-defined functions present in the model will be used preferentially over pre-defined MathML functions. For example, if the passed-in Model contains a FunctionDefinition with the identifier "<code>sin</code>", that function will be used instead of the predefined MathML function <sin/>
. The parser function libsbml.parseL3FormulaWithSettings() returns the root node of the AST corresponding to the formula given as the argument. If the formula contains a syntax error, the function will return None
instead. When None
is returned, an error is set; information about the error can be retrieved using libsbml.getLastParseL3Error().
Note that this facility and the SBML Level 1-based libsbml.parseFormula() are provided as a convenience by libSBML—the MathML standard does not actually define a 'string-form' equivalent to MathML expressions, so the choice of formula syntax is arbitrary. The approach taken by libSBML is to start with the syntax defined by SBML Level 1 (which in fact used a text-string representation of formulas, and not MathML), and expand it to include the above functionality. This formula syntax is based mostly on C programming syntax, and may contain operators, function calls, symbols, and white space characters. The following table provides the precedence rules for the different entities that may appear in formula strings.
Token | Operation | Class | Precedence | Associates |
---|---|---|---|---|
name | symbol reference | operand | 8 | n/a |
( expression) | expression grouping | operand | 8 | n/a |
f( ...) | function call | prefix | 8 | left |
^ | power | binary | 7 | left |
-, ! | negation and boolean 'not' | unary | 6 | right |
*, /, % | multiplication, division, and modulo | binary | 5 | left |
+, - | addition and subtraction | binary | 4 | left |
==, <, >, <=, >=, != | boolean equality, inequality, and comparison | binary | 3 | left |
&&, || | boolean 'and' and 'or' | binary | 2 | left |
, | argument delimiter | binary | 1 | left |
In the table above, operand implies the construct is an operand, prefix implies the operation is applied to the following arguments, unary implies there is one argument, and binary implies there are two arguments. The values in the Precedence column show how the order of different types of operation are determined. For example, the expression a + b * c
is evaluated as a + (b * c)
because the *
operator has higher precedence. The Associates column shows how the order of similar precedence operations is determined; for example, a && b || c
is evaluated as (a && b) || c
because the &&
and ||
operators are left-associative and have the same precedence.
The function call syntax consists of a function name, followed by optional white space, followed by an opening parenthesis token, followed by a sequence of zero or more arguments separated by commas (with each comma optionally preceded and/or followed by zero or more white space characters), followed by a closing parenthesis token. The function name must be chosen from one of the pre-defined functions in SBML or a user-defined function in the model. The following table lists the names of certain common mathematical functions; this table corresponds to Table 6 in the SBML Level 1 Version 2 specification with additions based on the functions added in SBML Level 2 and Level 3:
Name | Argument(s) | Formula or meaning | Argument Constraints | Result constraints |
---|---|---|---|---|
abs |
x | Absolute value of x. | ||
acos , arccos |
x | Arccosine of x in radians. | -1.0 ≤ x ≤ 1.0 | 0 ≤ acos(x) ≤ π |
acosh , arccosh |
x | Hyperbolic arccosine of x in radians. | ||
acot , arccot |
x | Arccotangent of x in radians. | ||
acoth , arccoth |
x | Hyperbolic arccotangent of x in radians. | ||
acsc , arccsc |
x | Arccosecant of x in radians. | ||
acsch , arccsch |
x | Hyperbolic arccosecant of x in radians. | ||
asec , arcsec |
x | Arcsecant of x in radians. | ||
asech , arcsech |
x | Hyperbolic arcsecant of x in radians. | ||
asin , arcsin |
x | Arcsine of x in radians. | -1.0 ≤ x ≤ 1.0 | 0 ≤ asin(x) ≤ π |
atan , arctan |
x | Arctangent of x in radians. | 0 ≤ atan(x) ≤ π | |
atanh , arctanh |
x | Hyperbolic arctangent of x in radians. | ||
ceil , ceiling |
x | Smallest number not less than x whose value is an exact integer. | ||
cos |
x | Cosine of x | ||
cosh |
x | Hyperbolic cosine of x. | ||
cot |
x | Cotangent of x. | ||
coth |
x | Hyperbolic cotangent of x. | ||
csc |
x | Cosecant of x. | ||
csch |
x | Hyperbolic cosecant of x. | ||
delay |
x, y | The value of x at y time units in the past. | ||
factorial |
n | The factorial of n. Factorials are defined by n! = n*(n-1)* ... * 1. | n must be an integer. | |
exp |
x | e x, where e is the base of the natural logarithm. | ||
floor |
x | The largest number not greater than x whose value is an exact integer. | ||
ln |
x | Natural logarithm of x. | x > 0 | |
log |
x | By default, the base 10 logarithm of x, but can be set to be the natural logarithm of x, or to be an illegal construct. | x > 0 | |
log |
x, y | The base x logarithm of y. | y > 0 | |
log10 |
x | Base 10 logarithm of x. | x > 0 | |
piecewise |
x1, y1, [x2, y2,] [...] [z] | A piecewise function: if (y1), x1. Otherwise, if (y2), x2, etc. Otherwise, z. | y1, y2, y3 [etc] must be boolean | |
pow , power |
x, y | x y. | ||
root |
b, x | The root base b of x. | ||
sec |
x | Secant of x. | ||
sech |
x | Hyperbolic secant of x. | ||
sqr |
x | x2. | ||
sqrt |
x | √x. | x > 0 | sqrt(x) ≥ 0 |
sin |
x | Sine of x. | ||
sinh |
x | Hyperbolic sine of x. | ||
tan |
x | Tangent of x. | x ≠ n*π/2, for odd integer n | |
tanh |
x | Hyperbolic tangent of x. | ||
and |
x, y, z... | Boolean and(x, y, z...): returns true if all of its arguments are true. Note that 'and' is an n-ary function, taking 0 or more arguments, and that and() returns 'true'. | All arguments must be boolean | |
not |
x | Boolean not(x) | x must be boolean | |
or |
x, y, z... | Boolean or(x, y, z...): returns true if at least one of its arguments is true. Note that 'or' is an n-ary function, taking 0 or more arguments, and that or() returns 'false'. | All arguments must be boolean | |
xor |
x, y, z... | Boolean xor(x, y, z...): returns true if an odd number of its arguments is true. Note that 'xor' is an n-ary function, taking 0 or more arguments, and that xor() returns 'false'. | All arguments must be boolean | |
eq |
x, y, z... | Boolean eq(x, y, z...): returns true if all arguments are equal. Note that 'eq' is an n-ary function, but must take 2 or more arguments. | ||
geq |
x, y, z... | Boolean geq(x, y, z...): returns true if each argument is greater than or equal to the argument following it. Note that 'geq' is an n-ary function, but must take 2 or more arguments. | ||
gt |
x, y, z... | Boolean gt(x, y, z...): returns true if each argument is greater than the argument following it. Note that 'gt' is an n-ary function, but must take 2 or more arguments. | ||
leq |
x, y, z... | Boolean leq(x, y, z...): returns true if each argument is less than or equal to the argument following it. Note that 'leq' is an n-ary function, but must take 2 or more arguments. | ||
lt |
x, y, z... | Boolean lt(x, y, z...): returns true if each argument is less than the argument following it. Note that 'lt' is an n-ary function, but must take 2 or more arguments. | ||
neq |
x, y | Boolean x != y: returns true unless x and y are equal. | ||
plus |
x, y, z... | x + y + z + ...: The sum of the arguments of the function. Note that 'plus' is an n-ary function taking 0 or more arguments, and that 'plus()' returns 0. | ||
times |
x, y, z... | x * y * z * ...: The product of the arguments of the function. Note that 'times' is an n-ary function taking 0 or more arguments, and that 'times()' returns 1. | ||
minus |
x, y | x - y. | ||
divide |
x, y | x / y. |
Note that the manner in which the 'L3' versions of the formula parser and formatter interpret the function "<code>log</code>" can be changed. To do so, callers should use the function libsbml.parseL3FormulaWithSettings() and pass it an appropriate L3ParserSettings object. By default, unlike the SBML Level 1 parser implemented by libsbml.parseFormula(), the string "<code>log</code>" is interpreted as the base 10 logarithm, and not as the natural logarithm. However, you can change the interpretation to be base-10 log, natural log, or as an error; since the name 'log' by itself is ambiguous, you require that the parser uses log10
or ln
instead, which are more clear. Please refer to libsbml.parseL3FormulaWithSettings().
In addition, the following symbols will be translated to their MathML equivalents, if no symbol with the same SId
identifier string exists in the Model object provided:
Name | Meaning | MathML |
---|---|---|
true |
The boolean value true |
<true/> |
false |
The boolean value false |
<false/> |
pi |
The mathematical constant pi | <pi/> |
avogadro |
The numerical value of Avogadro's constant, as defined in the SBML specification | <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/avogadro"> avogadro </csymbol/> |
time |
Simulation time as defined in SBML | <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol/> |
inf or infinity |
The mathematical constant "infinity" | <infinity/> |
nan or notanumber |
The mathematical concept "not a number" | <notanumber/> |
Note that whether the string "<code>avogadro</code>" is parsed as an AST node of type AST_NAME_AVOGADRO or AST_NAME is configurable; use the alternate version of this function, called libsbml.parseL3FormulaWithSettings(). This functionality is provided because SBML Level 2 models may not use AST_NAME_AVOGADRO AST nodes.
formula | the text-string formula expression to be parsed |
None
if an error occurred while parsing the formula. When None
is returned, an error is recorded internally; information about the error can be retrieved using libsbml.getLastParseL3Error().def libsbml.parseL3FormulaWithModel | ( | args | ) |
Python method signature(s):
parseL3FormulaWithModel(char * formula, Model model)ASTNode
Parses the given mathematical formula using specific a specific Model to resolve symbols, and returns an Abstract Syntax Tree (AST) representation of the result.
This is identical to libsbml.parseL3Formula(), except that this function uses the given model in the argument model
to check against identifiers that appear in the formula
.
For more details about the parser, please see the definition of the functionlibsbml.parseL3Formula().
formula | the mathematical formula expression to be parsed |
model | the Model object to use for checking identifiers |
None
if an error occurred while parsing the formula. When None
is returned, an error is recorded internally; information about the error can be retrieved using libsbml.getLastParseL3Error().def libsbml.parseL3FormulaWithSettings | ( | args | ) |
Python method signature(s):
parseL3FormulaWithSettings(char * formula, L3ParserSettings settings)ASTNode
Parses the given mathematical formula using specific parser settings and returns an Abstract Syntax Tree (AST) representation of the result.
This is identical to libsbml.parseL3Formula(), except that this function uses the parser settings given in the argument settings
. The settings override the default parsing behavior.
The parameter settings
allows callers to change the following parsing behaviors:
<ci> pi </ci>
instead of the construct <pi/>
. id
as the identifier of a unit of measurement associated with the number, or whether to treat the case as an error. For more details about the parser, please see the definition of L3ParserSettings and libsbml.parseL3Formula().
formula | the mathematical formula expression to be parsed |
settings | the settings to be used for this parser invocation |
None
if an error occurred while parsing the formula. When None
is returned, an error is recorded internally; information about the error can be retrieved using libsbml.getLastParseL3Error().def libsbml.parseLayoutAnnotation | ( | args | ) |
Python method signature(s):
parseLayoutAnnotation(XMLNode annotation, ListOfLayouts layouts)
takes an annotation that has been read into the model identifies the RDF elements and creates a List of Layouts from the annotation
def libsbml.parseLayoutId | ( | args | ) |
Python method signature(s):
parseLayoutId(SimpleSpeciesReference sr)XMLNode
Creates an XMLNode that represents the layoutId annotation of the species reference from the given SpeciesReference object.
def libsbml.parseLayouts | ( | args | ) |
def libsbml.parseSpeciesReferenceAnnotation | ( | args | ) |
Python method signature(s):
parseSpeciesReferenceAnnotation(XMLNode annotation, SimpleSpeciesReference sr)
takes an annotation that has been read into the species reference identifies the id elements and set the id of the species reference
def libsbml.QualExtension_getDefaultLevel | ( | ) |
Python method signature(s):
QualExtension_getDefaultLevel()long
Returns the default SBML Level this extension.
def libsbml.QualExtension_getDefaultPackageVersion | ( | ) |
Python method signature(s):
QualExtension_getDefaultPackageVersion()long
Returns the default SBML version this extension.
def libsbml.QualExtension_getDefaultVersion | ( | ) |
Python method signature(s):
QualExtension_getDefaultVersion()long
Returns the default SBML Version this extension.
def libsbml.QualExtension_getPackageName | ( | ) |
Python method signature(s):
QualExtension_getPackageName()string
Returns the package name of this extension.
def libsbml.QualExtension_getXmlnsL3V1V1 | ( | ) |
Python method signature(s):
QualExtension_getXmlnsL3V1V1()string
Returns URI of supported versions of this package.
def libsbml.RDFAnnotationParser_createAnnotation | ( | ) |
Python method signature(s):
RDFAnnotationParser_createAnnotation()XMLNode
Creates a blank annotation and returns its root XMLNode object.
This creates a completely empty SBML <annotation>
element. It is not attached to any SBML element. An example of how this might be used is illustrated in the following code fragment. In this example, suppose that content
is an XMLNode object previously created, containing MIRIAM-style annotations, and that sbmlObject
is an SBML object derived from SBase (e.g., a Model, or a Species, or a Compartment, etc.). Then:
RDF = RDFAnnotationParser.createRDFAnnotation() # Create RDF annotation XML structure. success = RDF.addChild(...content...) # Put some content into it. ... # Check 'success' return code value. annot = RDFAnnotationParser.createAnnotation() # Create <annotation> container. success = annot.addChild(RDF) # Put the RDF annotation into it. ... # Check 'success' return code value. success = sbmlObject.setAnnotation(annot) # Set object's annotation to what we built. ... # Check 'success' return code value.
The SBML specification contains more information about the format of annotations. We urge readers to consult Section 6 of the SBML Level 2 (Versions 2–4) and SBML Level 3 specification documents.
def libsbml.RDFAnnotationParser_createCVTerms | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_createCVTerms(SBase obj)XMLNode
Takes a list of CVTerm objects and creates a the RDF 'Description' element.
This essentially takes the given SBML object, reads out the CVTerm objects attached to it, creates an RDF 'Description' element to hold the terms, and adds each term with appropriate qualifiers.
obj | the SBML object to start from |
def libsbml.RDFAnnotationParser_createRDFAnnotation | ( | ) |
Python method signature(s):
RDFAnnotationParser_createRDFAnnotation()XMLNode
Creates a blank RDF element suitable for use in SBML annotations.
The annotation created by this method has namespace declarations for all the relevant XML namespaces used in RDF annotations and also has an empty RDF element. The result is the following XML:
<rdf:RDF xmlns:rdf='http://www.w3.org/1999/02/22-rdf-syntax-ns#' xmlns:dc='http://purl.org/dc/elements/1.1/' xmlns:dcterms='http://purl.org/dc/terms/' xmlns:vCard='http://www.w3.org/2001/vcard-rdf/3.0#' xmlns:bqbiol='http://biomodels.net/biology-qualifiers/' xmlns:bqmodel='http://biomodels.net/model-qualifiers/' > </rdf:RDF>
Note that this does not create the containing SBML <annotation>
element; the method RDFAnnotationParser.createAnnotation() is available for creating the container.
def libsbml.RDFAnnotationParser_deleteRDFAnnotation | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_deleteRDFAnnotation(XMLNode annotation)XMLNode
Deletes any SBML MIRIAM RDF annotation found in the given XMLNode tree and returns any remaining annotation content.
The name of the XMLNode given as parameter annotation
must be 'annotation', or else this method returns None
. The method will walk down the XML structure looking for elements that are in the RDF XML namespace, and remove them if they conform to the syntax of a History or CVTerm element.
annotation | the XMLNode tree within which the RDF annotation is to be found and deleted |
def libsbml.RDFAnnotationParser_deleteRDFCVTermAnnotation | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_deleteRDFCVTermAnnotation(XMLNode annotation)XMLNode
Deletes any SBML MIRIAM RDF 'CVTerm' annotation found in the given XMLNode tree and returns any remaining annotation content.
The name of the XMLNode given as parameter annotation
must be 'annotation', or else this method returns None
. The method will walk down the XML structure looking for elements that are in the RDF XML namespace, and remove any that conform to the syntax of a CVTerm element.
annotation | the XMLNode tree within which the RDF annotation is to be found and deleted |
def libsbml.RDFAnnotationParser_deleteRDFHistoryAnnotation | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_deleteRDFHistoryAnnotation(XMLNode annotation)XMLNode
Deletes any SBML MIRIAM RDF 'History' annotation found in the given XMLNode tree and returns any remaining annotation content.
The name of the XMLNode given as parameter annotation
must be 'annotation', or else this method returns None
. The method will walk down the XML structure looking for elements that are in the RDF XML namespace, and remove any that conform to the syntax of a History element.
annotation | the XMLNode tree within which the RDF annotation is to be found and deleted |
def libsbml.RDFAnnotationParser_parseCVTerms | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_parseCVTerms(SBase obj)XMLNode
Takes a list of CVTerm objects and creates a complete SBML annotation around it.
This essentially takes the given SBML object, reads out the CVTerm objects attached to it, calls RDFAnnotationParser.createRDFAnnotation() to create an RDF annotation to hold the terms, and finally calls RDFAnnotationParser.createAnnotation() to wrap the result as an SBML <annotation>
element.
obj | the SBML object to start from |
def libsbml.RDFAnnotationParser_parseModelHistory | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_parseModelHistory(SBase obj)XMLNode
Reads the model history and cvTerms stored in obj
and creates the XML structure for an SBML annotation representing that metadata if there is a model history stored in obj
.
obj | any SBase object |
None
is returned even if CVTerms are present.def libsbml.RDFAnnotationParser_parseOnlyModelHistory | ( | args | ) |
Python method signature(s):
RDFAnnotationParser_parseOnlyModelHistory(SBase obj)XMLNode
Reads the model history stored in obj
and creates the XML structure for an SBML annotation representing that history.
obj | any SBase object |
def libsbml.RDFAnnotationParser_parseRDFAnnotation | ( | args | ) |
Python method signature(s):
parseRDFAnnotation(XMLNode annotation, char * metaId=None, XMLInputStream stream=None)ModelHistory parseRDFAnnotation(XMLNode annotation, char * metaId=None)
ModelHistory parseRDFAnnotation(XMLNode annotation)
ModelHistory parseRDFAnnotation(XMLNode annotation, CVTermList CVTerms) parseRDFAnnotation(XMLNode annotation, CVTermList CVTerms, char * metaId=None, XMLInputStream stream=None) RDFAnnotationParser_parseRDFAnnotation(XMLNode annotation, CVTermList CVTerms, char * metaId=None)
This method has multiple variants that differ in the arguments they accept. Each is described separately below.
parseRDFAnnotation(XMLNodeannotation, List *CVTerms, string metaId = None, XMLInputStream stream = None)
Parses an annotation (given as an XMLNode tree) into a list of CVTerm objects.
This is used to take an annotation that has been read into an SBML model, identify the RDF elements within it, and create a list of corresponding CVTerm (controlled vocabulary term) objects.
annotation | XMLNode containing the annotation. |
CVTerms | list of CVTerm objects to be created. |
metaId | optional metaId, if set only the RDF annotation for this metaId will be returned. |
stream | optional XMLInputStream that facilitates error logging. |
parseRDFAnnotation(XMLNodeannotation, string metaId = None, XMLInputStream stream = None)
Parses an annotation into a ModelHistory class instance.
This is used to take an annotation that has been read into an SBML model, identify the RDF elements representing model history information, and create a list of corresponding CVTerm objects.
annotation | XMLNode containing the annotation. |
stream | optional XMLInputStream that facilitates error logging |
metaId | optional metaId, if set only the RDF annotation for this metaId will be returned. |
def libsbml.readMathMLFromString | ( | args | ) |
Python method signature(s):
readMathMLFromString(char * xml)ASTNode
Reads the MathML from the given XML string, constructs a corresponding abstract syntax tree, and returns a pointer to the root of the tree.
xml | a string containing a full MathML expression |
None
is returned if the given string is None
or invalid. def libsbml.readMathMLFromStringWithNamespaces | ( | args | ) |
Python method signature(s):
readMathMLFromStringWithNamespaces(char * xml, XMLNamespaces xmlns)ASTNode
Reads the MathML from the given XML string, constructs a corresponding abstract syntax tree, and returns a pointer to the root of the tree.
xml | a string containing a full MathML expression |
xmlns | a XMLNamespaces_t object containing namespaces that are considered active during the read e.g. an L3 package namespace |
None
is returned if the given string is None
or invalid. def libsbml.readSBML | ( | args | ) |
Python method signature(s):
readSBML(string filename)SBMLDocument
Reads an SBML document from a file.
This method is identical to readSBMLFromFile().
If the file named 'filename' does not exist or its content is not valid SBML, one or more errors will be logged with the SBMLDocument object returned by this method. Callers can use the methods on SBMLDocument such as SBMLDocument.getNumErrors() and SBMLDocument.getError() to get the errors. The object returned by SBMLDocument.getError() is an SBMLError object, and it has methods to get the error code, category, and severity level of the problem, as well as a textual description of the problem. The possible severity levels range from informational messages to fatal errors; see the documentation for SBMLError for more information.
If the file 'filename' could not be read, the file-reading error will appear first. The error code can provide a clue about what happened. For example, a file might be unreadable (either because it does not actually exist or because the user does not have the necessary access privileges to read it) or some sort of file operation error may have been reported by the underlying operating system. Callers can check for these situations using a program fragment such as the following:
reader = SBMLReader() doc = reader.readSBML(filename)
if doc.getNumErrors() > 0: if doc.getError(0).getErrorId() == libsbml.XMLFileUnreadable: # Handle case of unreadable file here. elif doc.getError(0).getErrorId() == libsbml.XMLFileOperationError: # Handle case of other file error here. else: # Handle other error cases here.
If the given filename ends with the suffix ".gz" (for example, "myfile.xml.gz"), the file is assumed to be compressed in gzip format and will be automatically decompressed upon reading. Similarly, if the given filename ends with ".zip" or ".bz2", the file is assumed to be compressed in zip or bzip2 format (respectively). Files whose names lack these suffixes will be read uncompressed. Note that if the file is in zip format but the archive contains more than one file, only the first file in the archive will be read and the rest ignored.
To read a gzip/zip file, libSBML needs to be configured and linked with the zlib library at compile time. It also needs to be linked with the bzip2 library to read files in bzip2 format. (Both of these are the default configurations for libSBML.) Errors about unreadable files will be logged if a compressed filename is given and libSBML was not linked with the corresponding required library.
Parameter 'filename is the name or full pathname of the file to be read.
Returns a pointer to the SBMLDocument created from the SBML content.
See also SBMLError.
Note:
LibSBML versions 2.x and later versions behave differently in error handling in several respects. One difference is how early some errors are caught and whether libSBML continues processing a file in the face of some early errors. In general, libSBML versions after 2.x stop parsing SBML inputs sooner than libSBML version 2.x in the face of XML errors, because the errors may invalidate any further SBML content. For example, a missing XML declaration at the beginning of the file was ignored by libSBML 2.x but in version 3.x and later, it will cause libSBML to stop parsing the rest of the input altogether. While this behavior may seem more severe and intolerant, it was necessary in order to provide uniform behavior regardless of which underlying XML parser (Expat, Xerces, libxml2) is being used by libSBML. The XML parsers themselves behave differently in their error reporting, and sometimes libSBML has to resort to the lowest common denominator.
def libsbml.readSBMLFromFile | ( | args | ) |
Python method signature(s):
readSBMLFromFile(char * filename)SBMLDocument
Reads an SBML document from the given file filename
.
If filename
does not exist, or it is not an SBML file, an error will be logged in the error log of the SBMLDocument object returned by this method. Calling programs can inspect this error log to determine the nature of the problem. Please refer to the definition of SBMLDocument_t for more information about the error reporting mechanism.
SBMLReader_t *sr;
SBMLDocument_t *d;
sr = SBMLReader_create();
d = SBMLReader_readSBML(reader, filename);
if (SBMLDocument_getNumErrors(d) > 0)
{
if (XMLError_getId(SBMLDocument_getError(d, 0)) == SBML_READ_ERROR_FILE_NOT_FOUND)
if (XMLError_getId(SBMLDocument_getError(d, 0)) == SBML_READ_ERROR_NOT_SBML)
}
If the filename ends with .gz, the file will be read as a gzip file. Similary, if the filename ends with .zip or .bz2, the file will be read as a zip or bzip2 file, respectively. Otherwise, the fill will be read as an uncompressed file. If the filename ends with .zip, only the first file in the archive will be read if the zip archive contains two or more files.
