Interface | Description |
---|---|
GenotypeValues |
Interface
GenotypeValues represents a value for each
possible genotype for each sample at each marker. |
Class | Description |
---|---|
CurrentData |
Class
CurrentData represents input data for the current marker
window. |
Main |
Class
Main is the entry class for the Beagle program. |
MainHelper |
Class
MainHelper is an auxiliary class with methods called by
the main.Main class. |
Par |
Class
Parameters represents the parameters for a Beagle analysis. |
Pedigree |
Class
Pedigree stores parent-offspring relationships
in a list of samples. |
RunStats |
Class
RunStats contains methods for storing and printing
statistics describing a Beagle analysis. |
WindowWriter |
Class
WindowWriter writes VCF and IBD output data. |