Interface | Description |
---|---|
BrefWriter |
Interface
BrefWrites writes phased, non-missing genotypes to a
binary reference format (bref) file. |
Class | Description |
---|---|
AsIsBref3Writer |
Class
AsIsBref3Writer writes VCF data with phased, non-missing
genotypes to a binary reference format v3 (bref) file. |
Bref3 |
Class
Bref3 converts files in VCF format into
bref version 3 format. |
Bref3It |
Class
Bref3It represents an iterator whose next() which
returns records from a bref version 3 file. |
Bref3Reader |
Class
Bref3Reader contains methods for reading a bref 3
(binary reference format) file. |
BrefBlock |
Class
BrefBlock represents starting chromosome coordinates and
file offset for the start of a binary reference format (bref) data block. |
CompressBref3Writer |
Class
CompressBref3Writer writes phased, non-missing genotypes
to a binary reference format v3 (bref) file. |
SeqCoder3 |
Class
SeqCoder3 compresses a sequence of allele-coded
RefGTRec objects. |
UnBref3 |
Class
UnBref3 converts files in bref version 3 format
into VCF format. |