To read a gzip/zip file, underlying libSBML needs to be linked with zlib at compile time. Also, underlying libSBML needs to be linked with bzip2 to read a bzip2 file. File unreadable error will be logged if a compressed file name is given and underlying libSBML is not linked with the corresponding required library. SBMLReader_hasZlib() and SBMLReader_hasBzip2() can be used to check whether libSBML is linked with each library.
def libsbml.readSBMLFromString | ( | args | ) |
Python method signature(s):
readSBMLFromString(char * xml)SBMLDocument
Reads an SBML document from the given XML string xml
.
If the string does not begin with XML declaration,
<?xml version='1.0' encoding='UTF-8'?>
an XML declaration string will be prepended.
This method will report an error if the given string xml
is not SBML. The error will be logged in the error log of the SBMLDocument_t structure returned by this method. Calling programs can inspect this error log to determine the nature of the problem. Please refer to the definition of SBMLDocument for more information about the error reporting mechanism.
def libsbml.RenderExtension_getDefaultLevel | ( | ) |
Python method signature(s):
RenderExtension_getDefaultLevel()long
Returns the default SBML Level this extension.
def libsbml.RenderExtension_getDefaultPackageVersion | ( | ) |
Python method signature(s):
RenderExtension_getDefaultPackageVersion()long
Returns the default SBML version this extension.
def libsbml.RenderExtension_getDefaultVersion | ( | ) |
Python method signature(s):
RenderExtension_getDefaultVersion()long
Returns the default SBML Version this extension.
def libsbml.RenderExtension_getPackageName | ( | ) |
Python method signature(s):
RenderExtension_getPackageName()string
Returns the package name of this extension.
def libsbml.RenderExtension_getXmlnsL2 | ( | ) |
Python method signature(s):
RenderExtension_getXmlnsL2()string
def libsbml.RenderExtension_getXmlnsL3V1V1 | ( | ) |
Python method signature(s):
RenderExtension_getXmlnsL3V1V1()string
Returns URI of supported versions of this package.
def libsbml.representsBinaryFunction | ( | args | ) |
Python method signature(s):
representsBinaryFunction(int type, ASTBasePlugin plugin=None)bool representsBinaryFunction(int type)
bool
def libsbml.representsFunction | ( | args | ) |
Python method signature(s):
representsFunction(int type, ASTBasePlugin plugin=None)bool representsFunction(int type)
bool
def libsbml.representsFunctionRequiringAtLeastTwoArguments | ( | args | ) |
Python method signature(s):
representsFunctionRequiringAtLeastTwoArguments(int type)bool
def libsbml.representsNaryFunction | ( | args | ) |
Python method signature(s):
representsNaryFunction(int type, ASTBasePlugin plugin=None)bool representsNaryFunction(int type)
bool
def libsbml.representsNumber | ( | args | ) |
Python method signature(s):
representsNumber(int type)bool
def libsbml.representsQualifier | ( | args | ) |
Python method signature(s):
representsQualifier(int type, ASTBasePlugin plugin=None)bool representsQualifier(int type)
bool
def libsbml.representsUnaryFunction | ( | args | ) |
Python method signature(s):
representsUnaryFunction(int type, ASTBasePlugin plugin=None)bool representsUnaryFunction(int type)
bool
def libsbml.SBMLConverterRegistry_getInstance | ( | ) |
Python method signature(s):
SBMLConverterRegistry_getInstance()SBMLConverterRegistry
Returns the singleton instance for the converter registry.
Prior to using the registry, callers have to obtain a copy of the registry. This static method provides the means for doing that.
def libsbml.SBMLDocument_getDefaultLevel | ( | ) |
Python method signature(s):
SBMLDocument_getDefaultLevel()long
The default SBML Level of new SBMLDocument objects.
def libsbml.SBMLDocument_getDefaultVersion | ( | ) |
Python method signature(s):
SBMLDocument_getDefaultVersion()long
The default Version of new SBMLDocument objects.
def libsbml.SBMLExtensionRegistry_disablePackage | ( | args | ) |
Python method signature(s):
SBMLExtensionRegistry_disablePackage(string package)
Disables the package with the given URI / name.
def libsbml.SBMLExtensionRegistry_enablePackage | ( | args | ) |
Python method signature(s):
SBMLExtensionRegistry_enablePackage(string package)
Enables the package with the given URI / name.
def libsbml.SBMLExtensionRegistry_getInstance | ( | ) |
Python method signature(s):
SBMLExtensionRegistry_getInstance()SBMLExtensionRegistry
Returns an instance (singleton) of the SBMLExtensionRegistry class. This function needs to be invoked when manipulating the SBMLExtensionRegistry class.
def libsbml.SBMLExtensionRegistry_getNumRegisteredPackages | ( | ) |
Python method signature(s):
SBMLExtensionRegistry_getNumRegisteredPackages()long
Returns the number of registered packages.
def libsbml.SBMLExtensionRegistry_getRegisteredPackageName | ( | args | ) |
Python method signature(s):
SBMLExtensionRegistry_getRegisteredPackageName(long index)string
Returns the registered package name at the given index
index | zero based index of the package name to return |
def libsbml.SBMLExtensionRegistry_isPackageEnabled | ( | args | ) |
Python method signature(s):
SBMLExtensionRegistry_isPackageEnabled(string package)bool
If the given package
is enabled, returns True
; otherwise, returns False
.
def libsbml.SBMLNamespaces_freeSBMLNamespaces | ( | args | ) |
Python method signature(s):
SBMLNamespaces_freeSBMLNamespaces(List * supportedNS)
Frees the list of supported namespaces as generated by getSupportedNamespaces().
supportedNS | the list to be freed. |
def libsbml.SBMLNamespaces_getSBMLNamespaceURI | ( | args | ) |
Python method signature(s):
SBMLNamespaces_getSBMLNamespaceURI(long level, long version)string
Returns a string representing the SBML XML namespace for the given level
and version
of SBML.
level | the SBML level |
version | the SBML version |
def libsbml.SBMLNamespaces_getSupportedNamespaces | ( | ) |
Python method signature(s):
SBMLNamespaces_getSupportedNamespaces()List *
Returns a list of all supported SBMLNamespaces in this version of libsbml.
def libsbml.SBMLNamespaces_isSBMLNamespace | ( | args | ) |
Python method signature(s):
SBMLNamespaces_isSBMLNamespace(string uri)bool
Predicate returning True
if the given URL is one of SBML XML namespaces.
uri | the URI of namespace |
True
if the 'uri' is one of SBML namespaces, False
otherwise.def libsbml.SBMLReader_hasBzip2 | ( | ) |
Python method signature(s):
SBMLReader_hasBzip2()bool
Static method; returns True
if this copy of libSBML supports bzip2 format compression.
True
if libSBML is linked with the bzip2 libraries, False
otherwise.def libsbml.SBMLReader_hasZlib | ( | ) |
Python method signature(s):
SBMLReader_hasZlib()bool
Static method; returns True
if this copy of libSBML supports gzip and zip format compression.
True
if libSBML has been linked with the zlib library, False
otherwise.def libsbml.SBMLResolverRegistry_getInstance | ( | ) |
Python method signature(s):
SBMLResolverRegistry_getInstance()SBMLResolverRegistry
Returns the singleton instance for the resolver registry.
Prior to using the registry, callers have to obtain a copy of the registry. This static method provides the means for doing that.
def libsbml.SBMLTypeCode_toString | ( | args | ) |
Python method signature(s):
SBMLTypeCode_toString(int tc, char * pkgName)string *
This method takes an SBML type code and returns a string representing the code.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In the Python language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
def libsbml.SBMLWriter_hasBzip2 | ( | ) |
Python method signature(s):
SBMLWriter_hasBzip2()bool
Predicate returning True
if this copy of libSBML has been linked with the bzip2 library.
LibSBML supports reading and writing files compressed with either bzip2 or zip/gzip compression. The facility depends on libSBML having been compiled with the necessary support libraries. This method allows a calling program to inquire whether that is the case for the copy of libSBML it is using.
True
if libSBML is linked with bzip2, False
otherwise.def libsbml.SBMLWriter_hasZlib | ( | ) |
Python method signature(s):
SBMLWriter_hasZlib()bool
Predicate returning True
if this copy of libSBML has been linked with the zlib library.
LibSBML supports reading and writing files compressed with either bzip2 or zip/gzip compression. The facility depends on libSBML having been compiled with the necessary support libraries. This method allows a calling program to inquire whether that is the case for the copy of libSBML it is using.
True
if libSBML is linked with zlib, False
otherwise.def libsbml.SBO_checkTerm | ( | args | ) |
Python method signature(s):
checkTerm(string sboTerm)bool SBO_checkTerm(int sboTerm)
bool
This method has multiple variants that differ in the arguments they accept. Each is described separately below.
checkTerm(string sboTerm)
Checks the format of the given SBO identifier string.
True
if sboTerm is in the correct format (a zero-padded, seven digit string), False
otherwise.checkTerm(int sboTerm)
Checks the format of the given SBO identifier, given in the form of the integer portion alone.
True
if sboTerm is in the range (0000000–9999999), False
otherwise.def libsbml.SBO_intToString | ( | args | ) |
Python method signature(s):
SBO_intToString(int sboTerm)string
Returns the integer as a correctly formatted SBO identifier string.
def libsbml.SBO_isConservationLaw | ( | args | ) |
Python method signature(s):
SBO_isConservationLaw(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'conservation law', False
otherwise.def libsbml.SBO_isContinuousFramework | ( | args | ) |
Python method signature(s):
SBO_isContinuousFramework(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'continuous framework', False
otherwise.def libsbml.SBO_isDiscreteFramework | ( | args | ) |
Python method signature(s):
SBO_isDiscreteFramework(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'discrete framework', False
otherwise.def libsbml.SBO_isEntity | ( | args | ) |
Python method signature(s):
SBO_isEntity(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'entity', False
otherwise.def libsbml.SBO_isEvent | ( | args | ) |
Python method signature(s):
SBO_isEvent(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'event', False
otherwise.def libsbml.SBO_isFunctionalCompartment | ( | args | ) |
Python method signature(s):
SBO_isFunctionalCompartment(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'functional compartment', False
otherwise.def libsbml.SBO_isFunctionalEntity | ( | args | ) |
Python method signature(s):
SBO_isFunctionalEntity(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'functional entity', False
otherwise.def libsbml.SBO_isInteraction | ( | args | ) |
Python method signature(s):
SBO_isInteraction(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'interaction', False
otherwise.def libsbml.SBO_isKineticConstant | ( | args | ) |
Python method signature(s):
SBO_isKineticConstant(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'kinetic constant', False
otherwise.def libsbml.SBO_isLogicalFramework | ( | args | ) |
Python method signature(s):
SBO_isLogicalFramework(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'logical framework', False
otherwise.def libsbml.SBO_isMaterialEntity | ( | args | ) |
Python method signature(s):
SBO_isMaterialEntity(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'material entity', False
otherwise.def libsbml.SBO_isMathematicalExpression | ( | args | ) |
Python method signature(s):
SBO_isMathematicalExpression(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'mathematical expression', False
otherwise.def libsbml.SBO_isMetadataRepresentation | ( | args | ) |
Python method signature(s):
SBO_isMetadataRepresentation(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'metadata representation', False
otherwise.def libsbml.SBO_isModellingFramework | ( | args | ) |
Python method signature(s):
SBO_isModellingFramework(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'modeling framework', False
otherwise.def libsbml.SBO_isModifier | ( | args | ) |
Python method signature(s):
SBO_isModifier(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'modifier', False
otherwise.def libsbml.SBO_isObselete | ( | args | ) |
Python method signature(s):
SBO_isObselete(long term)bool
Predicate for checking whether the given term is obsolete.
True
if term
is-a SBO 'obsolete' term, False
otherwise.def libsbml.SBO_isOccurringEntityRepresentation | ( | args | ) |
Python method signature(s):
SBO_isOccurringEntityRepresentation(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'occurring entity representation', False
otherwise.def libsbml.SBO_isParticipant | ( | args | ) |
Python method signature(s):
SBO_isParticipant(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'participant', False
otherwise.def libsbml.SBO_isParticipantRole | ( | args | ) |
Python method signature(s):
SBO_isParticipantRole(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'participant role', False
otherwise.def libsbml.SBO_isPhysicalEntityRepresentation | ( | args | ) |
Python method signature(s):
SBO_isPhysicalEntityRepresentation(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'physical entity representation', False
otherwise.def libsbml.SBO_isPhysicalParticipant | ( | args | ) |
Python method signature(s):
SBO_isPhysicalParticipant(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'physical participant, False
otherwise.def libsbml.SBO_isProduct | ( | args | ) |
Python method signature(s):
SBO_isProduct(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'product', False
otherwise.def libsbml.SBO_isQuantitativeParameter | ( | args | ) |
Python method signature(s):
SBO_isQuantitativeParameter(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'quantiative parameter', False
otherwise.def libsbml.SBO_isRateLaw | ( | args | ) |
Python method signature(s):
SBO_isRateLaw(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'rate law', False
otherwise.def libsbml.SBO_isReactant | ( | args | ) |
Python method signature(s):
SBO_isReactant(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'reactant', False
otherwise.def libsbml.SBO_isSteadyStateExpression | ( | args | ) |
Python method signature(s):
SBO_isSteadyStateExpression(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'steady state expression', False
otherwise.def libsbml.SBO_isSystemsDescriptionParameter | ( | args | ) |
Python method signature(s):
SBO_isSystemsDescriptionParameter(long term)bool
Returns True
if the given term identifier comes from the stated branch of SBO.
True
if term
is-a SBO 'systems description parameter', False
otherwise.def libsbml.SBO_stringToInt | ( | args | ) |
Python method signature(s):
SBO_stringToInt(string sboTerm)int
Returns the string as a correctly formatted SBO integer portion.
-1
is returned.def libsbml.SyntaxChecker_hasExpectedXHTMLSyntax | ( | args | ) |
Python method signature(s):
hasExpectedXHTMLSyntax(XMLNode xhtml, SBMLNamespaces sbmlns=None)bool SyntaxChecker_hasExpectedXHTMLSyntax(XMLNode xhtml)
bool
Returns True
or False
depending on whether the given XMLNode object contains valid XHTML content.
The format of 'notes' elements conform to the definition of XHTML 1.0. However, the content cannot be entirely free-form; it must satisfy certain requirements defined in the SBML specifications for specific SBML Levels. To help verify the formatting of 'notes' content, libSBML provides the static utility method SyntaxChecker.hasExpectedXHTMLSyntax(); The method implements a verification process that lets callers check whether the content of a given XMLNode object conforms to the SBML requirements for 'notes' and 'message' structure. Developers are urged to consult the appropriate SBML specification document for the Level and Version of their model for more in-depth explanations of using 'notes' in SBML. The SBML Level 2 and 3 specifications have considerable detail about how 'notes' element content must be structured.
An aspect of XHTML validity is that the content is declared to be in the XML namespace for XHTML 1.0. There is more than one way in which this can be done in XML. In particular, a model might not contain the declaration within the 'notes' or 'message' subelement itself, but might instead place the declaration on an enclosing element and use an XML namespace prefix within the 'notes' element to refer to it. In other words, the following is valid:
<sbml xmlns='http://www.sbml.org/sbml/level2/version3' level='2' version='3' xmlns:xhtml='http://www.w3.org/1999/xhtml'> <model> <notes> <xhtml:body> <xhtml:center><xhtml:h2>A Simple Mitotic Oscillator</xhtml:h2></xhtml:center> <xhtml:p>A minimal cascade model for the mitotic oscillator.</xhtml:p> </xhtml:body> </notes> ... rest of model ... </sbml>
Contrast the above with the following, self-contained version, which places the XML namespace declaration within the <notes>
element itself:
<sbml xmlns='http://www.sbml.org/sbml/level2/version3' level='2' version='3'> <model> <notes> <html xmlns='http://www.w3.org/1999/xhtml'> <head> <title/> </head> <body> <center><h2>A Simple Mitotic Oscillator</h2></center> <p>A minimal cascade model for the mitotic oscillator.</p> </body> </html> </notes> ... rest of model ... </sbml>
Both of the above are valid XML. The purpose of the sbmlns
argument to this method is to allow callers to check the validity of 'notes' and 'message' subelements whose XML namespace declarations have been put elsewhere in the manner illustrated above. Callers can can pass in the SBMLNamespaces object of a higher-level model component if the XMLNode object does not itself have the XML namespace declaration for XHTML 1.0.
xhtml | the XMLNode to be checked for conformance. |
sbmlns | the SBMLNamespaces associated with the object. |
True
if the XMLNode content conforms, False
otherwise.def libsbml.SyntaxChecker_isValidSBMLSId | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidSBMLSId(string sid)bool
Returns true True
or False
depending on whether the argument string conforms to the syntax of SBML identifiers.
SId
in the SBML specifications. LibSBML does not provide an explicit SId
data type; it uses ordinary character strings, which is easier for applications to support. (LibSBML does, however, test for identifier validity at various times, such as when reading in models from files and data streams.)This method provides programs with the ability to test explicitly that the identifier strings they create conform to the SBML identifier syntax.
sid | string to be checked for conformance to SBML identifier syntax. |
True
if the string conforms to type SBML data type SId
, False
otherwise.SId
, which defines the permitted syntax of identifiers. We express the syntax using an extended form of BNF notation: letter ::= 'a'..'z','A'..'Z' digit ::= '0'..'9' idChar ::= letter | digit | '_' SId ::= ( letter | '_' ) idChar*The characters
(
and )
are used for grouping, the character *
'zero or more times', and the character |
indicates logical 'or'. The equality of SBML identifiers is determined by an exact character sequence match; i.e., comparisons must be performed in a case-sensitive manner. In addition, there are a few conditions for the uniqueness of identifiers in an SBML model. Please consult the SBML specifications for the exact details of the uniqueness requirements.def libsbml.SyntaxChecker_isValidUnitSId | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidUnitSId(string units)bool
Returns True
or False
depending on whether the argument string conforms to the syntax of SBML unit identifiers.
In SBML, the identifiers of units (of both the predefined units and user-defined units) must conform to a data type called UnitSId
in the SBML specifications. LibSBML does not provide an explicit UnitSId
data type; it uses ordinary character strings, which is easier for applications to support. LibSBML does, however, test for identifier validity at various times, such as when reading in models from files and data streams.
This method provides programs with the ability to test explicitly that the identifier strings they create conform to the SBML identifier syntax.
units | string to be checked for conformance to SBML unit identifier syntax. |
True
if the string conforms to type SBML data type UnitSId
, False
otherwise.UnitSId
, which defines the permitted syntax of identifiers.
We express the syntax using an extended form of BNF notation:
letter ::= 'a'..'z','A'..'Z'
digit ::= '0'..'9'
idChar ::= letter | digit | '_'
SId ::= ( letter | '_' ) idChar*
The characters (
and )
are used for grouping, the
character *
"zero or more times", and the character
|
indicates logical "or". The equality of SBML unit
identifiers is determined by an exact character sequence match; i.e.,
comparisons must be performed in a case-sensitive manner. In addition,
there are a few conditions for the uniqueness of unit identifiers in an
SBML model. Please consult the SBML specifications for the exact
formulations.
def libsbml.SyntaxChecker_isValidXMLanyURI | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidXMLanyURI(string uri)bool
Returns True
or False
depending on whether the uri
argument string conforms to the XML data type anyURI
.
Type anyURI is defined by XML Schema 1.0. It is a character string data type whose values are interpretable as URIs (Universal Resource Identifiers) as described by the W3C document RFC 3986. LibSBML does not provide an explicit XML anyURI
data type; it uses ordinary character strings, which is easier for applications to support. LibSBML does, however, test for anyURI validity at various times, such as when reading in models from files and data streams.
This method provides programs with the ability to test explicitly that the strings they create conform to the XML anyURI syntax.
uri | string to be checked for conformance to the syntax of anyURI. |
True
if the string is a syntactically-valid value for the XML type anyURI, False
otherwise.def libsbml.SyntaxChecker_isValidXMLID | ( | args | ) |
Python method signature(s):
SyntaxChecker_isValidXMLID(string id)bool
Returns True
or False
depending on whether the argument string conforms to the XML data type ID
.
ID
, the XML identifier type, which means each 'metaid' value must be globally unique within an SBML file. The latter point is important, because the uniqueness criterion applies across any attribute with type ID
anywhere in the file, not just the 'metaid' attribute used by SBML—something to be aware of if your application-specific XML content inside the 'annotation' subelement happens to use the XML ID
type. Although SBML itself specifies the use of XML ID
only for the 'metaid' attribute, SBML-compatible applications should be careful if they use XML ID
's in XML portions of a model that are not defined by SBML, such as in the application-specific content of the 'annotation' subelement. Finally, note that LibSBML does not provide an explicit XML ID
data type; it uses ordinary character strings, which is easier for applications to support.This method provides programs with the ability to test explicitly that the identifier strings they create conform to the SBML identifier syntax.
id | string to be checked for conformance to the syntax of XML ID. |
True
if the string is a syntactically-valid value for the XML type ID, False
otherwise.
NCNameChar ::= letter | digit | '.' | '-' | '_' | ':' | CombiningChar | Extender
ID ::= ( letter | '_' | ':' ) NCNameChar*
The characters (
and )
are used for grouping, the
character *
means "zero or more times", and the character
|
indicates logical "or". The production letter
consists of the basic upper and lower case alphabetic characters of the
Latin alphabet along with a large number of related characters defined by
Unicode 2.0; similarly, the production digit
consists of
the numerals 0..9
along with related Unicode 2.0
characters. The CombiningChar
production is a list of
characters that add such things as accents to the preceding character. (For
example, the Unicode character \#x030A
when combined with
a
produces \aa
.) The Extender
production is a list of characters that extend the shape of the preceding
character. Please consult the XML 1.0
specification for the complete definitions of letter
,
digit
, CombiningChar
, and Extender
.
def libsbml.Transformation2D_getIdentityMatrix2D | ( | ) |
Python method signature(s):
Transformation2D_getIdentityMatrix2D()float *
Returns a 2D identity matrix. The matrix contains 6 float values.
def libsbml.Transformation_getIdentityMatrix | ( | ) |
Python method signature(s):
Transformation_getIdentityMatrix()float *
Returns a 3D identity matrix. The matrix contains 12 float values.
def libsbml.Unit_areEquivalent | ( | args | ) |
Python method signature(s):
Unit_areEquivalent(Unit unit1, Unit unit2)bool
Predicate returning True
if Unit objects are equivalent.
Two Unit objects are considered to be equivalent either if (1) both have a 'kind' attribute value of dimensionless
, or (2) their 'kind', 'exponent' and (for SBML Level 2 Version 1) 'offset' attribute values are equal. (Contrast this to the method areIdentical(), which compares Unit objects with respect to all attributes, not just the 'kind' and 'exponent'.)
True
if the 'kind' and 'exponent' attributes of unit1 are identical to the kind and exponent attributes of unit2, False
otherwise.def libsbml.Unit_areIdentical | ( | args | ) |
Python method signature(s):
Unit_areIdentical(Unit unit1, Unit unit2)bool
Predicate returning True
if two Unit objects are identical.
Two Unit objects are considered to be identical if they match in all attributes. (Contrast this to the method areEquivalent(), which compares Unit objects only with respect to certain attributes.)
True
if all the attributes of unit1 are identical to the attributes of unit2, False
otherwise.def libsbml.Unit_convertToSI | ( | args | ) |
Python method signature(s):
Unit_convertToSI(Unit unit)UnitDefinition
Returns a UnitDefinition object containing the given unit
converted to the appropriate SI unit.
This method exists because some units can be expressed in terms of others when the same physical dimension is involved. For example, one hertz is identical to 1 sec-1, one litre is equivalent to 1 cubic decametre, and so on.
unit | the Unit object to convert to SI |
def libsbml.Unit_isBuiltIn | ( | args | ) |
Python method signature(s):
Unit_isBuiltIn(string name, long level)bool
Predicate to test whether a given string is the name of a predefined SBML unit.
name | a string to be tested against the predefined unit names |
level | the Level of SBML for which the determination should be made. This is necessary because there are a few small differences in allowed units between SBML Level 1 and Level 2. |
True
if name
is one of the five SBML predefined unit identifiers ('substance'
, 'volume'
, 'area'
, 'length'
or 'time'
), False
otherwise.'length'
and 'area'
were added in Level 2 Version 1.def libsbml.Unit_isUnitKind | ( | args | ) |
Python method signature(s):
Unit_isUnitKind(string name, long level, long version)bool
Predicate to test whether a given string is the name of a valid base unit in SBML (such as 'gram'
or 'mole'
).
This method exists because prior to SBML Level 2 Version 3, an enumeration called UnitKind
was defined by SBML. This enumeration was removed in SBML Level 2 Version 3 and its values were folded into the space of values of a type called UnitSId
. This method therefore has less significance in SBML Level 2 Version 3 and Level 2 Version 4, but remains for backward compatibility and support for reading models in older Versions of Level 2.
name | a string to be tested |
level | a long integer representing the SBML specification Level |
version | a long integer representing the SBML specification Version |
True
if name is a valid SBML UnitKind, False
otherwisedef libsbml.Unit_merge | ( | args | ) |
Python method signature(s):
Unit_merge(Unit unit1, Unit unit2)
Merges two Unit objects with the same 'kind' attribute value into a single Unit.
