Class | Description |
---|---|
EstPhase |
Class
EstPhase stores haplotype pairs, missing genotypes,
and unphased, nonmissing heteroygote genotypes for a list of samples. |
PhaseBaum1 |
Class
PhaseBaum1 implements the forward and backward algorithms
for a haploid Li and Stephens hidden Markov model. |
PhaseData |
Class
PhaseData contains the input data for phasing
genotypes. |
PhaseIbs |
Class
PhaseIbs identifies haplotypes that share a long
IBS segment with a specified haplotype. |
PhaseLS |
Class
PhaseLS estimated genotypes phase using
a haploid Li and Stephens hidden Markov model. |
PhaseStates |
Class
PhaseStates identifies a rolling window of reference
haplotypes for a target sample. |