Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_INIT_CAPACITY |
500 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final char |
colon |
58 |
public static final char |
comma |
44 |
public static final int |
giga |
1000000000 |
public static final char |
hyphen |
45 |
public static final int |
mega |
1000000 |
public static final char |
MISSING_DATA_CHAR |
46 |
public static final java.lang.String |
MISSING_DATA_STRING |
"." |
public static final char |
phasedSep |
124 |
public static final char |
semicolon |
59 |
public static final char |
tab |
9 |
public static final char |
unphasedSep |
47 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_INIT_CAPACITY |
10 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_BUFFER_SIZE |
4194304 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final byte |
ALLELE_CODED |
1 |
public static final int |
END_OF_DATA |
0 |
public static final long |
END_OF_INDEX |
-999999999999999L |
public static final int |
MAGIC_NUMBER_V3 |
2055763188 |
public final int |
MAX_SAMPLES |
536870911 |
public static final byte |
SEQ_CODED |
0 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final float |
COMPRESS_FREQ_THRESHOLD |
0.9950000047683716f |
public static final int |
MAX_NALLELES |
255 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_INIT_CAPACITY |
16 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
COMMAND |
"java -jar beagle.28Sep18.793.jar" |
public static final java.lang.String |
COPYRIGHT |
"Copyright (C) 2014-2018 Brian L. Browning" |
public static final java.lang.String |
PROGRAM |
"beagle.28Sep18.793.jar" |
public static final java.lang.String |
VERSION |
"(version 5.0)" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
GT_FORMAT |
"GT" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
MAX_EM_BUFFER_SIZE |
1000 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
HEADER_PREFIX |
"#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
MAX_EM_BUFFER_SIZE |
1000 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final char |
DELIMITER |
61 |
public static final java.lang.String |
PREFIX |
"##" |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final int |
DEFAULT_INIT_SIZE |
50 |
Modifier and Type | Constant Field | Value |
---|---|---|
public static final java.lang.String |
GL_FORMAT |
"GL" |
public static final java.lang.String |
PL_FORMAT |
"PL" |