For example, the following,
<unit kind='metre' exponent='2'/> <unit kind='metre' exponent='1'/>
would be merged to become
<unit kind='metre' exponent='3'/>
unit1 | the first Unit object; the result of the operation is left as a new version of this unit, modified in-place. Not modified if the two units have different kinds. |
unit2 | the second Unit object to merge with the first |
def libsbml.Unit_removeScale | ( | args | ) |
Python method signature(s):
Unit_removeScale(Unit unit)int
Manipulates the attributes of the Unit to express the unit with the value of the scale attribute reduced to zero.
For example, 1 millimetre can be expressed as a Unit with kind='metre'
multiplier='1'
scale='-3'
exponent='1'
. It can also be expressed as a Unit with kind='metre'
multiplier='0.001'
scale='0'
exponent='1'
.
unit | the Unit object to manipulate. |
def libsbml.UnitDefinition_areEquivalent | ( | args | ) |
Python method signature(s):
UnitDefinition_areEquivalent(UnitDefinition ud1, UnitDefinition ud2)bool
Predicate returning True
if two UnitDefinition objects are equivalent.
For the purposes of performing this comparison, two UnitDefinition objects are considered equivalent when they contain equivalent list of Unit objects. Unit objects are in turn considered equivalent if they satisfy the predicate Unit.areEquivalent(). The predicate tests a subset of the objects's attributes.
ud1 | the first UnitDefinition object to compare |
ud2 | the second UnitDefinition object to compare |
True
if all the Unit objects in ud1 are equivalent to the Unit objects in ud2, False
otherwise.def libsbml.UnitDefinition_areIdentical | ( | args | ) |
Python method signature(s):
UnitDefinition_areIdentical(UnitDefinition ud1, UnitDefinition ud2)bool
Predicate returning True
if two UnitDefinition objects are identical.
For the purposes of performing this comparison, two UnitDefinition objects are considered identical when they contain identical lists of Unit objects. Pairs of Unit objects in the lists are in turn considered identical if they satisfy the predicate Unit.areIdentical(). The predicate compares every attribute of the Unit objects.
ud1 | the first UnitDefinition object to compare |
ud2 | the second UnitDefinition object to compare |
True
if all the Unit objects in ud1 are identical to the Unit objects of ud2, False
otherwise.def libsbml.UnitDefinition_combine | ( | args | ) |
Python method signature(s):
UnitDefinition_combine(UnitDefinition ud1, UnitDefinition ud2)UnitDefinition
Combines two UnitDefinition objects into a single UnitDefinition.
This takes UnitDefinition objects ud1
and ud2
, and creates a UnitDefinition object that expresses the product of the units of ud1
and ud2
.
ud1 | the first UnitDefinition object |
ud2 | the second UnitDefinition object |
def libsbml.UnitDefinition_convertToSI | ( | args | ) |
Python method signature(s):
UnitDefinition_convertToSI(UnitDefinition ud)UnitDefinition
Convert a given UnitDefinition into a new UnitDefinition object that uses SI units.
ud | the UnitDefinition object to convert to SI |
def libsbml.UnitDefinition_divide | ( | args | ) |
Python method signature(s):
UnitDefinition_divide(UnitDefinition ud1, UnitDefinition ud2)UnitDefinition
Combines two UnitDefinition objects into a single UnitDefinition as a division.
This takes UnitDefinition objects ud1
and ud2
, and creates a UnitDefinition object that expresses the division of the units of ud1
and ud2
.
ud1 | the first UnitDefinition object |
ud2 | the second UnitDefinition object |
def libsbml.UnitDefinition_printUnits | ( | args | ) |
Python method signature(s):
printUnits(UnitDefinition ud, bool compact=False)string UnitDefinition_printUnits(UnitDefinition ud)
string
Expresses the given definition in a plain-text form.
For example, UnitDefinition.printUnits() applied to
<unitDefinition> <listOfUnits> <unit kind='metre' exponent='1'/> <unit kind='second' exponent='-2'/> </listOfUnits> <unitDefinition>
will return the string 'metre (exponent = 1, multiplier = 1, scale = 0) second (exponent = -2, multiplier = 1, scale = 0)'
or, if the optional parameter compact
is given the value True
, the string '(1 metre)^1 (1 second)^-2'
. This method may be useful for printing unit information to human users, or in debugging software, or other situations.
ud | the UnitDefinition object |
compact | boolean indicating whether the compact form should be used (defaults to false) |
ud
.def libsbml.UnitDefinition_reorder | ( | args | ) |
Python method signature(s):
UnitDefinition_reorder(UnitDefinition ud)
Alphabetically orders the Unit objects within the ListOfUnits of a UnitDefinition.
ud | the UnitDefinition object whose units are to be reordered. |
def libsbml.UnitDefinition_simplify | ( | args | ) |
Python method signature(s):
UnitDefinition_simplify(UnitDefinition ud)
Simplifies the UnitDefinition such that any given kind of Unit object occurs only once in the ListOfUnits.
For example, the following definition,
<unitDefinition> <listOfUnits> <unit kind='metre' exponent='1'/> <unit kind='metre' exponent='2'/> </listOfUnits> <unitDefinition>
will be simplified to
<unitDefinition> <listOfUnits> <unit kind='metre' exponent='3'/> </listOfUnits> <unitDefinition>
ud | the UnitDefinition object to be simplified. |
def libsbml.UnitKind_equals | ( | args | ) |
Python method signature(s):
UnitKind_equals(long uk1, long uk2)int
Tests for logical equality between two given UNIT_KIND_
code values.
This function behaves exactly like C's ==
operator, except for the following two cases:
In the two cases above, C equality comparison would yield False
(because each of the above is a distinct enumeration value), but this function returns True
.
uk1 | a UNIT_KIND_ value |
uk2 | a second UNIT_KIND_ value to compare to uk1 |
True
) if uk1
is logically equivalent to uk2
, zero (for False
) otherwise.def libsbml.UnitKind_forName | ( | args | ) |
Python method signature(s):
UnitKind_forName(char * name)long
Converts a text string naming a kind of unit to its corresponding libSBML UNIT_KIND_
constant/enumeration value.
name | a string, the name of a predefined base unit in SBML |
UNIT_KIND_
codes defined in class libsbml, corresponding to the string name
(determined in a case-insensitive manner).def libsbml.UnitKind_isValidUnitKindString | ( | args | ) |
Python method signature(s):
UnitKind_isValidUnitKindString(char * str, long level, long version)int
Predicate for testing whether a given string corresponds to a predefined libSBML unit code.
str | a text string naming a base unit defined by SBML |
level | the Level of SBML |
version | the Version within the Level of SBML |
True
) if string is the name of a valid UNIT_KIND_
value, zero (for False
) otherwise.def libsbml.UnitKind_toString | ( | args | ) |
Python method signature(s):
UnitKind_toString(long uk)string *
Converts a unit code to a text string equivalent.
uka | value from the set of UNIT_KIND_ codes defined in the class libsbml |
def libsbml.writeMathMLToString | ( | args | ) |
Python method signature(s):
writeMathMLToString(ASTNode node)string *
Writes the given long (and its children) to a string as MathML, and returns the string.
node | the root of an AST to write out to the stream. |
None
is returned if the given argument is None
. def libsbml.writeSBML | ( | args | ) |
Python method signature(s):
writeSBML(SBMLDocument d, char * filename)int
Writes the given SBML document d
to the file named by filename
. This convenience function is functionally equivalent to:
SBMLWriter_writeSBML(SBMLWriter_create(), d, filename);
If the given filename ends with the suffix".gz"
(for example, "myfile.xml.gz"
), libSBML assumes the
caller wants the file to be written compressed in gzip format.
Similarly, if the given filename ends with ".zip"
or
".bz2"
, libSBML assumes the caller wants the file to
be compressed in zip or bzip2 format (respectively).
Files whose names lack these suffixes will be written uncompressed.
Special considerations for the zip format: If the given filename
ends with ".zip"
, the file placed in the zip archive
will have the suffix ".xml"
or
".sbml"
. For example, the file in the zip archive
will be named "test.xml"
if the given filename is
"test.xml.zip"
or "test.zip"
.
Similarly, the filename in the archive will be
"test.sbml"
if the given filename is
"test.sbml.zip"
.
d | the SBMLDocument object to be written out in XML format |
filename | a string giving the path to a file where the XML content is to be written. |
1
on success and 0
(zero) if filename
could not be written. Some possible reasons for failure include (a) being unable to open the file, and (b) using a filename that indicates a compressed SBML file (i.e., a filename ending in ".zip"
or similar) when the compression functionality has not been enabled in the underlying copy of libSBML.def libsbml.writeSBMLToFile | ( | args | ) |
Python method signature(s):
writeSBMLToFile(SBMLDocument d, char * filename)int
Writes the given SBML document d
to the file filename
. This convenience function is functionally equivalent to:
SBMLWriter_writeSBMLToFile(SBMLWriter_create(), d, filename);
but that does not require the caller to create an SBMLWriter object first.
If the given filename ends with the suffix".gz"
(for example, "myfile.xml.gz"
), libSBML assumes the
caller wants the file to be written compressed in gzip format.
Similarly, if the given filename ends with ".zip"
or
".bz2"
, libSBML assumes the caller wants the file to
be compressed in zip or bzip2 format (respectively).
Files whose names lack these suffixes will be written uncompressed.
Special considerations for the zip format: If the given filename
ends with ".zip"
, the file placed in the zip archive
will have the suffix ".xml"
or
".sbml"
. For example, the file in the zip archive
will be named "test.xml"
if the given filename is
"test.xml.zip"
or "test.zip"
.
Similarly, the filename in the archive will be
"test.sbml"
if the given filename is
"test.sbml.zip"
.
d | an SBMLDocument object to be written out in XML format |
filename | a string giving the path to a file where the XML content is to be written. |
1
on success and 0
(zero) if filename
could not be written. Some possible reasons for failure include (a) being unable to open the file, and (b) using a filename that indicates a compressed SBML file (i.e., a filename ending in ".zip"
or similar) when the compression functionality has not been enabled in the underlying copy of libSBML.def libsbml.writeSBMLToString | ( | args | ) |
Python method signature(s):
writeSBMLToString(SBMLDocument d)string *
Writes the given SBML document d
to an in-memory string and returns a pointer to it. The string is owned by the caller and should be freed (with free()) when no longer needed. This convenience function is functionally equivalent to:
SBMLWriter_writeSBMLToString(SBMLWriter_create(), d);
but does not require the caller to create an SBMLWriter object first.
d | an SBMLDocument object to be written out in XML format |
None
if one of the underlying parser components fail. def libsbml.XMLError_getStandardMessage | ( | args | ) |
Python method signature(s):
XMLError_getStandardMessage(int code)string
Returns a copy of the message string associated with the given predefined XMLError code.
code | the error code whose message is sought; it must be a predefined value from the set of predefined error identifiers. |
def libsbml.XMLNode_convertStringToXMLNode | ( | args | ) |
Python method signature(s):
convertStringToXMLNode(string xmlstr, XMLNamespaces xmlns=None)XMLNode XMLNode_convertStringToXMLNode(string xmlstr)
XMLNode
Returns an XMLNode which is derived from a string containing XML content.
The XML namespace must be defined using argument xmlns
if the corresponding XML namespace attribute is not part of the string of the first argument.
xmlstr | string to be converted to a XML node. |
xmlns | XMLNamespaces the namespaces to set (default value is None ). |
<html>
, <body>
, <annotation>
, or <notes>
. In the dummy root node, each top-level element in the given XML string is contained as a child XMLNode. XMLToken.isEOF() can be used to identify if the returned XMLNode object is a dummy node.xmlstr
. If the conversion failed, this method returns None
.def libsbml.XMLNode_convertXMLNodeToString | ( | args | ) |
libsbml.AllowedAttributesOnAlgRule = _libsbml.AllowedAttributesOnAlgRule |
libsbml.AllowedAttributesOnAssignRule = _libsbml.AllowedAttributesOnAssignRule |
libsbml.AllowedAttributesOnCompartment = _libsbml.AllowedAttributesOnCompartment |
libsbml.AllowedAttributesOnConstraint = _libsbml.AllowedAttributesOnConstraint |
libsbml.AllowedAttributesOnDelay = _libsbml.AllowedAttributesOnDelay |
libsbml.AllowedAttributesOnEvent = _libsbml.AllowedAttributesOnEvent |
libsbml.AllowedAttributesOnEventAssignment = _libsbml.AllowedAttributesOnEventAssignment |
libsbml.AllowedAttributesOnFunc = _libsbml.AllowedAttributesOnFunc |
libsbml.AllowedAttributesOnInitialAssign = _libsbml.AllowedAttributesOnInitialAssign |
libsbml.AllowedAttributesOnKineticLaw = _libsbml.AllowedAttributesOnKineticLaw |
libsbml.AllowedAttributesOnListOfComps = _libsbml.AllowedAttributesOnListOfComps |
libsbml.AllowedAttributesOnListOfConstraints = _libsbml.AllowedAttributesOnListOfConstraints |
libsbml.AllowedAttributesOnListOfEventAssign = _libsbml.AllowedAttributesOnListOfEventAssign |
libsbml.AllowedAttributesOnListOfEvents = _libsbml.AllowedAttributesOnListOfEvents |
libsbml.AllowedAttributesOnListOfFuncs = _libsbml.AllowedAttributesOnListOfFuncs |
libsbml.AllowedAttributesOnListOfInitAssign = _libsbml.AllowedAttributesOnListOfInitAssign |
libsbml.AllowedAttributesOnListOfLocalParam = _libsbml.AllowedAttributesOnListOfLocalParam |
libsbml.AllowedAttributesOnListOfMods = _libsbml.AllowedAttributesOnListOfMods |
libsbml.AllowedAttributesOnListOfParams = _libsbml.AllowedAttributesOnListOfParams |
libsbml.AllowedAttributesOnListOfReactions = _libsbml.AllowedAttributesOnListOfReactions |
libsbml.AllowedAttributesOnListOfRules = _libsbml.AllowedAttributesOnListOfRules |
libsbml.AllowedAttributesOnListOfSpecies = _libsbml.AllowedAttributesOnListOfSpecies |
libsbml.AllowedAttributesOnListOfSpeciesRef = _libsbml.AllowedAttributesOnListOfSpeciesRef |
libsbml.AllowedAttributesOnListOfUnitDefs = _libsbml.AllowedAttributesOnListOfUnitDefs |
libsbml.AllowedAttributesOnListOfUnits = _libsbml.AllowedAttributesOnListOfUnits |
libsbml.AllowedAttributesOnLocalParameter = _libsbml.AllowedAttributesOnLocalParameter |
libsbml.AllowedAttributesOnModel = _libsbml.AllowedAttributesOnModel |
libsbml.AllowedAttributesOnModifier = _libsbml.AllowedAttributesOnModifier |
libsbml.AllowedAttributesOnParameter = _libsbml.AllowedAttributesOnParameter |
libsbml.AllowedAttributesOnPriority = _libsbml.AllowedAttributesOnPriority |
libsbml.AllowedAttributesOnRateRule = _libsbml.AllowedAttributesOnRateRule |
libsbml.AllowedAttributesOnReaction = _libsbml.AllowedAttributesOnReaction |
libsbml.AllowedAttributesOnSBML = _libsbml.AllowedAttributesOnSBML |
libsbml.AllowedAttributesOnSpecies = _libsbml.AllowedAttributesOnSpecies |
libsbml.AllowedAttributesOnSpeciesReference = _libsbml.AllowedAttributesOnSpeciesReference |
libsbml.AllowedAttributesOnTrigger = _libsbml.AllowedAttributesOnTrigger |
libsbml.AllowedAttributesOnUnit = _libsbml.AllowedAttributesOnUnit |
libsbml.AllowedAttributesOnUnitDefinition = _libsbml.AllowedAttributesOnUnitDefinition |
libsbml.AND_ASSOCIATION = _libsbml.AND_ASSOCIATION |
fbc One of the possible Association types.
The Association class is not part of the official SBML Level 3 Flux Balance Constraints specification, but is instead a proposed future development of the package. If adopted, it would be a child of a GeneAssociation that would describe a single 'and' or 'or' relationship between two or more genes or other associations.
The present code is one of the possible Association types for this proposed SBML Level 3 Flux Balance Constraints (“fbc”) package future development.
libsbml.AnnotationNotElement = _libsbml.AnnotationNotElement |
libsbml.AnnotationNotesNotAllowedLevel1 = _libsbml.AnnotationNotesNotAllowedLevel1 |
libsbml.ApplyCiMustBeModelComponent = _libsbml.ApplyCiMustBeModelComponent |
libsbml.ApplyCiMustBeUserFunction = _libsbml.ApplyCiMustBeUserFunction |
libsbml.ArgsToEqNeedSameType = _libsbml.ArgsToEqNeedSameType |
libsbml.AssignmentToConstantEntity = _libsbml.AssignmentToConstantEntity |
libsbml.AssignRuleCompartmentMismatch = _libsbml.AssignRuleCompartmentMismatch |
libsbml.AssignRuleParameterMismatch = _libsbml.AssignRuleParameterMismatch |
libsbml.AssignRuleSpeciesMismatch = _libsbml.AssignRuleSpeciesMismatch |
libsbml.AssignRuleStoichiometryMismatch = _libsbml.AssignRuleStoichiometryMismatch |
libsbml.AST_CONSTANT_E = _libsbml.AST_CONSTANT_E |
libsbml.AST_CONSTANT_FALSE = _libsbml.AST_CONSTANT_FALSE |
libsbml.AST_CONSTANT_PI = _libsbml.AST_CONSTANT_PI |
libsbml.AST_CONSTANT_TRUE = _libsbml.AST_CONSTANT_TRUE |
libsbml.AST_CONSTRUCTOR_OTHERWISE = _libsbml.AST_CONSTRUCTOR_OTHERWISE |
libsbml.AST_CONSTRUCTOR_PIECE = _libsbml.AST_CONSTRUCTOR_PIECE |
libsbml.AST_DIVIDE = _libsbml.AST_DIVIDE |
libsbml.AST_FUNCTION = _libsbml.AST_FUNCTION |
libsbml.AST_FUNCTION_ABS = _libsbml.AST_FUNCTION_ABS |
libsbml.AST_FUNCTION_ARCCOS = _libsbml.AST_FUNCTION_ARCCOS |
libsbml.AST_FUNCTION_ARCCOSH = _libsbml.AST_FUNCTION_ARCCOSH |
libsbml.AST_FUNCTION_ARCCOT = _libsbml.AST_FUNCTION_ARCCOT |
libsbml.AST_FUNCTION_ARCCOTH = _libsbml.AST_FUNCTION_ARCCOTH |
libsbml.AST_FUNCTION_ARCCSC = _libsbml.AST_FUNCTION_ARCCSC |
libsbml.AST_FUNCTION_ARCCSCH = _libsbml.AST_FUNCTION_ARCCSCH |
libsbml.AST_FUNCTION_ARCSEC = _libsbml.AST_FUNCTION_ARCSEC |
libsbml.AST_FUNCTION_ARCSECH = _libsbml.AST_FUNCTION_ARCSECH |
libsbml.AST_FUNCTION_ARCSIN = _libsbml.AST_FUNCTION_ARCSIN |
libsbml.AST_FUNCTION_ARCSINH = _libsbml.AST_FUNCTION_ARCSINH |
libsbml.AST_FUNCTION_ARCTAN = _libsbml.AST_FUNCTION_ARCTAN |
libsbml.AST_FUNCTION_ARCTANH = _libsbml.AST_FUNCTION_ARCTANH |
libsbml.AST_FUNCTION_CEILING = _libsbml.AST_FUNCTION_CEILING |
libsbml.AST_FUNCTION_COS = _libsbml.AST_FUNCTION_COS |
libsbml.AST_FUNCTION_COSH = _libsbml.AST_FUNCTION_COSH |
libsbml.AST_FUNCTION_COT = _libsbml.AST_FUNCTION_COT |
libsbml.AST_FUNCTION_COTH = _libsbml.AST_FUNCTION_COTH |
libsbml.AST_FUNCTION_CSC = _libsbml.AST_FUNCTION_CSC |
libsbml.AST_FUNCTION_CSCH = _libsbml.AST_FUNCTION_CSCH |
libsbml.AST_FUNCTION_DELAY = _libsbml.AST_FUNCTION_DELAY |
libsbml.AST_FUNCTION_EXP = _libsbml.AST_FUNCTION_EXP |
libsbml.AST_FUNCTION_FACTORIAL = _libsbml.AST_FUNCTION_FACTORIAL |
libsbml.AST_FUNCTION_FLOOR = _libsbml.AST_FUNCTION_FLOOR |
libsbml.AST_FUNCTION_LN = _libsbml.AST_FUNCTION_LN |
libsbml.AST_FUNCTION_LOG = _libsbml.AST_FUNCTION_LOG |
libsbml.AST_FUNCTION_PIECEWISE = _libsbml.AST_FUNCTION_PIECEWISE |
libsbml.AST_FUNCTION_POWER = _libsbml.AST_FUNCTION_POWER |
libsbml.AST_FUNCTION_ROOT = _libsbml.AST_FUNCTION_ROOT |
libsbml.AST_FUNCTION_SEC = _libsbml.AST_FUNCTION_SEC |
libsbml.AST_FUNCTION_SECH = _libsbml.AST_FUNCTION_SECH |
libsbml.AST_FUNCTION_SIN = _libsbml.AST_FUNCTION_SIN |
libsbml.AST_FUNCTION_SINH = _libsbml.AST_FUNCTION_SINH |
libsbml.AST_FUNCTION_TAN = _libsbml.AST_FUNCTION_TAN |
libsbml.AST_FUNCTION_TANH = _libsbml.AST_FUNCTION_TANH |
libsbml.AST_INTEGER = _libsbml.AST_INTEGER |
libsbml.AST_LAMBDA = _libsbml.AST_LAMBDA |
libsbml.AST_LOGICAL_AND = _libsbml.AST_LOGICAL_AND |
libsbml.AST_LOGICAL_NOT = _libsbml.AST_LOGICAL_NOT |
libsbml.AST_LOGICAL_OR = _libsbml.AST_LOGICAL_OR |
libsbml.AST_LOGICAL_XOR = _libsbml.AST_LOGICAL_XOR |
libsbml.AST_MINUS = _libsbml.AST_MINUS |
libsbml.AST_NAME = _libsbml.AST_NAME |
libsbml.AST_NAME_AVOGADRO = _libsbml.AST_NAME_AVOGADRO |
libsbml.AST_NAME_TIME = _libsbml.AST_NAME_TIME |
libsbml.AST_ORIGINATES_IN_PACKAGE = _libsbml.AST_ORIGINATES_IN_PACKAGE |
This node uses math that is only available in an SBML Level 3 package.
libsbml.AST_PLUS = _libsbml.AST_PLUS |
libsbml.AST_POWER = _libsbml.AST_POWER |
libsbml.AST_QUALIFIER_BVAR = _libsbml.AST_QUALIFIER_BVAR |
libsbml.AST_QUALIFIER_DEGREE = _libsbml.AST_QUALIFIER_DEGREE |
libsbml.AST_QUALIFIER_LOGBASE = _libsbml.AST_QUALIFIER_LOGBASE |
libsbml.AST_RATIONAL = _libsbml.AST_RATIONAL |
libsbml.AST_REAL = _libsbml.AST_REAL |
libsbml.AST_REAL_E = _libsbml.AST_REAL_E |
libsbml.AST_RELATIONAL_EQ = _libsbml.AST_RELATIONAL_EQ |
libsbml.AST_RELATIONAL_GEQ = _libsbml.AST_RELATIONAL_GEQ |
libsbml.AST_RELATIONAL_GT = _libsbml.AST_RELATIONAL_GT |
libsbml.AST_RELATIONAL_LEQ = _libsbml.AST_RELATIONAL_LEQ |
libsbml.AST_RELATIONAL_LT = _libsbml.AST_RELATIONAL_LT |
libsbml.AST_RELATIONAL_NEQ = _libsbml.AST_RELATIONAL_NEQ |
libsbml.AST_SEMANTICS = _libsbml.AST_SEMANTICS |
libsbml.AST_TIMES = _libsbml.AST_TIMES |
libsbml.AST_UNKNOWN = _libsbml.AST_UNKNOWN |
One of the possible SBML Rule object types.
libsbml.AvogadroNotSupported = _libsbml.AvogadroNotSupported |
libsbml.BadCsymbolDefinitionURLValue = _libsbml.BadCsymbolDefinitionURLValue |
libsbml.BadlyFormedXML = _libsbml.BadlyFormedXML |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadMathML = _libsbml.BadMathML |
libsbml.BadMathMLNodeType = _libsbml.BadMathMLNodeType |
libsbml.BadProcessingInstruction = _libsbml.BadProcessingInstruction |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLAttribute = _libsbml.BadXMLAttribute |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLAttributeValue = _libsbml.BadXMLAttributeValue |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLComment = _libsbml.BadXMLComment |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLDecl = _libsbml.BadXMLDecl |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLDeclLocation = _libsbml.BadXMLDeclLocation |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLDOCTYPE = _libsbml.BadXMLDOCTYPE |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLDocumentStructure = _libsbml.BadXMLDocumentStructure |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLIDRef = _libsbml.BadXMLIDRef |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLIDValue = _libsbml.BadXMLIDValue |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLPrefix = _libsbml.BadXMLPrefix |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BadXMLPrefixValue = _libsbml.BadXMLPrefixValue |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.BIOLOGICAL_QUALIFIER = _libsbml.BIOLOGICAL_QUALIFIER |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BooleanOpsNeedBooleanArgs = _libsbml.BooleanOpsNeedBooleanArgs |
libsbml.BothAmountAndConcentrationSet = _libsbml.BothAmountAndConcentrationSet |
libsbml.BothStoichiometryAndMath = _libsbml.BothStoichiometryAndMath |
libsbml.BQB_ENCODES = _libsbml.BQB_ENCODES |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_HAS_PART = _libsbml.BQB_HAS_PART |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_HAS_PROPERTY = _libsbml.BQB_HAS_PROPERTY |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_HAS_VERSION = _libsbml.BQB_HAS_VERSION |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS = _libsbml.BQB_IS |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS_DESCRIBED_BY = _libsbml.BQB_IS_DESCRIBED_BY |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS_ENCODED_BY = _libsbml.BQB_IS_ENCODED_BY |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS_HOMOLOG_TO = _libsbml.BQB_IS_HOMOLOG_TO |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS_PART_OF = _libsbml.BQB_IS_PART_OF |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS_PROPERTY_OF = _libsbml.BQB_IS_PROPERTY_OF |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_IS_VERSION_OF = _libsbml.BQB_IS_VERSION_OF |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_OCCURS_IN = _libsbml.BQB_OCCURS_IN |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQB_UNKNOWN = _libsbml.BQB_UNKNOWN |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQM_IS = _libsbml.BQM_IS |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQM_IS_DERIVED_FROM = _libsbml.BQM_IS_DERIVED_FROM |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQM_IS_DESCRIBED_BY = _libsbml.BQM_IS_DESCRIBED_BY |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.BQM_UNKNOWN = _libsbml.BQM_UNKNOWN |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.CannotConvertToL1V1 = _libsbml.CannotConvertToL1V1 |
libsbml.CelsiusNoLongerValid = _libsbml.CelsiusNoLongerValid |
libsbml.CircularRuleDependency = _libsbml.CircularRuleDependency |
libsbml.CNV_TYPE_BOOL = _libsbml.CNV_TYPE_BOOL |
One of the possible ConversionOption data type indicators.
Indicates the value type is a Boolean.
libsbml.CNV_TYPE_DOUBLE = _libsbml.CNV_TYPE_DOUBLE |
One of the possible ConversionOption data type indicators.
Indicates the value type is a float-sized float.
libsbml.CNV_TYPE_INT = _libsbml.CNV_TYPE_INT |
One of the possible ConversionOption data type indicators.
Indicates the value type is an integer.
libsbml.CNV_TYPE_SINGLE = _libsbml.CNV_TYPE_SINGLE |
One of the possible ConversionOption data type indicators.
Indicates the value type is a float.
libsbml.CNV_TYPE_STRING = _libsbml.CNV_TYPE_STRING |
One of the possible ConversionOption data type indicators.
Indicates the value type is a string.
libsbml.CompartmentNotOnL1Reaction = _libsbml.CompartmentNotOnL1Reaction |
libsbml.CompartmentOnReaction = _libsbml.CompartmentOnReaction |
libsbml.CompartmentShouldHaveSize = _libsbml.CompartmentShouldHaveSize |
libsbml.CompartmentTypeNotValidAttribute = _libsbml.CompartmentTypeNotValidAttribute |
libsbml.CompartmentTypeNotValidComponent = _libsbml.CompartmentTypeNotValidComponent |
libsbml.CompAttributeRequiredMissing = _libsbml.CompAttributeRequiredMissing |
libsbml.CompAttributeRequiredMustBeBoolean = _libsbml.CompAttributeRequiredMustBeBoolean |
libsbml.CompAttributeRequiredMustBeTrue = _libsbml.CompAttributeRequiredMustBeTrue |
libsbml.CompCircularExternalModelReference = _libsbml.CompCircularExternalModelReference |
libsbml.CompDeletedReplacement = _libsbml.CompDeletedReplacement |
libsbml.CompDeletionAllowedAttributes = _libsbml.CompDeletionAllowedAttributes |
libsbml.CompDeletionMustReferenceObject = _libsbml.CompDeletionMustReferenceObject |
libsbml.CompDeletionMustReferOnlyOneObject = _libsbml.CompDeletionMustReferOnlyOneObject |
libsbml.CompDeprecatedDeleteFunction = _libsbml.CompDeprecatedDeleteFunction |
libsbml.CompDeprecatedReplaceFunction = _libsbml.CompDeprecatedReplaceFunction |
libsbml.CompDeprecatedSBaseRefSpelling = _libsbml.CompDeprecatedSBaseRefSpelling |
libsbml.CompDuplicateComponentId = _libsbml.CompDuplicateComponentId |
libsbml.CompElementNotInNs = _libsbml.CompElementNotInNs |
libsbml.CompEmptyLOModelDefs = _libsbml.CompEmptyLOModelDefs |
libsbml.CompEmptyLOReplacedElements = _libsbml.CompEmptyLOReplacedElements |
libsbml.CompExtentConversionMustBeParameter = _libsbml.CompExtentConversionMustBeParameter |
libsbml.CompExtModDefAllowedAttributes = _libsbml.CompExtModDefAllowedAttributes |
libsbml.CompExtModDefAllowedCoreAttributes = _libsbml.CompExtModDefAllowedCoreAttributes |
libsbml.CompExtModDefAllowedElements = _libsbml.CompExtModDefAllowedElements |
libsbml.CompExtModDefBad = _libsbml.CompExtModDefBad |
libsbml.CompExtModMd5DoesNotMatch = _libsbml.CompExtModMd5DoesNotMatch |
libsbml.CompFlatModelNotValid = _libsbml.CompFlatModelNotValid |
libsbml.CompFlatteningNotImplementedNotReqd = _libsbml.CompFlatteningNotImplementedNotReqd |
libsbml.CompFlatteningNotImplementedReqd = _libsbml.CompFlatteningNotImplementedReqd |
libsbml.CompFlatteningNotRecognisedNotReqd = _libsbml.CompFlatteningNotRecognisedNotReqd |
libsbml.CompFlatteningNotRecognisedReqd = _libsbml.CompFlatteningNotRecognisedReqd |
libsbml.CompFlatteningWarning = _libsbml.CompFlatteningWarning |
libsbml.CompIdRefMayReferenceUnknownPackage = _libsbml.CompIdRefMayReferenceUnknownPackage |
libsbml.CompIdRefMustReferenceObject = _libsbml.CompIdRefMustReferenceObject |
libsbml.CompInvalidConversionFactorSyntax = _libsbml.CompInvalidConversionFactorSyntax |
libsbml.CompInvalidDeletionSyntax = _libsbml.CompInvalidDeletionSyntax |
libsbml.CompInvalidExtentConvFactorSyntax = _libsbml.CompInvalidExtentConvFactorSyntax |
libsbml.CompInvalidIdRefSyntax = _libsbml.CompInvalidIdRefSyntax |
libsbml.CompInvalidMD5Syntax = _libsbml.CompInvalidMD5Syntax |
libsbml.CompInvalidMetaIdRefSyntax = _libsbml.CompInvalidMetaIdRefSyntax |
libsbml.CompInvalidModelRefSyntax = _libsbml.CompInvalidModelRefSyntax |
libsbml.CompInvalidNameSyntax = _libsbml.CompInvalidNameSyntax |
libsbml.CompInvalidPortRefSyntax = _libsbml.CompInvalidPortRefSyntax |
libsbml.CompInvalidSIdSyntax = _libsbml.CompInvalidSIdSyntax |
libsbml.CompInvalidSourceSyntax = _libsbml.CompInvalidSourceSyntax |
libsbml.CompInvalidSubmodelRefSyntax = _libsbml.CompInvalidSubmodelRefSyntax |
libsbml.CompInvalidTimeConvFactorSyntax = _libsbml.CompInvalidTimeConvFactorSyntax |
libsbml.CompInvalidUnitRefSyntax = _libsbml.CompInvalidUnitRefSyntax |
libsbml.CompLineNumbersUnreliable = _libsbml.CompLineNumbersUnreliable |
libsbml.CompLODeletionAllowedAttributes = _libsbml.CompLODeletionAllowedAttributes |
libsbml.CompLODeletionsAllowedElements = _libsbml.CompLODeletionsAllowedElements |
libsbml.CompLOExtModDefsAllowedAttributes = _libsbml.CompLOExtModDefsAllowedAttributes |
libsbml.CompLOExtModelDefsAllowedElements = _libsbml.CompLOExtModelDefsAllowedElements |
libsbml.CompLOModelDefsAllowedAttributes = _libsbml.CompLOModelDefsAllowedAttributes |
libsbml.CompLOModelDefsAllowedElements = _libsbml.CompLOModelDefsAllowedElements |
libsbml.CompLOPortsAllowedAttributes = _libsbml.CompLOPortsAllowedAttributes |
libsbml.CompLOPortsAllowedElements = _libsbml.CompLOPortsAllowedElements |
libsbml.CompLOReplacedElementsAllowedAttribs = _libsbml.CompLOReplacedElementsAllowedAttribs |
libsbml.CompLOReplaceElementsAllowedElements = _libsbml.CompLOReplaceElementsAllowedElements |
libsbml.CompLOSubmodelsAllowedAttributes = _libsbml.CompLOSubmodelsAllowedAttributes |
libsbml.CompLOSubmodelsAllowedElements = _libsbml.CompLOSubmodelsAllowedElements |
libsbml.CompMetaIdRefMayReferenceUnknownPkg = _libsbml.CompMetaIdRefMayReferenceUnknownPkg |
libsbml.CompMetaIdRefMustReferenceObject = _libsbml.CompMetaIdRefMustReferenceObject |
libsbml.CompModCannotCircularlyReferenceSelf = _libsbml.CompModCannotCircularlyReferenceSelf |
libsbml.CompModelFlatteningFailed = _libsbml.CompModelFlatteningFailed |
libsbml.CompModReferenceMustIdOfModel = _libsbml.CompModReferenceMustIdOfModel |
libsbml.CompModReferenceSyntax = _libsbml.CompModReferenceSyntax |
libsbml.CompMustReplaceIDs = _libsbml.CompMustReplaceIDs |
libsbml.CompMustReplaceMetaIDs = _libsbml.CompMustReplaceMetaIDs |
libsbml.CompMustReplacePackageIDs = _libsbml.CompMustReplacePackageIDs |
libsbml.CompMustReplaceSameClass = _libsbml.CompMustReplaceSameClass |
libsbml.CompNoEmptyListOfOnModel = _libsbml.CompNoEmptyListOfOnModel |
libsbml.CompNoModelInReference = _libsbml.CompNoModelInReference |
libsbml.CompNoMultipleReferences = _libsbml.CompNoMultipleReferences |
libsbml.CompNSUndeclared = _libsbml.CompNSUndeclared |
libsbml.CompOneListOfDeletionOnSubmodel = _libsbml.CompOneListOfDeletionOnSubmodel |
libsbml.CompOneListOfExtModelDefinitions = _libsbml.CompOneListOfExtModelDefinitions |
libsbml.CompOneListOfModelDefinitions = _libsbml.CompOneListOfModelDefinitions |
libsbml.CompOneListOfOnModel = _libsbml.CompOneListOfOnModel |
libsbml.CompOneListOfReplacedElements = _libsbml.CompOneListOfReplacedElements |
libsbml.CompOneReplacedByElement = _libsbml.CompOneReplacedByElement |
libsbml.CompOneSBaseRefOnly = _libsbml.CompOneSBaseRefOnly |
libsbml.CompParentOfSBRefChildMustBeSubmodel = _libsbml.CompParentOfSBRefChildMustBeSubmodel |
libsbml.CompPortAllowedAttributes = _libsbml.CompPortAllowedAttributes |
libsbml.CompPortMustReferenceObject = _libsbml.CompPortMustReferenceObject |
libsbml.CompPortMustReferenceOnlyOneObject = _libsbml.CompPortMustReferenceOnlyOneObject |
libsbml.CompPortReferencesUnique = _libsbml.CompPortReferencesUnique |
libsbml.CompPortRefMustReferencePort = _libsbml.CompPortRefMustReferencePort |
libsbml.CompReferenceMustBeL3 = _libsbml.CompReferenceMustBeL3 |
libsbml.CompReplacedByAllowedAttributes = _libsbml.CompReplacedByAllowedAttributes |
libsbml.CompReplacedByMustRefObject = _libsbml.CompReplacedByMustRefObject |
libsbml.CompReplacedByMustRefOnlyOne = _libsbml.CompReplacedByMustRefOnlyOne |
libsbml.CompReplacedBySubModelRef = _libsbml.CompReplacedBySubModelRef |
libsbml.CompReplacedElementAllowedAttributes = _libsbml.CompReplacedElementAllowedAttributes |
libsbml.CompReplacedElementConvFactorRef = _libsbml.CompReplacedElementConvFactorRef |
libsbml.CompReplacedElementDeletionRef = _libsbml.CompReplacedElementDeletionRef |
libsbml.CompReplacedElementMustRefObject = _libsbml.CompReplacedElementMustRefObject |
libsbml.CompReplacedElementMustRefOnlyOne = _libsbml.CompReplacedElementMustRefOnlyOne |
libsbml.CompReplacedElementNoDelAndConvFact = _libsbml.CompReplacedElementNoDelAndConvFact |
libsbml.CompReplacedElementSameReference = _libsbml.CompReplacedElementSameReference |
libsbml.CompReplacedElementSubModelRef = _libsbml.CompReplacedElementSubModelRef |
libsbml.CompReplacedUnitsShouldMatch = _libsbml.CompReplacedUnitsShouldMatch |
libsbml.CompRequiredFalseIfAllElementsReplaced = _libsbml.CompRequiredFalseIfAllElementsReplaced |
libsbml.CompRequiredTrueIfElementsRemain = _libsbml.CompRequiredTrueIfElementsRemain |
libsbml.CompSBaseRefMustReferenceObject = _libsbml.CompSBaseRefMustReferenceObject |
libsbml.CompSBaseRefMustReferenceOnlyOneObject = _libsbml.CompSBaseRefMustReferenceOnlyOneObject |
libsbml.CompSubmodelAllowedAttributes = _libsbml.CompSubmodelAllowedAttributes |
libsbml.CompSubmodelAllowedCoreAttributes = _libsbml.CompSubmodelAllowedCoreAttributes |
libsbml.CompSubmodelAllowedElements = _libsbml.CompSubmodelAllowedElements |
libsbml.CompSubmodelCannotReferenceSelf = _libsbml.CompSubmodelCannotReferenceSelf |
libsbml.CompSubmodelMustReferenceModel = _libsbml.CompSubmodelMustReferenceModel |
libsbml.CompSubmodelNoEmptyLODeletions = _libsbml.CompSubmodelNoEmptyLODeletions |
libsbml.CompTimeConversionMustBeParameter = _libsbml.CompTimeConversionMustBeParameter |
libsbml.CompUniqueModelIds = _libsbml.CompUniqueModelIds |
libsbml.CompUniquePortIds = _libsbml.CompUniquePortIds |
libsbml.CompUnitRefMustReferenceUnitDef = _libsbml.CompUnitRefMustReferenceUnitDef |
libsbml.CompUnknown = _libsbml.CompUnknown |
libsbml.CompUnresolvedReference = _libsbml.CompUnresolvedReference |
libsbml.ConstantNotValidAttribute = _libsbml.ConstantNotValidAttribute |
libsbml.ConstantSpeciesNotValidAttribute = _libsbml.ConstantSpeciesNotValidAttribute |
libsbml.ConstraintContainsDOCTYPE = _libsbml.ConstraintContainsDOCTYPE |
libsbml.ConstraintContainsXMLDecl = _libsbml.ConstraintContainsXMLDecl |
libsbml.ConstraintMathNotBoolean = _libsbml.ConstraintMathNotBoolean |
libsbml.ConstraintNotInXHTMLNamespace = _libsbml.ConstraintNotInXHTMLNamespace |
libsbml.ConstraintNotValidComponent = _libsbml.ConstraintNotValidComponent |
libsbml.ConversionFactorMustConstant = _libsbml.ConversionFactorMustConstant |
libsbml.ConversionFactorNotInL1 = _libsbml.ConversionFactorNotInL1 |
libsbml.ConversionFactorOnSpecies = _libsbml.ConversionFactorOnSpecies |
libsbml.DanglingUnitSIdRef = _libsbml.DanglingUnitSIdRef |
libsbml.DelayNeedsValuesFromTriggerTime = _libsbml.DelayNeedsValuesFromTriggerTime |
libsbml.DelayUnitsNotTime = _libsbml.DelayUnitsNotTime |
libsbml.DisallowedDefinitionURLUse = _libsbml.DisallowedDefinitionURLUse |
libsbml.DisallowedMathMLEncodingUse = _libsbml.DisallowedMathMLEncodingUse |
libsbml.DisallowedMathMLSymbol = _libsbml.DisallowedMathMLSymbol |
libsbml.DisallowedMathTypeAttributeUse = _libsbml.DisallowedMathTypeAttributeUse |
libsbml.DisallowedMathTypeAttributeValue = _libsbml.DisallowedMathTypeAttributeValue |
libsbml.DisallowedMathUnitsUse = _libsbml.DisallowedMathUnitsUse |
libsbml.DuplicateAnnotationInvalidInL2v2 = _libsbml.DuplicateAnnotationInvalidInL2v2 |
libsbml.DuplicateAnnotationInvalidInL2v3 = _libsbml.DuplicateAnnotationInvalidInL2v3 |
libsbml.DuplicateAnnotationInvalidInL2v4 = _libsbml.DuplicateAnnotationInvalidInL2v4 |
libsbml.DuplicateAnnotationInvalidInL3v1 = _libsbml.DuplicateAnnotationInvalidInL3v1 |
libsbml.DuplicateAnnotationNamespaces = _libsbml.DuplicateAnnotationNamespaces |
libsbml.DuplicateComponentId = _libsbml.DuplicateComponentId |
libsbml.DuplicateLocalParameterId = _libsbml.DuplicateLocalParameterId |
libsbml.DuplicateMetaId = _libsbml.DuplicateMetaId |
libsbml.DuplicateUnitDefinitionId = _libsbml.DuplicateUnitDefinitionId |
libsbml.DuplicateXMLAttribute = _libsbml.DuplicateXMLAttribute |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.EmptyListElement = _libsbml.EmptyListElement |
libsbml.EmptyListInKineticLaw = _libsbml.EmptyListInKineticLaw |
libsbml.EmptyListInReaction = _libsbml.EmptyListInReaction |
libsbml.EmptyListOfUnits = _libsbml.EmptyListOfUnits |
libsbml.EmptyUnitListElement = _libsbml.EmptyUnitListElement |
libsbml.EventAndAssignmentRuleForId = _libsbml.EventAndAssignmentRuleForId |
libsbml.EventAssignCompartmentMismatch = _libsbml.EventAssignCompartmentMismatch |
libsbml.EventAssignmentForConstantEntity = _libsbml.EventAssignmentForConstantEntity |
libsbml.EventAssignParameterMismatch = _libsbml.EventAssignParameterMismatch |
libsbml.EventAssignSpeciesMismatch = _libsbml.EventAssignSpeciesMismatch |
libsbml.EventAssignStoichiometryMismatch = _libsbml.EventAssignStoichiometryMismatch |
libsbml.EventNotValidComponent = _libsbml.EventNotValidComponent |
libsbml.ExtentUnitsNotSubstance = _libsbml.ExtentUnitsNotSubstance |
libsbml.FailedMathMLReadOfDouble = _libsbml.FailedMathMLReadOfDouble |
libsbml.FailedMathMLReadOfExponential = _libsbml.FailedMathMLReadOfExponential |
libsbml.FailedMathMLReadOfInteger = _libsbml.FailedMathMLReadOfInteger |
libsbml.FailedMathMLReadOfRational = _libsbml.FailedMathMLReadOfRational |
libsbml.FbcActiveObjectiveRefersObjective = _libsbml.FbcActiveObjectiveRefersObjective |
libsbml.FbcActiveObjectiveSyntax = _libsbml.FbcActiveObjectiveSyntax |
libsbml.FbcAttributeRequiredMissing = _libsbml.FbcAttributeRequiredMissing |
libsbml.FbcAttributeRequiredMustBeBoolean = _libsbml.FbcAttributeRequiredMustBeBoolean |
libsbml.FbcDuplicateComponentId = _libsbml.FbcDuplicateComponentId |
libsbml.FbcElementNotInNs = _libsbml.FbcElementNotInNs |
libsbml.FbcFluxBoundAllowedElements = _libsbml.FbcFluxBoundAllowedElements |
libsbml.FbcFluxBoundAllowedL3Attributes = _libsbml.FbcFluxBoundAllowedL3Attributes |
libsbml.FbcFluxBoundNameMustBeString = _libsbml.FbcFluxBoundNameMustBeString |
libsbml.FbcFluxBoundOperationMustBeEnum = _libsbml.FbcFluxBoundOperationMustBeEnum |
libsbml.FbcFluxBoundReactionMustExist = _libsbml.FbcFluxBoundReactionMustExist |
libsbml.FbcFluxBoundRectionMustBeSIdRef = _libsbml.FbcFluxBoundRectionMustBeSIdRef |
libsbml.FbcFluxBoundRequiredAttributes = _libsbml.FbcFluxBoundRequiredAttributes |
libsbml.FbcFluxBoundsForReactionConflict = _libsbml.FbcFluxBoundsForReactionConflict |
libsbml.FbcFluxBoundValueMustBeDouble = _libsbml.FbcFluxBoundValueMustBeDouble |
libsbml.FbcFluxObjectAllowedElements = _libsbml.FbcFluxObjectAllowedElements |
libsbml.FbcFluxObjectAllowedL3Attributes = _libsbml.FbcFluxObjectAllowedL3Attributes |
libsbml.FbcFluxObjectCoefficientMustBeDouble = _libsbml.FbcFluxObjectCoefficientMustBeDouble |
libsbml.FbcFluxObjectNameMustBeString = _libsbml.FbcFluxObjectNameMustBeString |
libsbml.FbcFluxObjectReactionMustBeSIdRef = _libsbml.FbcFluxObjectReactionMustBeSIdRef |
libsbml.FbcFluxObjectReactionMustExist = _libsbml.FbcFluxObjectReactionMustExist |
libsbml.FbcFluxObjectRequiredAttributes = _libsbml.FbcFluxObjectRequiredAttributes |
libsbml.FbcLOFluxBoundsAllowedAttributes = _libsbml.FbcLOFluxBoundsAllowedAttributes |
libsbml.FbcLOFluxBoundsAllowedElements = _libsbml.FbcLOFluxBoundsAllowedElements |
libsbml.FbcLOObjectivesAllowedAttributes = _libsbml.FbcLOObjectivesAllowedAttributes |
libsbml.FbcLOObjectivesAllowedElements = _libsbml.FbcLOObjectivesAllowedElements |
libsbml.FbcNoEmptyListOfs = _libsbml.FbcNoEmptyListOfs |
libsbml.FbcNSUndeclared = _libsbml.FbcNSUndeclared |
libsbml.FbcObjectiveAllowedElements = _libsbml.FbcObjectiveAllowedElements |
libsbml.FbcObjectiveAllowedL3Attributes = _libsbml.FbcObjectiveAllowedL3Attributes |
libsbml.FbcObjectiveLOFluxObjAllowedAttribs = _libsbml.FbcObjectiveLOFluxObjAllowedAttribs |
libsbml.FbcObjectiveLOFluxObjMustNotBeEmpty = _libsbml.FbcObjectiveLOFluxObjMustNotBeEmpty |
libsbml.FbcObjectiveLOFluxObjOnlyFluxObj = _libsbml.FbcObjectiveLOFluxObjOnlyFluxObj |
libsbml.FbcObjectiveNameMustBeString = _libsbml.FbcObjectiveNameMustBeString |
libsbml.FbcObjectiveOneListOfObjectives = _libsbml.FbcObjectiveOneListOfObjectives |
libsbml.FbcObjectiveRequiredAttributes = _libsbml.FbcObjectiveRequiredAttributes |
libsbml.FbcObjectiveTypeMustBeEnum = _libsbml.FbcObjectiveTypeMustBeEnum |
libsbml.FbcOnlyOneEachListOf = _libsbml.FbcOnlyOneEachListOf |
libsbml.FbcRequiredFalse = _libsbml.FbcRequiredFalse |
libsbml.FbcSBMLSIdSyntax = _libsbml.FbcSBMLSIdSyntax |
libsbml.FbcSpeciesAllowedL3Attributes = _libsbml.FbcSpeciesAllowedL3Attributes |
libsbml.FbcSpeciesChargeMustBeInteger = _libsbml.FbcSpeciesChargeMustBeInteger |
libsbml.FbcSpeciesFormulaMustBeString = _libsbml.FbcSpeciesFormulaMustBeString |
libsbml.FbcUnknown = _libsbml.FbcUnknown |
libsbml.FLUXBOUND_OPERATION_EQUAL = _libsbml.FLUXBOUND_OPERATION_EQUAL |
fbc One of the possible FluxBound operation types.
The FluxBound class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to to hold a single equality or inequality that represents the maximum or minimum value a reaction flux can obtain at steady state. One of the attributes of FluxBound is "operation". This code is one of the possible values of the "operation" attribute. The possible legal values are less than or equal to, greater than or equal to, or equal to. The additional two options "less than" and "greater than" are not legal values for the FluxBound "operation" attribute, but are provided to allow backwards compatibility with an earlier version of the draft specification.
libsbml.FLUXBOUND_OPERATION_GREATER = _libsbml.FLUXBOUND_OPERATION_GREATER |
fbc One of the possible FluxBound operation types.
The FluxBound class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to to hold a single equality or inequality that represents the maximum or minimum value a reaction flux can obtain at steady state. One of the attributes of FluxBound is "operation". This code is one of the possible values of the "operation" attribute. The possible legal values are less than or equal to, greater than or equal to, or equal to. The additional two options "less than" and "greater than" are not legal values for the FluxBound "operation" attribute, but are provided to allow backwards compatibility with an earlier version of the draft specification.
libsbml.FLUXBOUND_OPERATION_GREATER_EQUAL = _libsbml.FLUXBOUND_OPERATION_GREATER_EQUAL |
fbc One of the possible FluxBound operation types.
The FluxBound class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to to hold a single equality or inequality that represents the maximum or minimum value a reaction flux can obtain at steady state. One of the attributes of FluxBound is "operation". This code is one of the possible values of the "operation" attribute. The possible legal values are less than or equal to, greater than or equal to, or equal to. The additional two options "less than" and "greater than" are not legal values for the FluxBound "operation" attribute, but are provided to allow backwards compatibility with an earlier version of the draft specification.
libsbml.FLUXBOUND_OPERATION_LESS = _libsbml.FLUXBOUND_OPERATION_LESS |
fbc One of the possible FluxBound operation types.
The FluxBound class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to to hold a single equality or inequality that represents the maximum or minimum value a reaction flux can obtain at steady state. One of the attributes of FluxBound is "operation". This code is one of the possible values of the "operation" attribute. The possible legal values are less than or equal to, greater than or equal to, or equal to. The additional two options "less than" and "greater than" are not legal values for the FluxBound "operation" attribute, but are provided to allow backwards compatibility with an earlier version of the draft specification.
libsbml.FLUXBOUND_OPERATION_LESS_EQUAL = _libsbml.FLUXBOUND_OPERATION_LESS_EQUAL |
FluxBoundOperation_t.
fbc One of the possible FluxBound operation types.
The FluxBound class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to to hold a single equality or inequality that represents the maximum or minimum value a reaction flux can obtain at steady state. One of the attributes of FluxBound is "operation". This code is one of the possible values of the "operation" attribute. The possible legal values are less than or equal to, greater than or equal to, or equal to. The additional two options "less than" and "greater than" are not legal values for the FluxBound "operation" attribute, but are provided to allow backwards compatibility with an earlier version of the draft specification.
libsbml.FLUXBOUND_OPERATION_UNKNOWN = _libsbml.FLUXBOUND_OPERATION_UNKNOWN |
libsbml.FormulaInLevel1KL = _libsbml.FormulaInLevel1KL |
libsbml.FuncDefNotValidComponent = _libsbml.FuncDefNotValidComponent |
libsbml.FunctionDefMathNotLambda = _libsbml.FunctionDefMathNotLambda |
libsbml.GENE_ASSOCIATION = _libsbml.GENE_ASSOCIATION |
AssociationTypeCode_t.
fbc One of the possible Association types.
The Association class is not part of the official SBML Level 3 Flux Balance Constraints specification, but is instead a proposed future development of the package. If adopted, it would be a child of a GeneAssociation that would describe a single 'and' or 'or' relationship between two or more genes or other associations.
The present code is one of the possible Association types for this proposed SBML Level 3 Flux Balance Constraints (“fbc”) package future development.
libsbml.GeneralWarningNotSpecified = _libsbml.GeneralWarningNotSpecified |
libsbml.GlobalUnitsNotDeclared = _libsbml.GlobalUnitsNotDeclared |
libsbml.HasOnlySubsNoSpatialUnits = _libsbml.HasOnlySubsNoSpatialUnits |
libsbml.HasOnlySubstanceUnitsNotinL1 = _libsbml.HasOnlySubstanceUnitsNotinL1 |
libsbml.HasOnlySubsUnitsNotValidAttribute = _libsbml.HasOnlySubsUnitsNotValidAttribute |
libsbml.IdNotValidAttribute = _libsbml.IdNotValidAttribute |
libsbml.InconsistentArgUnits = _libsbml.InconsistentArgUnits |
libsbml.InconsistentArgUnitsWarnings = _libsbml.InconsistentArgUnitsWarnings |
libsbml.InconsistentExponUnitsWarnings = _libsbml.InconsistentExponUnitsWarnings |
libsbml.InconsistentKineticLawUnitsL3 = _libsbml.InconsistentKineticLawUnitsL3 |
libsbml.InconsistentPowerUnitsWarnings = _libsbml.InconsistentPowerUnitsWarnings |
libsbml.IncorrectCompartmentSpatialDimensions = _libsbml.IncorrectCompartmentSpatialDimensions |
libsbml.IncorrectOrderInConstraint = _libsbml.IncorrectOrderInConstraint |
libsbml.IncorrectOrderInEvent = _libsbml.IncorrectOrderInEvent |
libsbml.IncorrectOrderInKineticLaw = _libsbml.IncorrectOrderInKineticLaw |
libsbml.IncorrectOrderInModel = _libsbml.IncorrectOrderInModel |
libsbml.IncorrectOrderInReaction = _libsbml.IncorrectOrderInReaction |
libsbml.InitAssignCompartmenMismatch = _libsbml.InitAssignCompartmenMismatch |
libsbml.InitAssignmentAndRuleForSameId = _libsbml.InitAssignmentAndRuleForSameId |
libsbml.InitAssignParameterMismatch = _libsbml.InitAssignParameterMismatch |
libsbml.InitAssignSpeciesMismatch = _libsbml.InitAssignSpeciesMismatch |
libsbml.InitAssignStoichiometryMismatch = _libsbml.InitAssignStoichiometryMismatch |
libsbml.InitialAssignNotValidComponent = _libsbml.InitialAssignNotValidComponent |
libsbml.InitialValueFalseEventNotSupported = _libsbml.InitialValueFalseEventNotSupported |
libsbml.InitialValueNotBoolean = _libsbml.InitialValueNotBoolean |
libsbml.INPUT_SIGN_DUAL = _libsbml.INPUT_SIGN_DUAL |
qual One of the possible Input "sign" attribute values.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "sign" that is used to indicate whether the contribution of this input is positive, negative, both (dual) or unknown. This enables a model to distinguish between stimulation and inhibition and can facilitate interpretation of themodel without the mathematics. The sign is particularly used for visualization purposes and has no impact on the mathematical interpretation.
The present code is one of the possible values of the "sign" attribute of an Input object.
libsbml.INPUT_SIGN_NEGATIVE = _libsbml.INPUT_SIGN_NEGATIVE |
qual One of the possible Input "sign" attribute values.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "sign" that is used to indicate whether the contribution of this input is positive, negative, both (dual) or unknown. This enables a model to distinguish between stimulation and inhibition and can facilitate interpretation of themodel without the mathematics. The sign is particularly used for visualization purposes and has no impact on the mathematical interpretation.
The present code is one of the possible values of the "sign" attribute of an Input object.
libsbml.INPUT_SIGN_POSITIVE = _libsbml.INPUT_SIGN_POSITIVE |
InputSign_t.
qual One of the possible Input "sign" attribute values.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "sign" that is used to indicate whether the contribution of this input is positive, negative, both (dual) or unknown. This enables a model to distinguish between stimulation and inhibition and can facilitate interpretation of themodel without the mathematics. The sign is particularly used for visualization purposes and has no impact on the mathematical interpretation.
The present code is one of the possible values of the "sign" attribute of an Input object.
libsbml.INPUT_SIGN_UNKNOWN = _libsbml.INPUT_SIGN_UNKNOWN |
qual One of the possible Input "sign" attribute values.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "sign" that is used to indicate whether the contribution of this input is positive, negative, both (dual) or unknown. This enables a model to distinguish between stimulation and inhibition and can facilitate interpretation of themodel without the mathematics. The sign is particularly used for visualization purposes and has no impact on the mathematical interpretation.
The present code is one of the possible values of the "sign" attribute of an Input object.
libsbml.INPUT_SIGN_VALUE_NOTSET = _libsbml.INPUT_SIGN_VALUE_NOTSET |
qual One of the possible Input "sign" attribute values.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "sign" that is used to indicate whether the contribution of this input is positive, negative, both (dual) or unknown. This enables a model to distinguish between stimulation and inhibition and can facilitate interpretation of themodel without the mathematics. The sign is particularly used for visualization purposes and has no impact on the mathematical interpretation.
The present code is one of the possible values of the "sign" attribute of an Input object.
libsbml.INPUT_TRANSITION_EFFECT_CONSUMPTION = _libsbml.INPUT_TRANSITION_EFFECT_CONSUMPTION |
qual One of the possible Input transition effects.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "transitionEffect" that is used to describe how the QualitativeSpecies referenced by the Input is affected by the Transition.
The present code is one of the possible values of the "transitionEffect" attribute of an Input object.
libsbml.INPUT_TRANSITION_EFFECT_NONE = _libsbml.INPUT_TRANSITION_EFFECT_NONE |
InputTransitionEffect_t.
qual One of the possible Input transition effects.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "transitionEffect" that is used to describe how the QualitativeSpecies referenced by the Input is affected by the Transition.
The present code is one of the possible values of the "transitionEffect" attribute of an Input object.
libsbml.INPUT_TRANSITION_EFFECT_UNKNOWN = _libsbml.INPUT_TRANSITION_EFFECT_UNKNOWN |
qual One of the possible Input transition effects.
The Input class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that participates in a Transition; specifically, in Petri nets, these are the input places of the transition, and in logical models, they are the regulators of the species whose behaviour is defined by the transition. Input has an attribute named "transitionEffect" that is used to describe how the QualitativeSpecies referenced by the Input is affected by the Transition.
The present code is one of the possible values of the "transitionEffect" attribute of an Input object.
libsbml.IntegerSpatialDimensions = _libsbml.IntegerSpatialDimensions |
libsbml.InternalXMLParserError = _libsbml.InternalXMLParserError |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.Invalid1DCompartmentUnits = _libsbml.Invalid1DCompartmentUnits |
libsbml.Invalid2DCompartmentUnits = _libsbml.Invalid2DCompartmentUnits |
libsbml.Invalid3DCompartmentUnits = _libsbml.Invalid3DCompartmentUnits |
libsbml.InvalidAfterXMLContent = _libsbml.InvalidAfterXMLContent |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.InvalidApplyCiInLambda = _libsbml.InvalidApplyCiInLambda |
libsbml.InvalidAreaRedefinition = _libsbml.InvalidAreaRedefinition |
libsbml.InvalidAssignRuleVariable = _libsbml.InvalidAssignRuleVariable |
libsbml.InvalidCharInXML = _libsbml.InvalidCharInXML |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.InvalidCiInLambda = _libsbml.InvalidCiInLambda |
libsbml.InvalidCompartmentSBOTerm = _libsbml.InvalidCompartmentSBOTerm |
libsbml.InvalidCompartmentTypeRef = _libsbml.InvalidCompartmentTypeRef |
libsbml.InvalidCompartmentTypeSBOTerm = _libsbml.InvalidCompartmentTypeSBOTerm |
libsbml.InvalidConstraintContent = _libsbml.InvalidConstraintContent |
libsbml.InvalidConstraintSBOTerm = _libsbml.InvalidConstraintSBOTerm |
libsbml.InvalidDelaySBOTerm = _libsbml.InvalidDelaySBOTerm |
libsbml.InvalidEventAssignmentSBOTerm = _libsbml.InvalidEventAssignmentSBOTerm |
libsbml.InvalidEventAssignmentVariable = _libsbml.InvalidEventAssignmentVariable |
libsbml.InvalidEventSBOTerm = _libsbml.InvalidEventSBOTerm |
libsbml.InvalidFunctionDefReturnType = _libsbml.InvalidFunctionDefReturnType |
libsbml.InvalidFunctionDefSBOTerm = _libsbml.InvalidFunctionDefSBOTerm |
libsbml.InvalidIdSyntax = _libsbml.InvalidIdSyntax |
libsbml.InvalidInitAssignSBOTerm = _libsbml.InvalidInitAssignSBOTerm |
libsbml.InvalidInitAssignSymbol = _libsbml.InvalidInitAssignSymbol |
libsbml.InvalidKineticLawSBOTerm = _libsbml.InvalidKineticLawSBOTerm |
libsbml.InvalidL1CompartmentUnits = _libsbml.InvalidL1CompartmentUnits |
libsbml.InvalidLengthRedefinition = _libsbml.InvalidLengthRedefinition |
libsbml.InvalidMathElement = _libsbml.InvalidMathElement |
libsbml.InvalidMathMLAttribute = _libsbml.InvalidMathMLAttribute |
Attribute not allowed on this element.
libsbml.InvalidMetaidSyntax = _libsbml.InvalidMetaidSyntax |
libsbml.InvalidModelSBOTerm = _libsbml.InvalidModelSBOTerm |
libsbml.InvalidModifiersList = _libsbml.InvalidModifiersList |
libsbml.InvalidNamespaceOnSBML = _libsbml.InvalidNamespaceOnSBML |
libsbml.InvalidNameSyntax = _libsbml.InvalidNameSyntax |
libsbml.InvalidNoArgsPassedToFunctionDef = _libsbml.InvalidNoArgsPassedToFunctionDef |
libsbml.InvalidNotesContent = _libsbml.InvalidNotesContent |
libsbml.InvalidParameterSBOTerm = _libsbml.InvalidParameterSBOTerm |
libsbml.InvalidParameterUnits = _libsbml.InvalidParameterUnits |
libsbml.InvalidRateRuleVariable = _libsbml.InvalidRateRuleVariable |
libsbml.InvalidReactantsProductsList = _libsbml.InvalidReactantsProductsList |
libsbml.InvalidReactionSBOTerm = _libsbml.InvalidReactionSBOTerm |
libsbml.InvalidRuleOrdering = _libsbml.InvalidRuleOrdering |
libsbml.InvalidRuleSBOTerm = _libsbml.InvalidRuleSBOTerm |
libsbml.InvalidSBMLLevelVersion = _libsbml.InvalidSBMLLevelVersion |
libsbml.InvalidSBOTermSyntax = _libsbml.InvalidSBOTermSyntax |
libsbml.InvalidSpeciesCompartmentRef = _libsbml.InvalidSpeciesCompartmentRef |
libsbml.InvalidSpeciesReference = _libsbml.InvalidSpeciesReference |
libsbml.InvalidSpeciesReferenceSBOTerm = _libsbml.InvalidSpeciesReferenceSBOTerm |
libsbml.InvalidSpeciesSBOTerm = _libsbml.InvalidSpeciesSBOTerm |
libsbml.InvalidSpeciesSusbstanceUnits = _libsbml.InvalidSpeciesSusbstanceUnits |
libsbml.InvalidSpeciesTypeRef = _libsbml.InvalidSpeciesTypeRef |
libsbml.InvalidSpeciesTypeSBOTerm = _libsbml.InvalidSpeciesTypeSBOTerm |
libsbml.InvalidSubstanceRedefinition = _libsbml.InvalidSubstanceRedefinition |
libsbml.InvalidTargetLevelVersion = _libsbml.InvalidTargetLevelVersion |
libsbml.InvalidTimeRedefinition = _libsbml.InvalidTimeRedefinition |
libsbml.InvalidTriggerSBOTerm = _libsbml.InvalidTriggerSBOTerm |
libsbml.InvalidUnitDefId = _libsbml.InvalidUnitDefId |
libsbml.InvalidUnitIdSyntax = _libsbml.InvalidUnitIdSyntax |
libsbml.InvalidUnitKind = _libsbml.InvalidUnitKind |
libsbml.InvalidUnitsValue = _libsbml.InvalidUnitsValue |
libsbml.InvalidVolumeRedefinition = _libsbml.InvalidVolumeRedefinition |
libsbml.InvalidXMLConstruct = _libsbml.InvalidXMLConstruct |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.KineticLawNotSubstancePerTime = _libsbml.KineticLawNotSubstancePerTime |
libsbml.KineticLawParametersAreLocalOnly = _libsbml.KineticLawParametersAreLocalOnly |
libsbml.L1V1CompartmentVolumeReqd = _libsbml.L1V1CompartmentVolumeReqd |
libsbml.L3AreaUnitsOnModel = _libsbml.L3AreaUnitsOnModel |
libsbml.L3ConversionFactorOnModel = _libsbml.L3ConversionFactorOnModel |
libsbml.L3ExtentUnitsOnModel = _libsbml.L3ExtentUnitsOnModel |
libsbml.L3LengthUnitsOnModel = _libsbml.L3LengthUnitsOnModel |
libsbml.L3NotSchemaConformant = _libsbml.L3NotSchemaConformant |
libsbml.L3NotSupported = _libsbml.L3NotSupported |
libsbml.L3P_AVOGADRO_IS_CSYMBOL = _libsbml.L3P_AVOGADRO_IS_CSYMBOL |
Do not treat 'avogadro' specially—consider it a plain symbol name when parsing text-string formulas.
libsbml.L3P_AVOGADRO_IS_NAME = _libsbml.L3P_AVOGADRO_IS_NAME |
libsbml.L3P_COLLAPSE_UNARY_MINUS = _libsbml.L3P_COLLAPSE_UNARY_MINUS |
Retain unary minuses in the AST representation when parsing text-string formulas.
libsbml.L3P_EXPAND_UNARY_MINUS = _libsbml.L3P_EXPAND_UNARY_MINUS |
Parse units in text-string formulas when parsing text-string formulas.
libsbml.L3P_NO_UNITS = _libsbml.L3P_NO_UNITS |
Recognize 'avogadro' as an SBML Level 3 symbol when parsing text-string formulas.
libsbml.L3P_PARSE_LOG_AS_ERROR = _libsbml.L3P_PARSE_LOG_AS_ERROR |
Collapse unary minuses where possible when parsing text-string formulas.
libsbml.L3P_PARSE_LOG_AS_LN = _libsbml.L3P_PARSE_LOG_AS_LN |
Refuse to parse log(x)
at all, and set an error message telling the user to use log10(x)
, ln(x)
, or log(base, x)
instead.
libsbml.L3P_PARSE_LOG_AS_LOG10 = _libsbml.L3P_PARSE_LOG_AS_LOG10 |
Parse log(x)
as the natural logarithm of x
.
libsbml.L3P_PARSE_UNITS = _libsbml.L3P_PARSE_UNITS |
Do not recognize units in text-string formulas—treat them as errors.
libsbml.L3PackageOnLowerSBML = _libsbml.L3PackageOnLowerSBML |
libsbml.L3SpatialDimensionsUnset = _libsbml.L3SpatialDimensionsUnset |
libsbml.L3SubstanceUnitsOnModel = _libsbml.L3SubstanceUnitsOnModel |
libsbml.L3TimeUnitsOnModel = _libsbml.L3TimeUnitsOnModel |
libsbml.L3VolumeUnitsOnModel = _libsbml.L3VolumeUnitsOnModel |
libsbml.LambdaOnlyAllowedInFunctionDef = _libsbml.LambdaOnlyAllowedInFunctionDef |
libsbml.LayoutAttributeRequiredMissing = _libsbml.LayoutAttributeRequiredMissing |
libsbml.LayoutAttributeRequiredMustBeBoolean = _libsbml.LayoutAttributeRequiredMustBeBoolean |
libsbml.LayoutBBoxAllowedAttributes = _libsbml.LayoutBBoxAllowedAttributes |
libsbml.LayoutBBoxAllowedCoreAttributes = _libsbml.LayoutBBoxAllowedCoreAttributes |
libsbml.LayoutBBoxAllowedCoreElements = _libsbml.LayoutBBoxAllowedCoreElements |
libsbml.LayoutBBoxAllowedElements = _libsbml.LayoutBBoxAllowedElements |
libsbml.LayoutBBoxConsistent3DDefinition = _libsbml.LayoutBBoxConsistent3DDefinition |
libsbml.LayoutCBezAllowedAttributes = _libsbml.LayoutCBezAllowedAttributes |
libsbml.LayoutCBezAllowedCoreAttributes = _libsbml.LayoutCBezAllowedCoreAttributes |
libsbml.LayoutCBezAllowedCoreElements = _libsbml.LayoutCBezAllowedCoreElements |
libsbml.LayoutCBezAllowedElements = _libsbml.LayoutCBezAllowedElements |
libsbml.LayoutCGAllowedAttributes = _libsbml.LayoutCGAllowedAttributes |
libsbml.LayoutCGAllowedCoreAttributes = _libsbml.LayoutCGAllowedCoreAttributes |
libsbml.LayoutCGAllowedCoreElements = _libsbml.LayoutCGAllowedCoreElements |
libsbml.LayoutCGAllowedElements = _libsbml.LayoutCGAllowedElements |
libsbml.LayoutCGCompartmentMustRefComp = _libsbml.LayoutCGCompartmentMustRefComp |
libsbml.LayoutCGCompartmentSyntax = _libsbml.LayoutCGCompartmentSyntax |
libsbml.LayoutCGMetaIdRefMustBeIDREF = _libsbml.LayoutCGMetaIdRefMustBeIDREF |
libsbml.LayoutCGMetaIdRefMustReferenceObject = _libsbml.LayoutCGMetaIdRefMustReferenceObject |
libsbml.LayoutCGNoDuplicateReferences = _libsbml.LayoutCGNoDuplicateReferences |
libsbml.LayoutCGOrderMustBeDouble = _libsbml.LayoutCGOrderMustBeDouble |
libsbml.LayoutCurveAllowedAttributes = _libsbml.LayoutCurveAllowedAttributes |
libsbml.LayoutCurveAllowedCoreAttributes = _libsbml.LayoutCurveAllowedCoreAttributes |
libsbml.LayoutCurveAllowedCoreElements = _libsbml.LayoutCurveAllowedCoreElements |
libsbml.LayoutCurveAllowedElements = _libsbml.LayoutCurveAllowedElements |
libsbml.LayoutDimsAllowedAttributes = _libsbml.LayoutDimsAllowedAttributes |
libsbml.LayoutDimsAllowedCoreAttributes = _libsbml.LayoutDimsAllowedCoreAttributes |
libsbml.LayoutDimsAllowedCoreElements = _libsbml.LayoutDimsAllowedCoreElements |
libsbml.LayoutDimsAttributesMustBeDouble = _libsbml.LayoutDimsAttributesMustBeDouble |
libsbml.LayoutDuplicateComponentId = _libsbml.LayoutDuplicateComponentId |
libsbml.LayoutElementNotInNs = _libsbml.LayoutElementNotInNs |
libsbml.LayoutGGAllowedAttributes = _libsbml.LayoutGGAllowedAttributes |
libsbml.LayoutGGAllowedCoreAttributes = _libsbml.LayoutGGAllowedCoreAttributes |
libsbml.LayoutGGAllowedCoreElements = _libsbml.LayoutGGAllowedCoreElements |
libsbml.LayoutGGAllowedElements = _libsbml.LayoutGGAllowedElements |
libsbml.LayoutGGMetaIdRefMustBeIDREF = _libsbml.LayoutGGMetaIdRefMustBeIDREF |
libsbml.LayoutGGMetaIdRefMustReferenceObject = _libsbml.LayoutGGMetaIdRefMustReferenceObject |
libsbml.LayoutGGNoDuplicateReferences = _libsbml.LayoutGGNoDuplicateReferences |
libsbml.LayoutGGReferenceMustRefObject = _libsbml.LayoutGGReferenceMustRefObject |
libsbml.LayoutGGReferenceSyntax = _libsbml.LayoutGGReferenceSyntax |
libsbml.LayoutGOAllowedAttributes = _libsbml.LayoutGOAllowedAttributes |
libsbml.LayoutGOAllowedCoreAttributes = _libsbml.LayoutGOAllowedCoreAttributes |
libsbml.LayoutGOAllowedCoreElements = _libsbml.LayoutGOAllowedCoreElements |
libsbml.LayoutGOAllowedElements = _libsbml.LayoutGOAllowedElements |
libsbml.LayoutGOMetaIdRefMustBeIDREF = _libsbml.LayoutGOMetaIdRefMustBeIDREF |
libsbml.LayoutGOMetaIdRefMustReferenceObject = _libsbml.LayoutGOMetaIdRefMustReferenceObject |
libsbml.LayoutGOMustContainBoundingBox = _libsbml.LayoutGOMustContainBoundingBox |
libsbml.LayoutLayoutAllowedAttributes = _libsbml.LayoutLayoutAllowedAttributes |
libsbml.LayoutLayoutAllowedCoreAttributes = _libsbml.LayoutLayoutAllowedCoreAttributes |
libsbml.LayoutLayoutAllowedElements = _libsbml.LayoutLayoutAllowedElements |
libsbml.LayoutLayoutMustHaveDimensions = _libsbml.LayoutLayoutMustHaveDimensions |
libsbml.LayoutLayoutNameMustBeString = _libsbml.LayoutLayoutNameMustBeString |
libsbml.LayoutLOAddGOAllowedAttribut = _libsbml.LayoutLOAddGOAllowedAttribut |
libsbml.LayoutLOAddGOAllowedElements = _libsbml.LayoutLOAddGOAllowedElements |
libsbml.LayoutLOCompGlyphAllowedAttributes = _libsbml.LayoutLOCompGlyphAllowedAttributes |
libsbml.LayoutLOCompGlyphAllowedElements = _libsbml.LayoutLOCompGlyphAllowedElements |
libsbml.LayoutLOCurveSegsAllowedAttributes = _libsbml.LayoutLOCurveSegsAllowedAttributes |
libsbml.LayoutLOCurveSegsAllowedElements = _libsbml.LayoutLOCurveSegsAllowedElements |
libsbml.LayoutLOCurveSegsNotEmpty = _libsbml.LayoutLOCurveSegsNotEmpty |
libsbml.LayoutLOLayoutsAllowedAttributes = _libsbml.LayoutLOLayoutsAllowedAttributes |
libsbml.LayoutLOLayoutsAllowedElements = _libsbml.LayoutLOLayoutsAllowedElements |
libsbml.LayoutLOLayoutsNotEmpty = _libsbml.LayoutLOLayoutsNotEmpty |
libsbml.LayoutLOReferenceGlyphAllowedAttribs = _libsbml.LayoutLOReferenceGlyphAllowedAttribs |
libsbml.LayoutLOReferenceGlyphAllowedElements = _libsbml.LayoutLOReferenceGlyphAllowedElements |
libsbml.LayoutLORnGlyphAllowedAttributes = _libsbml.LayoutLORnGlyphAllowedAttributes |
libsbml.LayoutLORnGlyphAllowedElements = _libsbml.LayoutLORnGlyphAllowedElements |
libsbml.LayoutLOSpeciesGlyphAllowedAttributes = _libsbml.LayoutLOSpeciesGlyphAllowedAttributes |
libsbml.LayoutLOSpeciesGlyphAllowedElements = _libsbml.LayoutLOSpeciesGlyphAllowedElements |
libsbml.LayoutLOSpeciesRefGlyphAllowedAttribs = _libsbml.LayoutLOSpeciesRefGlyphAllowedAttribs |
libsbml.LayoutLOSpeciesRefGlyphAllowedElements = _libsbml.LayoutLOSpeciesRefGlyphAllowedElements |
libsbml.LayoutLOSpeciesRefGlyphNotEmpty = _libsbml.LayoutLOSpeciesRefGlyphNotEmpty |
libsbml.LayoutLOSubGlyphAllowedAttribs = _libsbml.LayoutLOSubGlyphAllowedAttribs |
libsbml.LayoutLOSubGlyphAllowedElements = _libsbml.LayoutLOSubGlyphAllowedElements |
libsbml.LayoutLOTextGlyphAllowedAttributes = _libsbml.LayoutLOTextGlyphAllowedAttributes |
libsbml.LayoutLOTextGlyphAllowedElements = _libsbml.LayoutLOTextGlyphAllowedElements |
libsbml.LayoutLSegAllowedAttributes = _libsbml.LayoutLSegAllowedAttributes |
libsbml.LayoutLSegAllowedCoreAttributes = _libsbml.LayoutLSegAllowedCoreAttributes |
libsbml.LayoutLSegAllowedCoreElements = _libsbml.LayoutLSegAllowedCoreElements |
libsbml.LayoutLSegAllowedElements = _libsbml.LayoutLSegAllowedElements |
libsbml.LayoutNoEmptyListOfs = _libsbml.LayoutNoEmptyListOfs |
libsbml.LayoutNSUndeclared = _libsbml.LayoutNSUndeclared |
libsbml.LayoutOnlyOneEachListOf = _libsbml.LayoutOnlyOneEachListOf |
libsbml.LayoutOnlyOneLOLayouts = _libsbml.LayoutOnlyOneLOLayouts |
libsbml.LayoutPointAllowedAttributes = _libsbml.LayoutPointAllowedAttributes |
libsbml.LayoutPointAllowedCoreAttributes = _libsbml.LayoutPointAllowedCoreAttributes |
libsbml.LayoutPointAllowedCoreElements = _libsbml.LayoutPointAllowedCoreElements |
libsbml.LayoutPointAttributesMustBeDouble = _libsbml.LayoutPointAttributesMustBeDouble |
libsbml.LayoutREFGAllowedAttributes = _libsbml.LayoutREFGAllowedAttributes |
libsbml.LayoutREFGAllowedCoreAttributes = _libsbml.LayoutREFGAllowedCoreAttributes |
libsbml.LayoutREFGAllowedCoreElements = _libsbml.LayoutREFGAllowedCoreElements |
libsbml.LayoutREFGAllowedElements = _libsbml.LayoutREFGAllowedElements |
libsbml.LayoutREFGGlyphMustRefObject = _libsbml.LayoutREFGGlyphMustRefObject |
libsbml.LayoutREFGGlyphSyntax = _libsbml.LayoutREFGGlyphSyntax |
libsbml.LayoutREFGMetaIdRefMustBeIDREF = _libsbml.LayoutREFGMetaIdRefMustBeIDREF |
libsbml.LayoutREFGMetaIdRefMustReferenceObject = _libsbml.LayoutREFGMetaIdRefMustReferenceObject |
libsbml.LayoutREFGNoDuplicateReferences = _libsbml.LayoutREFGNoDuplicateReferences |
libsbml.LayoutREFGReferenceMustRefObject = _libsbml.LayoutREFGReferenceMustRefObject |
libsbml.LayoutREFGReferenceSyntax = _libsbml.LayoutREFGReferenceSyntax |
libsbml.LayoutREFGRoleSyntax = _libsbml.LayoutREFGRoleSyntax |
libsbml.LayoutRequiredFalse = _libsbml.LayoutRequiredFalse |
libsbml.LayoutRGAllowedAttributes = _libsbml.LayoutRGAllowedAttributes |
libsbml.LayoutRGAllowedCoreAttributes = _libsbml.LayoutRGAllowedCoreAttributes |
libsbml.LayoutRGAllowedCoreElements = _libsbml.LayoutRGAllowedCoreElements |
libsbml.LayoutRGAllowedElements = _libsbml.LayoutRGAllowedElements |
libsbml.LayoutRGMetaIdRefMustBeIDREF = _libsbml.LayoutRGMetaIdRefMustBeIDREF |
libsbml.LayoutRGMetaIdRefMustReferenceObject = _libsbml.LayoutRGMetaIdRefMustReferenceObject |
libsbml.LayoutRGNoDuplicateReferences = _libsbml.LayoutRGNoDuplicateReferences |
libsbml.LayoutRGReactionMustRefReaction = _libsbml.LayoutRGReactionMustRefReaction |
libsbml.LayoutRGReactionSyntax = _libsbml.LayoutRGReactionSyntax |
libsbml.LayoutSGAllowedAttributes = _libsbml.LayoutSGAllowedAttributes |
libsbml.LayoutSGAllowedCoreAttributes = _libsbml.LayoutSGAllowedCoreAttributes |
libsbml.LayoutSGAllowedCoreElements = _libsbml.LayoutSGAllowedCoreElements |
libsbml.LayoutSGAllowedElements = _libsbml.LayoutSGAllowedElements |
libsbml.LayoutSGMetaIdRefMustBeIDREF = _libsbml.LayoutSGMetaIdRefMustBeIDREF |
libsbml.LayoutSGMetaIdRefMustReferenceObject = _libsbml.LayoutSGMetaIdRefMustReferenceObject |
libsbml.LayoutSGNoDuplicateReferences = _libsbml.LayoutSGNoDuplicateReferences |
libsbml.LayoutSGSpeciesMustRefSpecies = _libsbml.LayoutSGSpeciesMustRefSpecies |
libsbml.LayoutSGSpeciesSyntax = _libsbml.LayoutSGSpeciesSyntax |
libsbml.LayoutSIdSyntax = _libsbml.LayoutSIdSyntax |
libsbml.LayoutSRGAllowedAttributes = _libsbml.LayoutSRGAllowedAttributes |
libsbml.LayoutSRGAllowedCoreAttributes = _libsbml.LayoutSRGAllowedCoreAttributes |
libsbml.LayoutSRGAllowedCoreElements = _libsbml.LayoutSRGAllowedCoreElements |
libsbml.LayoutSRGAllowedElements = _libsbml.LayoutSRGAllowedElements |
libsbml.LayoutSRGMetaIdRefMustBeIDREF = _libsbml.LayoutSRGMetaIdRefMustBeIDREF |
libsbml.LayoutSRGMetaIdRefMustReferenceObject = _libsbml.LayoutSRGMetaIdRefMustReferenceObject |
libsbml.LayoutSRGNoDuplicateReferences = _libsbml.LayoutSRGNoDuplicateReferences |
libsbml.LayoutSRGRoleSyntax = _libsbml.LayoutSRGRoleSyntax |
libsbml.LayoutSRGSpeciesGlyphMustRefObject = _libsbml.LayoutSRGSpeciesGlyphMustRefObject |
libsbml.LayoutSRGSpeciesGlyphSyntax = _libsbml.LayoutSRGSpeciesGlyphSyntax |
libsbml.LayoutSRGSpeciesReferenceSyntax = _libsbml.LayoutSRGSpeciesReferenceSyntax |
libsbml.LayoutSRGSpeciesRefMustRefObject = _libsbml.LayoutSRGSpeciesRefMustRefObject |
libsbml.LayoutTGAllowedAttributes = _libsbml.LayoutTGAllowedAttributes |
libsbml.LayoutTGAllowedCoreAttributes = _libsbml.LayoutTGAllowedCoreAttributes |
libsbml.LayoutTGAllowedCoreElements = _libsbml.LayoutTGAllowedCoreElements |
libsbml.LayoutTGAllowedElements = _libsbml.LayoutTGAllowedElements |
libsbml.LayoutTGGraphicalObjectMustRefObject = _libsbml.LayoutTGGraphicalObjectMustRefObject |
libsbml.LayoutTGGraphicalObjectSyntax = _libsbml.LayoutTGGraphicalObjectSyntax |
libsbml.LayoutTGMetaIdRefMustBeIDREF = _libsbml.LayoutTGMetaIdRefMustBeIDREF |
libsbml.LayoutTGMetaIdRefMustReferenceObject = _libsbml.LayoutTGMetaIdRefMustReferenceObject |
libsbml.LayoutTGNoDuplicateReferences = _libsbml.LayoutTGNoDuplicateReferences |
libsbml.LayoutTGOriginOfTextMustRefObject = _libsbml.LayoutTGOriginOfTextMustRefObject |
libsbml.LayoutTGOriginOfTextSyntax = _libsbml.LayoutTGOriginOfTextSyntax |
libsbml.LayoutTGTextMustBeString = _libsbml.LayoutTGTextMustBeString |
libsbml.LayoutUnknownError = _libsbml.LayoutUnknownError |
libsbml.LayoutXsiTypeAllowedLocations = _libsbml.LayoutXsiTypeAllowedLocations |
libsbml.LayoutXsiTypeSyntax = _libsbml.LayoutXsiTypeSyntax |
libsbml.LevelPositiveInteger = _libsbml.LevelPositiveInteger |
libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND = _libsbml.LIBSBML_ANNOTATION_NAME_NOT_FOUND |
The existing annotation does not have a top-level element with the given name.
This error is typically returned in situations where the replaceTopLevelAnnotationElement function or the removeTopLevelAnnotationElement function is being used to replace or remove an annotation with a name that does not match the name of any top-level element that is already present in the existing annotation.
libsbml.LIBSBML_ANNOTATION_NS_NOT_FOUND = _libsbml.LIBSBML_ANNOTATION_NS_NOT_FOUND |
The existing annotation does not have a top-level element with the given namespace.
This error is typically returned in situations where the replaceTopLevelAnnotationElement function or the removeTopLevelAnnotationElement function is being used to replace or remove an annotation with a namespace that does not match the namespace of any top-level element that is already present in the existing annotation.
libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY = _libsbml.LIBSBML_CAT_GENERAL_CONSISTENCY |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can occur while validating general SBML constructs. With respect to the SBML specification, these concern failures in applying the validation rules numbered 2xxxx in the Level 2 Versions 2 and 3 specifications.
libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY = _libsbml.LIBSBML_CAT_IDENTIFIER_CONSISTENCY |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can occur while validating symbol identifiers in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 103xx in the Level 2 Versions 2 and 3 specifications.
libsbml.LIBSBML_CAT_INTERNAL = _libsbml.LIBSBML_CAT_INTERNAL |
Category code for errors in the XML layer.
This code has the following meaning: A problem involving the libSBML software itself or the underlying XML parser. This almost certainly indicates a software defect (i.e., bug) in libSBML. Please report instances of this to the libSBML developers.
libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY = _libsbml.LIBSBML_CAT_INTERNAL_CONSISTENCY |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can occur while validating libSBML's internal representation of SBML constructs. (These are tests performed by libSBML and do not have equivalent SBML validation rules.)
libsbml.LIBSBML_CAT_MATHML_CONSISTENCY = _libsbml.LIBSBML_CAT_MATHML_CONSISTENCY |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can occur while validating MathML formulas in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 102xx in the Level 2 Versions 2 and 3 specifications.
libsbml.LIBSBML_CAT_MODELING_PRACTICE = _libsbml.LIBSBML_CAT_MODELING_PRACTICE |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of warnings about recommended good practices involving SBML and computational modeling. (These are tests performed by libSBML and do not have equivalent SBML validation rules.)
libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL = _libsbml.LIBSBML_CAT_OVERDETERMINED_MODEL |
Category code for SBMLError diagnostics.
This code has the following meaning: Error in the system of equations in the model: the system is overdetermined, therefore violating a tenet of proper SBML. With respect to the SBML specification, this is validation rule #10601 in the SBML Level 2 Versions 2 and 3 specifications.
libsbml.LIBSBML_CAT_SBML = _libsbml.LIBSBML_CAT_SBML |
Category code for errors in the XML layer.
This code has the following meaning: General SBML error not falling into another category below.
libsbml.LIBSBML_CAT_SBML_L1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L1_COMPAT |
Category code for SBMLError diagnostics.
This code has the following meaning: General SBML error not falling into another category below.
This code has the following meaning: Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model from SBML Level 2 to SBML Level 1.
libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V1_COMPAT |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 1.
libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V2_COMPAT |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 2.
libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V3_COMPAT |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 3.
libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT = _libsbml.LIBSBML_CAT_SBML_L2V4_COMPAT |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 4.
libsbml.LIBSBML_CAT_SBML_L3V1_COMPAT = _libsbml.LIBSBML_CAT_SBML_L3V1_COMPAT |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 3 Version 1.
libsbml.LIBSBML_CAT_SBO_CONSISTENCY = _libsbml.LIBSBML_CAT_SBO_CONSISTENCY |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can occur while validating SBO identifiers in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 107xx in the Level 2 Versions 2 and 3 specifications.
libsbml.LIBSBML_CAT_SYSTEM = _libsbml.LIBSBML_CAT_SYSTEM |
Category code for errors in the XML layer.
This code has the following meaning: A problem reported by the operating system, such as an inability to read or write a file. This indicates something that is not a program error but is outside of the control of libSBML.
libsbml.LIBSBML_CAT_UNITS_CONSISTENCY = _libsbml.LIBSBML_CAT_UNITS_CONSISTENCY |
Category code for SBMLError diagnostics.
This code has the following meaning: Category of errors that can occur while validating the units of measurement on quantities in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 105xx in the Level 2 Versions 2 and 3 specifications.
libsbml.LIBSBML_CAT_XML = _libsbml.LIBSBML_CAT_XML |
Category code for errors in the XML layer.
This code has the following meaning: A problem in the XML content itself. This usually arises from malformed XML or the use of constructs not permitted in SBML.
libsbml.LIBSBML_CONV_CONVERSION_NOT_AVAILABLE = _libsbml.LIBSBML_CONV_CONVERSION_NOT_AVAILABLE |
One of the possible libSBML package operation return codes.
This code has the following meaning: conversion with the given properties is not yet available.
libsbml.LIBSBML_CONV_INVALID_SRC_DOCUMENT = _libsbml.LIBSBML_CONV_INVALID_SRC_DOCUMENT |
One of the possible libSBML package operation return codes.
This code has the following meaning: The document on which conversion is being requested is invalid and the requested conversion cannot be performed. This error is typically returned when a conversion routine has been given an invalid target document or the conversion requires a certain degree of validity that is not present in the document. To avoid this error use the SBMLDocument#checkConsistency() function to find and resolve errors before passing the document to a conversion method.
libsbml.LIBSBML_CONV_INVALID_TARGET_NAMESPACE = _libsbml.LIBSBML_CONV_INVALID_TARGET_NAMESPACE |
One of the possible libSBML package operation return codes.
This code has the following meaning: while attempting to convert the SBML document using SBMLLevelVersionConverter#convert() or related methods, the target namespace has been found to be invalid or unset. (The function SBMLNamespaces#isValidCombination() may be useful in detecting this situation and preventing the error.)
libsbml.LIBSBML_CONV_PKG_CONSIDERED_UNKNOWN = _libsbml.LIBSBML_CONV_PKG_CONSIDERED_UNKNOWN |
The package that is being stripped is not an enabled package but considered by libSBML to be an unrecognized package.
This error is typically returned when calling the StripPackage converter requesting that a package for which code is not available be stripped. Thus the containing document will not be altered as the elements and attributes for this package are stored as unknown package information and will be written out as such.
libsbml.LIBSBML_CONV_PKG_CONVERSION_NOT_AVAILABLE = _libsbml.LIBSBML_CONV_PKG_CONVERSION_NOT_AVAILABLE |
One of the possible libSBML package operation return codes.
This code has the following meaning: conversions involving SBML Level 3 packages are not available in the given libSBML method. This error is typically returned when calling a converter that does not have the functionality to deal with SBML packages. To avoid this error, ensure that the requested ConversionProperties specifies packages.
libsbml.LIBSBML_DOTTED_VERSION = _libsbml.LIBSBML_DOTTED_VERSION |
A version string of the form "1.2.3".
The numeric version as a string: version 1.2.3 becomes "10203".
libsbml.LIBSBML_DUPLICATE_ANNOTATION_NS = _libsbml.LIBSBML_DUPLICATE_ANNOTATION_NS |
There already exists a top level annotation with the same namespace as annoation being appended.
This error is typically returned in situations where the appendAnnotation function is being used to add an annotation that has a namespace that is already present in the existing annotation.
libsbml.LIBSBML_DUPLICATE_OBJECT_ID = _libsbml.LIBSBML_DUPLICATE_OBJECT_ID |
One of the possible libSBML operation return codes.
This code has the following meaning: There already exists an object with this identifier in the context where this operation is being attempted. This error is typically returned in situations where SBML object identifiers must be unique, such as attempting to add two species with the same identifier to a model.
libsbml.LIBSBML_INDEX_EXCEEDS_SIZE = _libsbml.LIBSBML_INDEX_EXCEEDS_SIZE |
One of the possible libSBML operation return codes.
This code has the following meaning: An index parameter exceeded the bounds of a data array or other collection used in the operation. This return value is typically returned by methods that take index numbers to refer to lists of objects, when the caller has provided an index that exceeds the bounds of the list. LibSBML provides methods for checking the size of list/sequence/collection structures, and callers should verify the sizes before calling methods that take index numbers.
libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE = _libsbml.LIBSBML_INVALID_ATTRIBUTE_VALUE |
One of the possible libSBML operation return codes.
This code has the following meaning: A value passed as an argument to the method is not of a type that is valid for the operation or kind of object involved. For example, this return code is used when a calling program attempts to set an SBML object identifier to a string whose syntax does not conform to the SBML identifier syntax.
libsbml.LIBSBML_INVALID_OBJECT = _libsbml.LIBSBML_INVALID_OBJECT |
One of the possible libSBML operation return codes.
This code has the following meaning: The object passed as an argument to the method is not of a type that is valid for the operation or kind of object involved. For example, handing an invalidly-constructed ASTNode to a method expecting an ASTNode will result in this error.
libsbml.LIBSBML_INVALID_XML_OPERATION = _libsbml.LIBSBML_INVALID_XML_OPERATION |
One of the possible libSBML operation return codes.
This code has the following meaning: The XML operation attempted is not valid for the object or context involved. This error is typically returned by the XML interface layer of libSBML, when a calling program attempts to construct or manipulate XML in an invalid way.
libsbml.LIBSBML_LEVEL_MISMATCH = _libsbml.LIBSBML_LEVEL_MISMATCH |
One of the possible libSBML operation return codes.
This code has the following meaning: The SBML Level associated with the object does not match the Level of the parent object. This error can happen when an SBML component such as a species or compartment object is created outside of a model and a calling program then attempts to add the object to a model that has a different SBML Level defined.
libsbml.LIBSBML_NAMESPACES_MISMATCH = _libsbml.LIBSBML_NAMESPACES_MISMATCH |
One of the possible libSBML operation return codes.
This code has the following meaning: The operation attempt could not be performed because the object(s) involved have mismatched XML namespaces for SBML Level/Versions. This typically means the properties of the SBMLNamespaces objects possessed by the SBML objects do not correspond in some way.
libsbml.LIBSBML_OPERATION_FAILED = _libsbml.LIBSBML_OPERATION_FAILED |
One of the possible libSBML operation return codes.
This code has the following meaning: The requested action could not be performed. This can occur in a variety of contexts, such as passing a null object as a parameter in a situation where it does not make sense to permit a null object.
libsbml.LIBSBML_OPERATION_SUCCESS = _libsbml.LIBSBML_OPERATION_SUCCESS |
One of the possible libSBML operation return codes.
This code has the following meaning: The operation was successful.
libsbml.LIBSBML_OVERRIDE_DISABLED = _libsbml.LIBSBML_OVERRIDE_DISABLED |
Severity override code for errors logged in the XML layer.
XMLErrorLog can be configured whether to log errors or not log them. This code has the following meaning: log errors in the error log, as normal.
libsbml.LIBSBML_OVERRIDE_DONT_LOG = _libsbml.LIBSBML_OVERRIDE_DONT_LOG |
Severity override code for errors logged in the XML layer.
XMLErrorLog can be configured whether to log errors or not log them. This code has the following meaning: disable all error logging.
libsbml.LIBSBML_OVERRIDE_WARNING = _libsbml.LIBSBML_OVERRIDE_WARNING |
Severity override code for errors logged in the XML layer.
XMLErrorLog can be configured whether to log errors or not log them. This code has the following meaning: log all errors as warnings instead of actual errors.
libsbml.LIBSBML_PKG_CONFLICT = _libsbml.LIBSBML_PKG_CONFLICT |
One of the possible libSBML package operation return codes.
This code has the following meaning: another SBML package extension for the same URI has already been registered. This error is typically returned when adding a SBML package extension to the SBMLExtensionRegistry. To avoid this error, ensure that SBML package extensions are only registered once.
libsbml.LIBSBML_PKG_CONFLICTED_VERSION = _libsbml.LIBSBML_PKG_CONFLICTED_VERSION |
One of the possible libSBML package operation return codes.
This code has the following meaning: another version of the required package extension has already been enabled in the target SBase object, or enabled in the model to/in which the target object to be added/contained. This error is typically returned when adding an object of some SBase derived class with the required package to other SBase derived object, or when enabling the required package in the target object. To avoid this error, the conflict of versions need to be avoided.
libsbml.LIBSBML_PKG_DISABLED = _libsbml.LIBSBML_PKG_DISABLED |
One of the possible libSBML package operation return codes.
This code has the following meaning: The required package extension is disabled. This error is typically returned when creating an object of SBase derived class with the required package, creating an object of SBMLNamespaces or its derived class with the required package, or invoking functions depending on the required package. To avoid this error, the library of the required package needs to be enabled.
libsbml.LIBSBML_PKG_UNKNOWN = _libsbml.LIBSBML_PKG_UNKNOWN |
One of the possible libSBML package operation return codes.
This code has the following meaning: the required package extension is unknown. This error is typically returned when creating an object of SBase derived class with the required package, creating an object of SBMLNamespaces or its derived class with the required package, or invoking functions depending on the required package. To avoid this error, the library of the required package needs to be linked.
libsbml.LIBSBML_PKG_UNKNOWN_VERSION = _libsbml.LIBSBML_PKG_UNKNOWN_VERSION |
One of the possible libSBML package operation return codes.
This code has the following meaning: The required version of the package extension is unknown. This error is typically returned when creating an object of SBase derived class with the required package, creating an object of SBMLNamespaces or its derived class with the required package, or invoking functions depending on the required package. This error may be avoided by updating the library of the required package to be linked.
libsbml.LIBSBML_PKG_VERSION_MISMATCH = _libsbml.LIBSBML_PKG_VERSION_MISMATCH |
One of the possible libSBML package operation return codes.
This code has the following meaning: the Version of the package extension within the SBML Level and version associated with the object does not match the Version of the parent object. This error can happen when an SBML component object is created outside of a model, and a calling program then attempts to add the object to a model that has a different SBML Level+Version+Package Version combination.
libsbml.LIBSBML_SEV_ERROR = _libsbml.LIBSBML_SEV_ERROR |
Severity code for errors in the XML layer.
This code has the following meaning: The error object represents a serious error. The application may continue running but it is unlikely to be able to continue processing the same XML file or data stream.
libsbml.LIBSBML_SEV_FATAL = _libsbml.LIBSBML_SEV_FATAL |
Severity code for errors in the XML layer.
This code has the following meaning: A serious error occurred, such as an out-of-memory condition, and the software should terminate immediately.
libsbml.LIBSBML_SEV_INFO = _libsbml.LIBSBML_SEV_INFO |
Severity code for errors in the XML layer.
This code has the following meaning: The error is actually informational and not necessarily a serious problem.
libsbml.LIBSBML_SEV_WARNING = _libsbml.LIBSBML_SEV_WARNING |
Severity code for errors in the XML layer.
This code has the following meaning: The error object represents a problem that is not serious enough to necessarily stop the problem, but applications should take note of the problem and evaluate what its implications may be.
libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE = _libsbml.LIBSBML_UNEXPECTED_ATTRIBUTE |
One of the possible libSBML operation return codes.
This code has the following meaning: The attribute that is the subject of this operation is not valid for the combination of SBML Level and Version for the underlying object. This can happen because libSBML strives to offer a uniform API for all SBML Levels and Versions, but some object attributes and elements are not defined for all SBML Levels and Versions. Calling programs are expected to be aware of which object structures they are working with, but when errors of this kind occur, they are reported using this return value.
libsbml.LIBSBML_VERSION = _libsbml.LIBSBML_VERSION |
The version as an integer: version 1.2.3 becomes 10203.
Since the major number comes first, the overall number will always increase when a new libSBML is released, making it easy to use less-than and greater-than comparisons when testing versions numbers.
libsbml.LIBSBML_VERSION_MISMATCH = _libsbml.LIBSBML_VERSION_MISMATCH |
One of the possible libSBML operation return codes.
This code has the following meaning: The SBML Version within the SBML Level associated with the object does not match the Version of the parent object. This error can happen when an SBML component such as a species or compartment object is created outside of a model and a calling program then attempts to add the object to a model that has a different SBML Level+Version combination.
libsbml.LIBSBML_VERSION_STRING = _libsbml.LIBSBML_VERSION_STRING |
libsbml.LibSBMLAdditionalCodesLowerBound = _libsbml.LibSBMLAdditionalCodesLowerBound |
libsbml.LocalParameterShadowsId = _libsbml.LocalParameterShadowsId |
libsbml.MathResultMustBeNumeric = _libsbml.MathResultMustBeNumeric |
libsbml.MetaIdNotValidAttribute = _libsbml.MetaIdNotValidAttribute |
libsbml.MissingAnnotationNamespace = _libsbml.MissingAnnotationNamespace |
libsbml.MissingEventAssignment = _libsbml.MissingEventAssignment |
libsbml.MissingModel = _libsbml.MissingModel |
libsbml.MissingOrInconsistentLevel = _libsbml.MissingOrInconsistentLevel |
libsbml.MissingOrInconsistentVersion = _libsbml.MissingOrInconsistentVersion |
libsbml.MissingSpeciesCompartment = _libsbml.MissingSpeciesCompartment |
libsbml.MissingTriggerInEvent = _libsbml.MissingTriggerInEvent |
libsbml.MissingXMLAttributeValue = _libsbml.MissingXMLAttributeValue |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.MissingXMLDecl = _libsbml.MissingXMLDecl |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.MissingXMLElements = _libsbml.MissingXMLElements |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.MissingXMLEncoding = _libsbml.MissingXMLEncoding |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.MissingXMLRequiredAttribute = _libsbml.MissingXMLRequiredAttribute |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.MODEL_QUALIFIER = _libsbml.MODEL_QUALIFIER |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.ModelSBOBranchChangedBeyondL2v2 = _libsbml.ModelSBOBranchChangedBeyondL2v2 |
libsbml.ModelSBOBranchChangedBeyondL2v3 = _libsbml.ModelSBOBranchChangedBeyondL2v3 |
libsbml.ModelSBOBranchChangedInL2v4 = _libsbml.ModelSBOBranchChangedInL2v4 |
libsbml.ModelSBOBranchChangedInL3v1 = _libsbml.ModelSBOBranchChangedInL3v1 |
libsbml.MultipleAnnotations = _libsbml.MultipleAnnotations |
libsbml.MultipleAssignmentOrRateRules = _libsbml.MultipleAssignmentOrRateRules |
libsbml.MultipleEventAssignmentsForId = _libsbml.MultipleEventAssignmentsForId |
libsbml.MultipleInitAssignments = _libsbml.MultipleInitAssignments |
libsbml.MultiplierNotValidAttribute = _libsbml.MultiplierNotValidAttribute |
libsbml.MultSpeciesSameTypeInCompartment = _libsbml.MultSpeciesSameTypeInCompartment |
libsbml.NameNotValidAttribute = _libsbml.NameNotValidAttribute |
libsbml.NeedCompartmentIfHaveSpecies = _libsbml.NeedCompartmentIfHaveSpecies |
libsbml.NoBodyInFunctionDef = _libsbml.NoBodyInFunctionDef |
libsbml.NoCompartmentOutsideInL3v1 = _libsbml.NoCompartmentOutsideInL3v1 |
libsbml.NoCompartmentTypeInL1 = _libsbml.NoCompartmentTypeInL1 |
libsbml.NoCompartmentTypeInL2v1 = _libsbml.NoCompartmentTypeInL2v1 |
libsbml.NoCompartmentTypeInL3v1 = _libsbml.NoCompartmentTypeInL3v1 |
libsbml.NoConcentrationInZeroD = _libsbml.NoConcentrationInZeroD |
libsbml.NoConstraintsInL1 = _libsbml.NoConstraintsInL1 |
libsbml.NoConstraintsInL2v1 = _libsbml.NoConstraintsInL2v1 |
libsbml.NoDelayedEventAssignmentInL2v1 = _libsbml.NoDelayedEventAssignmentInL2v1 |
libsbml.NoDelayedEventAssignmentInL2v2 = _libsbml.NoDelayedEventAssignmentInL2v2 |
libsbml.NoDelayedEventAssignmentInL2v3 = _libsbml.NoDelayedEventAssignmentInL2v3 |
libsbml.NoEventsInL1 = _libsbml.NoEventsInL1 |
libsbml.NoEventTimeUnitsInL2v3 = _libsbml.NoEventTimeUnitsInL2v3 |
libsbml.NoEventTimeUnitsInL2v4 = _libsbml.NoEventTimeUnitsInL2v4 |
libsbml.NoEventTimeUnitsInL3v1 = _libsbml.NoEventTimeUnitsInL3v1 |
libsbml.NoFancyStoichiometryMathInL1 = _libsbml.NoFancyStoichiometryMathInL1 |
libsbml.NoFunctionDefinitionsInL1 = _libsbml.NoFunctionDefinitionsInL1 |
libsbml.NoIdOnSpeciesReferenceInL2v1 = _libsbml.NoIdOnSpeciesReferenceInL2v1 |
libsbml.NoInitialAssignmentsInL1 = _libsbml.NoInitialAssignmentsInL1 |
libsbml.NoInitialAssignmentsInL2v1 = _libsbml.NoInitialAssignmentsInL2v1 |
libsbml.NoKineticLawSubstanceUnitsInL2v2 = _libsbml.NoKineticLawSubstanceUnitsInL2v2 |
libsbml.NoKineticLawSubstanceUnitsInL2v3 = _libsbml.NoKineticLawSubstanceUnitsInL2v3 |
libsbml.NoKineticLawSubstanceUnitsInL2v4 = _libsbml.NoKineticLawSubstanceUnitsInL2v4 |
libsbml.NoKineticLawSubstanceUnitsInL3v1 = _libsbml.NoKineticLawSubstanceUnitsInL3v1 |
libsbml.NoKineticLawTimeUnitsInL2v2 = _libsbml.NoKineticLawTimeUnitsInL2v2 |
libsbml.NoKineticLawTimeUnitsInL2v3 = _libsbml.NoKineticLawTimeUnitsInL2v3 |
libsbml.NoKineticLawTimeUnitsInL2v4 = _libsbml.NoKineticLawTimeUnitsInL2v4 |
libsbml.NoKineticLawTimeUnitsInL3v1 = _libsbml.NoKineticLawTimeUnitsInL3v1 |
libsbml.NonBoundarySpeciesAssignedAndUsed = _libsbml.NonBoundarySpeciesAssignedAndUsed |
libsbml.NonConstantLocalParameter = _libsbml.NonConstantLocalParameter |
libsbml.NonConstantSpeciesUsed = _libsbml.NonConstantSpeciesUsed |
libsbml.NoNon3DCompartmentsInL1 = _libsbml.NoNon3DCompartmentsInL1 |
libsbml.NoNonIntegerStoichiometryInL1 = _libsbml.NoNonIntegerStoichiometryInL1 |
libsbml.NonPersistentNotSupported = _libsbml.NonPersistentNotSupported |
libsbml.NoReactantsOrProducts = _libsbml.NoReactantsOrProducts |
libsbml.NoSBOTermsInL1 = _libsbml.NoSBOTermsInL1 |
libsbml.NoSBOTermsInL2v1 = _libsbml.NoSBOTermsInL2v1 |
libsbml.NoSpatialUnitsInZeroD = _libsbml.NoSpatialUnitsInZeroD |
libsbml.NoSpeciesSpatialSizeUnitsInL1 = _libsbml.NoSpeciesSpatialSizeUnitsInL1 |
libsbml.NoSpeciesSpatialSizeUnitsInL2v3 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v3 |
libsbml.NoSpeciesSpatialSizeUnitsInL2v4 = _libsbml.NoSpeciesSpatialSizeUnitsInL2v4 |
libsbml.NoSpeciesSpatialSizeUnitsInL3v1 = _libsbml.NoSpeciesSpatialSizeUnitsInL3v1 |
libsbml.NoSpeciesTypeInL2v1 = _libsbml.NoSpeciesTypeInL2v1 |
libsbml.NoSpeciesTypeInL3v1 = _libsbml.NoSpeciesTypeInL3v1 |
libsbml.NoSpeciesTypesInL1 = _libsbml.NoSpeciesTypesInL1 |
libsbml.NoStoichiometryMathInL3v1 = _libsbml.NoStoichiometryMathInL3v1 |
libsbml.NotesContainsDOCTYPE = _libsbml.NotesContainsDOCTYPE |
libsbml.NotesContainsXMLDecl = _libsbml.NotesContainsXMLDecl |
libsbml.NotesNotInXHTMLNamespace = _libsbml.NotesNotInXHTMLNamespace |
libsbml.NoTimeSymbolInFunctionDef = _libsbml.NoTimeSymbolInFunctionDef |
libsbml.NotSchemaConformant = _libsbml.NotSchemaConformant |
libsbml.NotUTF8 = _libsbml.NotUTF8 |
libsbml.NoUnitMultipliersOrOffsetsInL1 = _libsbml.NoUnitMultipliersOrOffsetsInL1 |
libsbml.NoUnitOffsetInL2v2 = _libsbml.NoUnitOffsetInL2v2 |
libsbml.NoUnitOffsetInL2v3 = _libsbml.NoUnitOffsetInL2v3 |
libsbml.NoUnitOffsetInL2v4 = _libsbml.NoUnitOffsetInL2v4 |
libsbml.NoUnitOffsetInL3v1 = _libsbml.NoUnitOffsetInL3v1 |
libsbml.NoUnitsOnCompartment = _libsbml.NoUnitsOnCompartment |
libsbml.NumericOpsNeedNumericArgs = _libsbml.NumericOpsNeedNumericArgs |
libsbml.OBJECTIVE_TYPE_MAXIMIZE = _libsbml.OBJECTIVE_TYPE_MAXIMIZE |
fbc One of the possible FluxBound operation types.
fbc One of the possible Objective types.
The FluxBound class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to to hold a single equality or inequality that represents the maximum or minimum value a reaction flux can obtain at steady state. One of the attributes of FluxBound is "operation". This code is one of the possible values of the "operation" attribute. The possible legal values are less than or equal to, greater than or equal to, or equal to. The additional two options "less than" and "greater than" are not legal values for the FluxBound "operation" attribute, but are provided to allow backwards compatibility with an earlier version of the draft specification. ObjectiveType_t
The Objective class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to represent the so-called objective function, which generally consist of a linear combination ofmodel variables (fluxes) and a sense (direction). The Objective class has a "type" attribute, and the present code is one of possible type values.
libsbml.OBJECTIVE_TYPE_MINIMIZE = _libsbml.OBJECTIVE_TYPE_MINIMIZE |
fbc One of the possible Objective types.
The Objective class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to represent the so-called objective function, which generally consist of a linear combination ofmodel variables (fluxes) and a sense (direction). The Objective class has a "type" attribute, and the present code is one of possible type values.
libsbml.OBJECTIVE_TYPE_UNKNOWN = _libsbml.OBJECTIVE_TYPE_UNKNOWN |
fbc One of the possible Objective types.
The Objective class is part of the SBML Level 3 Flux Balanced Constraints package. Its purpose is to represent the so-called objective function, which generally consist of a linear combination ofmodel variables (fluxes) and a sense (direction). The Objective class has a "type" attribute, and the present code is one of possible type values.
libsbml.ObseleteSBOTerm = _libsbml.ObseleteSBOTerm |
libsbml.OffsetNoLongerValid = _libsbml.OffsetNoLongerValid |
libsbml.OffsetNotValidAttribute = _libsbml.OffsetNotValidAttribute |
libsbml.OneDimensionalCompartmentUnits = _libsbml.OneDimensionalCompartmentUnits |
libsbml.OneListOfEventAssignmentsPerEvent = _libsbml.OneListOfEventAssignmentsPerEvent |
libsbml.OneListOfPerKineticLaw = _libsbml.OneListOfPerKineticLaw |
libsbml.OneListOfUnitsPerUnitDef = _libsbml.OneListOfUnitsPerUnitDef |
libsbml.OneMathElementPerConstraint = _libsbml.OneMathElementPerConstraint |
libsbml.OneMathElementPerFunc = _libsbml.OneMathElementPerFunc |
libsbml.OneMathElementPerInitialAssign = _libsbml.OneMathElementPerInitialAssign |
libsbml.OneMathElementPerRule = _libsbml.OneMathElementPerRule |
libsbml.OneMathPerDelay = _libsbml.OneMathPerDelay |
libsbml.OneMathPerEventAssignment = _libsbml.OneMathPerEventAssignment |
libsbml.OneMathPerKineticLaw = _libsbml.OneMathPerKineticLaw |
libsbml.OneMathPerPriority = _libsbml.OneMathPerPriority |
libsbml.OneMathPerTrigger = _libsbml.OneMathPerTrigger |
libsbml.OneMessageElementPerConstraint = _libsbml.OneMessageElementPerConstraint |
libsbml.OneOfEachListOf = _libsbml.OneOfEachListOf |
libsbml.OneSubElementPerReaction = _libsbml.OneSubElementPerReaction |
libsbml.OnlyCompartmentsInListOfCompartments = _libsbml.OnlyCompartmentsInListOfCompartments |
libsbml.OnlyConstraintsInListOfConstraints = _libsbml.OnlyConstraintsInListOfConstraints |
libsbml.OnlyEventAssignInListOfEventAssign = _libsbml.OnlyEventAssignInListOfEventAssign |
libsbml.OnlyEventsInListOfEvents = _libsbml.OnlyEventsInListOfEvents |
libsbml.OnlyFuncDefsInListOfFuncDefs = _libsbml.OnlyFuncDefsInListOfFuncDefs |
libsbml.OnlyInitAssignsInListOfInitAssigns = _libsbml.OnlyInitAssignsInListOfInitAssigns |
libsbml.OnlyLocalParamsInListOfLocalParams = _libsbml.OnlyLocalParamsInListOfLocalParams |
libsbml.OnlyOneDelayPerEvent = _libsbml.OnlyOneDelayPerEvent |
libsbml.OnlyOneNotesElementAllowed = _libsbml.OnlyOneNotesElementAllowed |
libsbml.OnlyOnePriorityPerEvent = _libsbml.OnlyOnePriorityPerEvent |
libsbml.OnlyParametersInListOfParameters = _libsbml.OnlyParametersInListOfParameters |
libsbml.OnlyReactionsInListOfReactions = _libsbml.OnlyReactionsInListOfReactions |
libsbml.OnlyRulesInListOfRules = _libsbml.OnlyRulesInListOfRules |
libsbml.OnlySpeciesInListOfSpecies = _libsbml.OnlySpeciesInListOfSpecies |
libsbml.OnlyUnitDefsInListOfUnitDefs = _libsbml.OnlyUnitDefsInListOfUnitDefs |
libsbml.OnlyUnitsInListOfUnits = _libsbml.OnlyUnitsInListOfUnits |
libsbml.OpsNeedCorrectNumberOfArgs = _libsbml.OpsNeedCorrectNumberOfArgs |
libsbml.OR_ASSOCIATION = _libsbml.OR_ASSOCIATION |
fbc One of the possible Association types.
The Association class is not part of the official SBML Level 3 Flux Balance Constraints specification, but is instead a proposed future development of the package. If adopted, it would be a child of a GeneAssociation that would describe a single 'and' or 'or' relationship between two or more genes or other associations.
The present code is one of the possible Association types for this proposed SBML Level 3 Flux Balance Constraints (“fbc”) package future development.
libsbml.OUTPUT_TRANSITION_EFFECT_ASSIGNMENT_LEVEL = _libsbml.OUTPUT_TRANSITION_EFFECT_ASSIGNMENT_LEVEL |
qual One of the possible OutputTransition "transitionEffect" attribute values.
The OutputTransition class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that is affected by a Transition. (In Petri net models, these are the output places of the transition.) OutputTransition has an attribute named "transitionEffect" that is used to describe how the QualitativeSpecies referenced by the Output is affected by the Transition.
The present code is one of the possible values of the "transitionEffect" attribute of an OutputTransition object.
libsbml.OUTPUT_TRANSITION_EFFECT_PRODUCTION = _libsbml.OUTPUT_TRANSITION_EFFECT_PRODUCTION |
OutputTransitionEffect_t.
qual One of the possible OutputTransition "transitionEffect" attribute values.
The OutputTransition class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that is affected by a Transition. (In Petri net models, these are the output places of the transition.) OutputTransition has an attribute named "transitionEffect" that is used to describe how the QualitativeSpecies referenced by the Output is affected by the Transition.
The present code is one of the possible values of the "transitionEffect" attribute of an OutputTransition object.
libsbml.OUTPUT_TRANSITION_EFFECT_UNKNOWN = _libsbml.OUTPUT_TRANSITION_EFFECT_UNKNOWN |
qual One of the possible OutputTransition "transitionEffect" attribute values.
The OutputTransition class is part of the SBML Level 3 Qualitative Models package. Its purpose is to represent a qualitative species that is affected by a Transition. (In Petri net models, these are the output places of the transition.) OutputTransition has an attribute named "transitionEffect" that is used to describe how the QualitativeSpecies referenced by the Output is affected by the Transition.
The present code is one of the possible values of the "transitionEffect" attribute of an OutputTransition object.
libsbml.OverdeterminedSystem = _libsbml.OverdeterminedSystem |
libsbml.PackageConversionNotSupported = _libsbml.PackageConversionNotSupported |
libsbml.PackageNSMustMatch = _libsbml.PackageNSMustMatch |
libsbml.PackageRequiredShouldBeFalse = _libsbml.PackageRequiredShouldBeFalse |
libsbml.ParameterShouldHaveUnits = _libsbml.ParameterShouldHaveUnits |
libsbml.ParameterUnits = _libsbml.ParameterUnits |
libsbml.PersistentNotBoolean = _libsbml.PersistentNotBoolean |
libsbml.PieceNeedsBoolean = _libsbml.PieceNeedsBoolean |
libsbml.PiecewiseNeedsConsistentTypes = _libsbml.PiecewiseNeedsConsistentTypes |
libsbml.PriorityLostFromL3 = _libsbml.PriorityLostFromL3 |
libsbml.PriorityUnitsNotDimensionless = _libsbml.PriorityUnitsNotDimensionless |
libsbml.QualAttributeRequiredMissing = _libsbml.QualAttributeRequiredMissing |
libsbml.QualAttributeRequiredMustBeBoolean = _libsbml.QualAttributeRequiredMustBeBoolean |
libsbml.QualCompartmentMustReferExisting = _libsbml.QualCompartmentMustReferExisting |
libsbml.QualConstantMustBeBool = _libsbml.QualConstantMustBeBool |
libsbml.QualConstantQSCannotBeOutput = _libsbml.QualConstantQSCannotBeOutput |
libsbml.QualDefaultTermAllowedAttributes = _libsbml.QualDefaultTermAllowedAttributes |
libsbml.QualDefaultTermAllowedCoreAttributes = _libsbml.QualDefaultTermAllowedCoreAttributes |
libsbml.QualDefaultTermAllowedElements = _libsbml.QualDefaultTermAllowedElements |
libsbml.QualDefaultTermResultMustBeInteger = _libsbml.QualDefaultTermResultMustBeInteger |
libsbml.QualDefaultTermResultMustBeNonNeg = _libsbml.QualDefaultTermResultMustBeNonNeg |
libsbml.QualDuplicateComponentId = _libsbml.QualDuplicateComponentId |
libsbml.QualElementNotInNs = _libsbml.QualElementNotInNs |
libsbml.QualEmptyLONotAllowed = _libsbml.QualEmptyLONotAllowed |
libsbml.QualFuncTermAllowedAttributes = _libsbml.QualFuncTermAllowedAttributes |
libsbml.QualFuncTermAllowedCoreAttributes = _libsbml.QualFuncTermAllowedCoreAttributes |
libsbml.QualFuncTermAllowedElements = _libsbml.QualFuncTermAllowedElements |
libsbml.QualFuncTermOnlyOneMath = _libsbml.QualFuncTermOnlyOneMath |
libsbml.QualFuncTermResultMustBeInteger = _libsbml.QualFuncTermResultMustBeInteger |
libsbml.QualFuncTermResultMustBeNonNeg = _libsbml.QualFuncTermResultMustBeNonNeg |
libsbml.QualFunctionTermBool = _libsbml.QualFunctionTermBool |
libsbml.QualInitalLevelNotNegative = _libsbml.QualInitalLevelNotNegative |
libsbml.QualInitialLevelCannotExceedMax = _libsbml.QualInitialLevelCannotExceedMax |
libsbml.QualInitialLevelMustBeInt = _libsbml.QualInitialLevelMustBeInt |
libsbml.QualInputAllowedAttributes = _libsbml.QualInputAllowedAttributes |
libsbml.QualInputAllowedCoreAttributes = _libsbml.QualInputAllowedCoreAttributes |
libsbml.QualInputAllowedElements = _libsbml.QualInputAllowedElements |
libsbml.QualInputConstantCannotBeConsumed = _libsbml.QualInputConstantCannotBeConsumed |
libsbml.QualInputNameMustBeString = _libsbml.QualInputNameMustBeString |
libsbml.QualInputQSMustBeExistingQS = _libsbml.QualInputQSMustBeExistingQS |
libsbml.QualInputSignMustBeSignEnum = _libsbml.QualInputSignMustBeSignEnum |
libsbml.QualInputThreshMustBeInteger = _libsbml.QualInputThreshMustBeInteger |
libsbml.QualInputThreshMustBeNonNegative = _libsbml.QualInputThreshMustBeNonNegative |
libsbml.QualInputTransEffectMustBeInputEffect = _libsbml.QualInputTransEffectMustBeInputEffect |
libsbml.QualLOQualSpeciesAllowedAttributes = _libsbml.QualLOQualSpeciesAllowedAttributes |
libsbml.QualLOQualSpeciesAllowedElements = _libsbml.QualLOQualSpeciesAllowedElements |
libsbml.QualLOTransitiondAllowedElements = _libsbml.QualLOTransitiondAllowedElements |
libsbml.QualLOTransitionsAllowedAttributes = _libsbml.QualLOTransitionsAllowedAttributes |
libsbml.QualMathCSymbolDisallowed = _libsbml.QualMathCSymbolDisallowed |
libsbml.QualMaxLevelMustBeInt = _libsbml.QualMaxLevelMustBeInt |
libsbml.QualMaxLevelNotNegative = _libsbml.QualMaxLevelNotNegative |
libsbml.QualNameMustBeString = _libsbml.QualNameMustBeString |
libsbml.QualNSUndeclared = _libsbml.QualNSUndeclared |
libsbml.QualOneListOfTransOrQS = _libsbml.QualOneListOfTransOrQS |
libsbml.QualOutputAllowedAttributes = _libsbml.QualOutputAllowedAttributes |
libsbml.QualOutputAllowedCoreAttributes = _libsbml.QualOutputAllowedCoreAttributes |
libsbml.QualOutputAllowedElements = _libsbml.QualOutputAllowedElements |
libsbml.QualOutputConstantMustBeFalse = _libsbml.QualOutputConstantMustBeFalse |
libsbml.QualOutputLevelMustBeInteger = _libsbml.QualOutputLevelMustBeInteger |
libsbml.QualOutputLevelMustBeNonNegative = _libsbml.QualOutputLevelMustBeNonNegative |
libsbml.QualOutputNameMustBeString = _libsbml.QualOutputNameMustBeString |
libsbml.QualOutputProductionMustHaveLevel = _libsbml.QualOutputProductionMustHaveLevel |
libsbml.QualOutputQSMustBeExistingQS = _libsbml.QualOutputQSMustBeExistingQS |
libsbml.QualOutputTransEffectMustBeOutput = _libsbml.QualOutputTransEffectMustBeOutput |
libsbml.QualQSAssignedOnlyOnce = _libsbml.QualQSAssignedOnlyOnce |
libsbml.QualQualSpeciesAllowedAttributes = _libsbml.QualQualSpeciesAllowedAttributes |
libsbml.QualQualSpeciesAllowedCoreAttributes = _libsbml.QualQualSpeciesAllowedCoreAttributes |
libsbml.QualQualSpeciesAllowedElements = _libsbml.QualQualSpeciesAllowedElements |
libsbml.QualRequiredTrueIfTransitions = _libsbml.QualRequiredTrueIfTransitions |
libsbml.QualTransitionAllowedAttributes = _libsbml.QualTransitionAllowedAttributes |
libsbml.QualTransitionAllowedCoreAttributes = _libsbml.QualTransitionAllowedCoreAttributes |
libsbml.QualTransitionAllowedElements = _libsbml.QualTransitionAllowedElements |
libsbml.QualTransitionEmptyLOElements = _libsbml.QualTransitionEmptyLOElements |
libsbml.QualTransitionLOElements = _libsbml.QualTransitionLOElements |
libsbml.QualTransitionLOFuncTermAttributes = _libsbml.QualTransitionLOFuncTermAttributes |
libsbml.QualTransitionLOFuncTermElements = _libsbml.QualTransitionLOFuncTermElements |
libsbml.QualTransitionLOFuncTermExceedMax = _libsbml.QualTransitionLOFuncTermExceedMax |
libsbml.QualTransitionLOFuncTermNegative = _libsbml.QualTransitionLOFuncTermNegative |
libsbml.QualTransitionLOInputAttributes = _libsbml.QualTransitionLOInputAttributes |
libsbml.QualTransitionLOInputElements = _libsbml.QualTransitionLOInputElements |
libsbml.QualTransitionLOOutputAttributes = _libsbml.QualTransitionLOOutputAttributes |
libsbml.QualTransitionLOOutputElements = _libsbml.QualTransitionLOOutputElements |
libsbml.QualTransitionNameMustBeString = _libsbml.QualTransitionNameMustBeString |
libsbml.QualUnknown = _libsbml.QualUnknown |
libsbml.RateRuleCompartmentMismatch = _libsbml.RateRuleCompartmentMismatch |
libsbml.RateRuleForConstantEntity = _libsbml.RateRuleForConstantEntity |
libsbml.RateRuleParameterMismatch = _libsbml.RateRuleParameterMismatch |
libsbml.RateRuleSpeciesMismatch = _libsbml.RateRuleSpeciesMismatch |
libsbml.RateRuleStoichiometryMismatch = _libsbml.RateRuleStoichiometryMismatch |
libsbml.RDFAboutTagNotMetaid = _libsbml.RDFAboutTagNotMetaid |
libsbml.RDFEmptyAboutTag = _libsbml.RDFEmptyAboutTag |
libsbml.RDFMissingAboutTag = _libsbml.RDFMissingAboutTag |
libsbml.RDFNotCompleteModelHistory = _libsbml.RDFNotCompleteModelHistory |
libsbml.RDFNotModelHistory = _libsbml.RDFNotModelHistory |
libsbml.RecursiveCompartmentContainment = _libsbml.RecursiveCompartmentContainment |
libsbml.RecursiveFunctionDefinition = _libsbml.RecursiveFunctionDefinition |
libsbml.RepeatedRule10304 = _libsbml.RepeatedRule10304 |
libsbml.RepeatedRule20611 = _libsbml.RepeatedRule20611 |
libsbml.RequiredPackagePresent = _libsbml.RequiredPackagePresent |
libsbml.RULE_TYPE_INVALID = _libsbml.RULE_TYPE_INVALID |
One of the possible SBML Rule object types.
libsbml.RULE_TYPE_RATE = _libsbml.RULE_TYPE_RATE |
One of the possible SBML Rule object types.
libsbml.RULE_TYPE_SCALAR = _libsbml.RULE_TYPE_SCALAR |
One of the possible SBML Rule object types.
libsbml.SBML_ALGEBRAIC_RULE = _libsbml.SBML_ALGEBRAIC_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_ASSIGNMENT_RULE = _libsbml.SBML_ASSIGNMENT_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_COMP_DELETION = _libsbml.SBML_COMP_DELETION |
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMP_EXTERNALMODELDEFINITION = _libsbml.SBML_COMP_EXTERNALMODELDEFINITION |
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMP_MODELDEFINITION = _libsbml.SBML_COMP_MODELDEFINITION |
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMP_PORT = _libsbml.SBML_COMP_PORT |
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMP_REPLACEDBY = _libsbml.SBML_COMP_REPLACEDBY |
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMP_REPLACEDELEMENT = _libsbml.SBML_COMP_REPLACEDELEMENT |
libsbml.SBML_COMP_SBASEREF = _libsbml.SBML_COMP_SBASEREF |
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMP_SUBMODEL = _libsbml.SBML_COMP_SUBMODEL |
long
comp One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Hierarchical Model Composition (“comp”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_COMPARTMENT = _libsbml.SBML_COMPARTMENT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_COMPARTMENT_TYPE = _libsbml.SBML_COMPARTMENT_TYPE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_COMPARTMENT_VOLUME_RULE = _libsbml.SBML_COMPARTMENT_VOLUME_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_CONSTRAINT = _libsbml.SBML_CONSTRAINT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_DELAY = _libsbml.SBML_DELAY |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_DOCUMENT = _libsbml.SBML_DOCUMENT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_EVENT = _libsbml.SBML_EVENT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_EVENT_ASSIGNMENT = _libsbml.SBML_EVENT_ASSIGNMENT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_FBC_ASSOCIATION = _libsbml.SBML_FBC_ASSOCIATION |
long
fbc One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Flux Balance Constraints (“fbc”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_FBC_FLUXBOUND = _libsbml.SBML_FBC_FLUXBOUND |
fbc One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Flux Balance Constraints (“fbc”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_FBC_FLUXOBJECTIVE = _libsbml.SBML_FBC_FLUXOBJECTIVE |
fbc One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Flux Balance Constraints (“fbc”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_FBC_GENEASSOCIATION = _libsbml.SBML_FBC_GENEASSOCIATION |
fbc One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Flux Balance Constraints (“fbc”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_FBC_OBJECTIVE = _libsbml.SBML_FBC_OBJECTIVE |
fbc One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Flux Balance Constraints (“fbc”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_FUNCTION_DEFINITION = _libsbml.SBML_FUNCTION_DEFINITION |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_INITIAL_ASSIGNMENT = _libsbml.SBML_INITIAL_ASSIGNMENT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_KINETIC_LAW = _libsbml.SBML_KINETIC_LAW |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_LAYOUT_BOUNDINGBOX = _libsbml.SBML_LAYOUT_BOUNDINGBOX |
long
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_COMPARTMENTGLYPH = _libsbml.SBML_LAYOUT_COMPARTMENTGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_CUBICBEZIER = _libsbml.SBML_LAYOUT_CUBICBEZIER |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_CURVE = _libsbml.SBML_LAYOUT_CURVE |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_DIMENSIONS = _libsbml.SBML_LAYOUT_DIMENSIONS |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_GENERALGLYPH = _libsbml.SBML_LAYOUT_GENERALGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_GRAPHICALOBJECT = _libsbml.SBML_LAYOUT_GRAPHICALOBJECT |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_LAYOUT = _libsbml.SBML_LAYOUT_LAYOUT |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_LINESEGMENT = _libsbml.SBML_LAYOUT_LINESEGMENT |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_POINT = _libsbml.SBML_LAYOUT_POINT |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_REACTIONGLYPH = _libsbml.SBML_LAYOUT_REACTIONGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_REFERENCEGLYPH = _libsbml.SBML_LAYOUT_REFERENCEGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_SPECIESGLYPH = _libsbml.SBML_LAYOUT_SPECIESGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_SPECIESREFERENCEGLYPH = _libsbml.SBML_LAYOUT_SPECIESREFERENCEGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LAYOUT_TEXTGLYPH = _libsbml.SBML_LAYOUT_TEXTGLYPH |
layout One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Layout (“layout”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_LIST_OF = _libsbml.SBML_LIST_OF |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_LOCAL_PARAMETER = _libsbml.SBML_LOCAL_PARAMETER |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_MODEL = _libsbml.SBML_MODEL |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_MODIFIER_SPECIES_REFERENCE = _libsbml.SBML_MODIFIER_SPECIES_REFERENCE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_PARAMETER = _libsbml.SBML_PARAMETER |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_PARAMETER_RULE = _libsbml.SBML_PARAMETER_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_PRIORITY = _libsbml.SBML_PRIORITY |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_QUAL_DEFAULT_TERM = _libsbml.SBML_QUAL_DEFAULT_TERM |
qual One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Qualitative Models (“qual”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_QUAL_FUNCTION_TERM = _libsbml.SBML_QUAL_FUNCTION_TERM |
qual One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Qualitative Models (“qual”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_QUAL_INPUT = _libsbml.SBML_QUAL_INPUT |
qual One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Qualitative Models (“qual”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_QUAL_OUTPUT = _libsbml.SBML_QUAL_OUTPUT |
qual One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Qualitative Models (“qual”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_QUAL_QUALITATIVE_SPECIES = _libsbml.SBML_QUAL_QUALITATIVE_SPECIES |
long
qual One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Qualitative Models (“qual”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_QUAL_TRANSITION = _libsbml.SBML_QUAL_TRANSITION |
qual One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
Each libSBML extension for SBML Level 3 packages adds its own type codes to objects. The present type code belongs to libSBML's extension to support the SBML Level 3 Qualitative Models (“qual”) package. It is used to identify the type of SBML component to which a given object corresponds.
libsbml.SBML_RATE_RULE = _libsbml.SBML_RATE_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_REACTION = _libsbml.SBML_REACTION |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_RULE = _libsbml.SBML_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_SPECIES = _libsbml.SBML_SPECIES |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_SPECIES_CONCENTRATION_RULE = _libsbml.SBML_SPECIES_CONCENTRATION_RULE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_SPECIES_REFERENCE = _libsbml.SBML_SPECIES_REFERENCE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_SPECIES_TYPE = _libsbml.SBML_SPECIES_TYPE |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_STOICHIOMETRY_MATH = _libsbml.SBML_STOICHIOMETRY_MATH |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_TRIGGER = _libsbml.SBML_TRIGGER |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_UNIT = _libsbml.SBML_UNIT |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_UNIT_DEFINITION = _libsbml.SBML_UNIT_DEFINITION |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBML_UNKNOWN = _libsbml.SBML_UNKNOWN |
One of the possible SBML component type codes.
LibSBML attaches an identifying code to every kind of SBML object. These are known as SBML type codes. In other languages, the set of type codes is stored in an enumeration; in the Java language interface for libSBML, the type codes are defined as static integer constants in the interface class libsbml. The names of the type codes all begin with the characters SBML_
.
libsbml.SBMLCodesUpperBound = _libsbml.SBMLCodesUpperBound |
libsbml.SBMLNamespaceInAnnotation = _libsbml.SBMLNamespaceInAnnotation |
libsbml.SBOTermNotUniversalInL2v2 = _libsbml.SBOTermNotUniversalInL2v2 |
libsbml.SBOTermNotValidAttributeBeforeL2V2 = _libsbml.SBOTermNotValidAttributeBeforeL2V2 |
libsbml.SBOTermNotValidAttributeBeforeL2V3 = _libsbml.SBOTermNotValidAttributeBeforeL2V3 |
libsbml.SpatialSizeUnitsNotValidAttribute = _libsbml.SpatialSizeUnitsNotValidAttribute |
libsbml.SpatialSizeUnitsRemoved = _libsbml.SpatialSizeUnitsRemoved |
libsbml.SpatialUnitsInOneD = _libsbml.SpatialUnitsInOneD |
libsbml.SpatialUnitsInThreeD = _libsbml.SpatialUnitsInThreeD |
libsbml.SpatialUnitsInTwoD = _libsbml.SpatialUnitsInTwoD |
libsbml.SPECIES_ROLE_ACTIVATOR = _libsbml.SPECIES_ROLE_ACTIVATOR |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_INHIBITOR = _libsbml.SPECIES_ROLE_INHIBITOR |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_MODIFIER = _libsbml.SPECIES_ROLE_MODIFIER |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_PRODUCT = _libsbml.SPECIES_ROLE_PRODUCT |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_SIDEPRODUCT = _libsbml.SPECIES_ROLE_SIDEPRODUCT |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_SIDESUBSTRATE = _libsbml.SPECIES_ROLE_SIDESUBSTRATE |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_SUBSTRATE = _libsbml.SPECIES_ROLE_SUBSTRATE |
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SPECIES_ROLE_UNDEFINED = _libsbml.SPECIES_ROLE_UNDEFINED |
SpeciesReferenceRole_t.
layout One of the possible roles of a SpeciesReferenceGlyph.
SpeciesReferenceGlyphs include an attribute to describe the role of a given SpeciesReference in a model diagram. The present code is one of the possible values for this role attribute.
libsbml.SpeciesCompartmentRequiredInL1 = _libsbml.SpeciesCompartmentRequiredInL1 |
libsbml.SpeciesInvalidExtentUnits = _libsbml.SpeciesInvalidExtentUnits |
libsbml.SpeciesShouldHaveValue = _libsbml.SpeciesShouldHaveValue |
libsbml.SpeciesTypeNotValidAttribute = _libsbml.SpeciesTypeNotValidAttribute |
libsbml.SpeciesTypeNotValidComponent = _libsbml.SpeciesTypeNotValidComponent |
libsbml.StoichiometryMathNotValidComponent = _libsbml.StoichiometryMathNotValidComponent |
libsbml.StoichiometryMathNotYetSupported = _libsbml.StoichiometryMathNotYetSupported |
libsbml.StrictSBORequiredInL2v2 = _libsbml.StrictSBORequiredInL2v2 |
libsbml.StrictSBORequiredInL2v3 = _libsbml.StrictSBORequiredInL2v3 |
libsbml.StrictUnitsRequiredInL1 = _libsbml.StrictUnitsRequiredInL1 |
libsbml.StrictUnitsRequiredInL2v1 = _libsbml.StrictUnitsRequiredInL2v1 |
libsbml.StrictUnitsRequiredInL2v2 = _libsbml.StrictUnitsRequiredInL2v2 |
libsbml.StrictUnitsRequiredInL2v3 = _libsbml.StrictUnitsRequiredInL2v3 |
libsbml.SubstanceUnitsOnSpecies = _libsbml.SubstanceUnitsOnSpecies |
libsbml.SubsUnitsAllowedInKL = _libsbml.SubsUnitsAllowedInKL |
libsbml.SubsUnitsNoLongerValid = _libsbml.SubsUnitsNoLongerValid |
libsbml.ThreeDimensionalCompartmentUnits = _libsbml.ThreeDimensionalCompartmentUnits |
libsbml.TimeUnitsAllowedInKL = _libsbml.TimeUnitsAllowedInKL |
libsbml.TimeUnitsEvent = _libsbml.TimeUnitsEvent |
libsbml.TimeUnitsNoLongerValid = _libsbml.TimeUnitsNoLongerValid |
libsbml.TimeUnitsRemoved = _libsbml.TimeUnitsRemoved |
libsbml.TriggerMathNotBoolean = _libsbml.TriggerMathNotBoolean |
libsbml.TwoDimensionalCompartmentUnits = _libsbml.TwoDimensionalCompartmentUnits |
libsbml.UnclosedXMLToken = _libsbml.UnclosedXMLToken |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.UndeclaredExtentUnitsL3 = _libsbml.UndeclaredExtentUnitsL3 |
libsbml.UndeclaredObjectUnitsL3 = _libsbml.UndeclaredObjectUnitsL3 |
libsbml.UndeclaredSpeciesInStoichMath = _libsbml.UndeclaredSpeciesInStoichMath |
libsbml.UndeclaredSpeciesRef = _libsbml.UndeclaredSpeciesRef |
libsbml.UndeclaredTimeUnitsL3 = _libsbml.UndeclaredTimeUnitsL3 |
libsbml.UndeclaredUnits = _libsbml.UndeclaredUnits |
libsbml.UndefinedOutsideCompartment = _libsbml.UndefinedOutsideCompartment |
libsbml.UndefinedXMLEntity = _libsbml.UndefinedXMLEntity |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.UninterpretableXMLContent = _libsbml.UninterpretableXMLContent |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.UNIT_KIND_AMPERE = _libsbml.UNIT_KIND_AMPERE |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_AVOGADRO = _libsbml.UNIT_KIND_AVOGADRO |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_BECQUEREL = _libsbml.UNIT_KIND_BECQUEREL |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_CANDELA = _libsbml.UNIT_KIND_CANDELA |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_CELSIUS = _libsbml.UNIT_KIND_CELSIUS |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_COULOMB = _libsbml.UNIT_KIND_COULOMB |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_DIMENSIONLESS = _libsbml.UNIT_KIND_DIMENSIONLESS |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_FARAD = _libsbml.UNIT_KIND_FARAD |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_GRAM = _libsbml.UNIT_KIND_GRAM |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_GRAY = _libsbml.UNIT_KIND_GRAY |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_HENRY = _libsbml.UNIT_KIND_HENRY |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_HERTZ = _libsbml.UNIT_KIND_HERTZ |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_INVALID = _libsbml.UNIT_KIND_INVALID |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_ITEM = _libsbml.UNIT_KIND_ITEM |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_JOULE = _libsbml.UNIT_KIND_JOULE |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_KATAL = _libsbml.UNIT_KIND_KATAL |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_KELVIN = _libsbml.UNIT_KIND_KELVIN |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_KILOGRAM = _libsbml.UNIT_KIND_KILOGRAM |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_LITER = _libsbml.UNIT_KIND_LITER |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_LITRE = _libsbml.UNIT_KIND_LITRE |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_LUMEN = _libsbml.UNIT_KIND_LUMEN |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_LUX = _libsbml.UNIT_KIND_LUX |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_METER = _libsbml.UNIT_KIND_METER |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_METRE = _libsbml.UNIT_KIND_METRE |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_MOLE = _libsbml.UNIT_KIND_MOLE |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_NEWTON = _libsbml.UNIT_KIND_NEWTON |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_OHM = _libsbml.UNIT_KIND_OHM |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_PASCAL = _libsbml.UNIT_KIND_PASCAL |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_RADIAN = _libsbml.UNIT_KIND_RADIAN |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_SECOND = _libsbml.UNIT_KIND_SECOND |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_SIEMENS = _libsbml.UNIT_KIND_SIEMENS |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_SIEVERT = _libsbml.UNIT_KIND_SIEVERT |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_STERADIAN = _libsbml.UNIT_KIND_STERADIAN |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_TESLA = _libsbml.UNIT_KIND_TESLA |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_VOLT = _libsbml.UNIT_KIND_VOLT |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_WATT = _libsbml.UNIT_KIND_WATT |
One of the possible predefined SBML units.
libsbml.UNIT_KIND_WEBER = _libsbml.UNIT_KIND_WEBER |
One of the possible predefined SBML units.
libsbml.UnitsNotValidAttribute = _libsbml.UnitsNotValidAttribute |
libsbml.UNKNOWN_ASSOCIATION = _libsbml.UNKNOWN_ASSOCIATION |
fbc One of the possible Association types.
The Association class is not part of the official SBML Level 3 Flux Balance Constraints specification, but is instead a proposed future development of the package. If adopted, it would be a child of a GeneAssociation that would describe a single 'and' or 'or' relationship between two or more genes or other associations.
The present code is one of the possible Association types for this proposed SBML Level 3 Flux Balance Constraints (“fbc”) package future development.
libsbml.UNKNOWN_QUALIFIER = _libsbml.UNKNOWN_QUALIFIER |
One of the possible MIRIAM annotation types used by CVTerm.
libsbml.UnknownCoreAttribute = _libsbml.UnknownCoreAttribute |
Encountered an unknow attribute in the core SBML Level 3 namespace.
libsbml.UnknownError = _libsbml.UnknownError |
libsbml.UnknownPackageAttribute = _libsbml.UnknownPackageAttribute |
Encountered an unknown attribute in an SBML Level 3 package namespace.
libsbml.UnrecognisedSBOTerm = _libsbml.UnrecognisedSBOTerm |
libsbml.UnrecognizedElement = _libsbml.UnrecognizedElement |
libsbml.UnrecognizedXMLElement = _libsbml.UnrecognizedXMLElement |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.UnrecognizedXMLParserCode = _libsbml.UnrecognizedXMLParserCode |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.UnrequiredPackagePresent = _libsbml.UnrequiredPackagePresent |
libsbml.UpperUnitBound = _libsbml.UpperUnitBound |
libsbml.ValuesFromTriggerTimeNeedDelay = _libsbml.ValuesFromTriggerTimeNeedDelay |
libsbml.VariableNotValidAttribute = _libsbml.VariableNotValidAttribute |
libsbml.VersionPositiveInteger = _libsbml.VersionPositiveInteger |
libsbml.VolumeLitreDefExponentNotOne = _libsbml.VolumeLitreDefExponentNotOne |
libsbml.VolumeMetreDefExponentNot3 = _libsbml.VolumeMetreDefExponentNot3 |
libsbml.XMLAttributeTypeMismatch = _libsbml.XMLAttributeTypeMismatch |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLBadColon = _libsbml.XMLBadColon |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLBadNumber = _libsbml.XMLBadNumber |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLBadUTF8Content = _libsbml.XMLBadUTF8Content |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLContentEmpty = _libsbml.XMLContentEmpty |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLEmptyValueNotPermitted = _libsbml.XMLEmptyValueNotPermitted |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLErrorCodesUpperBound = _libsbml.XMLErrorCodesUpperBound |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLExpectedQuotedString = _libsbml.XMLExpectedQuotedString |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLFileOperationError = _libsbml.XMLFileOperationError |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLFileUnreadable = _libsbml.XMLFileUnreadable |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLFileUnwritable = _libsbml.XMLFileUnwritable |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLNetworkAccessError = _libsbml.XMLNetworkAccessError |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLOutOfMemory = _libsbml.XMLOutOfMemory |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLTagMismatch = _libsbml.XMLTagMismatch |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLTranscoderError = _libsbml.XMLTranscoderError |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLUnexpectedEOF = _libsbml.XMLUnexpectedEOF |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.XMLUnknownError = _libsbml.XMLUnknownError |
A value in the enumeration of all the error and warning codes returned by the XML layer in libSBML.
Please consult the documentation for XMLError for an explanation of the meaning of this particular error code.
libsbml.ZeroDCompartmentContainment = _libsbml.ZeroDCompartmentContainment |
libsbml.ZeroDimensionalCompartmentConst = _libsbml.ZeroDimensionalCompartmentConst |
libsbml.ZeroDimensionalCompartmentSize = _libsbml.ZeroDimensionalCompartmentSize |