ProteoWizard
cv.hpp
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1 //
2 // $Id: cv.hpp 6478 2014-07-08 20:01:38Z chambm $
3 //
4 //
5 // Darren Kessner <darren@proteowizard.org>
6 //
7 // Copyright 2007 Spielberg Family Center for Applied Proteomics
8 // Cedars-Sinai Medical Center, Los Angeles, California 90048
9 //
10 // Licensed under the Apache License, Version 2.0 (the "License");
11 // you may not use this file except in compliance with the License.
12 // You may obtain a copy of the License at
13 //
14 // http://www.apache.org/licenses/LICENSE-2.0
15 //
16 // Unless required by applicable law or agreed to in writing, software
17 // distributed under the License is distributed on an "AS IS" BASIS,
18 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19 // See the License for the specific language governing permissions and
20 // limitations under the License.
21 //
22 // This file was generated by cvgen.
23 //
24 // Do not edit this file! Your changes will be lost next time cvgen is run -
25 // see pwiz/scripts/misc/update_cv.bat for info on how that works.
26 // Instead, edit cvgen.cpp itself, or the cv.inl include file if adding static
27 // code or data.
28 //
29 
30 
31 #ifndef _CV_HPP_
32 #define _CV_HPP_
33 
34 
35 #include <string>
36 #include <vector>
37 #include <map>
39 
40 
41 // [psi-ms.obo]
42 #define _PSI_MS_OBO_
43 // format-version: 1.2
44 // data-version: 3.65.0
45 // date: 02:07:2014 08:55
46 // saved-by: Gerhard Mayer
47 // auto-generated-by: OBO-Edit 2.3
48 // import: http://pato.googlecode.com/svn/trunk/quality.obo
49 // import: http://unit-ontology.googlecode.com/svn/trunk/unit.obo
50 // default-namespace: MS
51 // namespace-id-rule: * MS:$sequence(7,0,9999999)$
52 // remark: namespace: MS
53 // remark: version: 3.65.0
54 // remark: release date: 2014-07-02
55 // remark: coverage: Mass spectrometer output files and spectra interpretation
56 // remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
57 // remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
58 // remark: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
59 // remark: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
60 // remark: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
61 // remark: creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>
62 // remark: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
63 // remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
64 // remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
65 // remark: This work is licensed under the Creative Commons Attribution 3.0 Unported License.
66 // remark: To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
67 // ontology: pato
68 // ontology: uo
69 //
70 // [unimod.obo]
71 #define _UNIMOD_OBO_
72 // format-version: 1.2
73 // date: 2014:06:04 16:11
74 //
75 // [unit.obo]
76 #define _UNIT_OBO_
77 // format-version: 1.2
78 // date: 12:10:2011 11:21
79 // saved-by: George Gkoutos
80 // auto-generated-by: OBO-Edit 2.1-beta13
81 // subsetdef: unit_group_slim "unit group slim"
82 // subsetdef: unit_slim "unit slim"
83 // default-namespace: unit.ontology
84 // namespace-id-rule: * UO:$sequence(7,0,9999999)$
85 // import: http://purl.obolibrary.org/obo/pato.obo
86 //
87 
88 
89 namespace pwiz {
90 namespace cv {
91 
92 
93 /// enumeration of controlled vocabulary (CV) terms, generated from OBO file(s)
94 enum PWIZ_API_DECL CVID
95 {
97 
98  /// Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies.
100 
101  /// sample number: A reference number relevant to the sample under study.
102  MS_sample_number = 1000001,
103 
104  /// sample name: A reference string relevant to the sample under study.
106 
107  /// sample state: The chemical phase of a pure sample, or the state of a mixed sample.
108  MS_sample_state = 1000003,
109 
110  /// sample mass: Total mass of sample used.
111  MS_sample_mass = 1000004,
112 
113  /// sample volume: Total volume of solution used.
114  MS_sample_volume = 1000005,
115 
116  /// sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
118 
119  /// inlet type: The nature of the sample inlet.
120  MS_inlet_type = 1000007,
121 
122  /// ionization type: The method by which gas phase ions are generated from the sample.
124 
125  /// ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
127 
128  /// analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted.
130 
131  /// mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height.
133 
134  /// resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate.
136 
137  /// resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z.
139 
140  /// accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
141  MS_accuracy = 1000014,
142 
143  /// scan rate: Rate in Th/sec for scanning analyzers.
144  MS_scan_rate = 1000015,
145 
146  /// scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
148 
149  /// Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum.
150  MS_Scan_Function = 1000017,
151 
152  /// scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low).
153  MS_scan_direction = 1000018,
154 
155  /// scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
156  MS_scan_law = 1000019,
157 
158  /// scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment.
160 
161  /// reflectron state: Status of the reflectron, turned on or off.
163 
164  /// TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer.
166 
167  /// isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion.
169 
170  /// final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
172 
173  /// magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
175 
176  /// B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
178 
179  /// detector type: Type of detector used in the mass spectrometer.
180  MS_detector_type = 1000026,
181 
182  /// detector acquisition mode: Method by which detector signal is acquired by the data system.
184 
185  /// detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height.
187 
188  /// sampling frequency: The rate of signal sampling (measurement) with respect to time.
190 
191  /// vendor: Name of instrument vendor.
193 
194  /// instrument model: Instrument model name not including the vendor's name.
196 
197  /// customization: Free text description of a single customization made to the instrument; for several modifications, use several entries.
198  MS_customization = 1000032,
199 
200  /// deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.
201  MS_deisotoping = 1000033,
202 
203  /// charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions.
205 
206  /// peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data.
207  MS_peak_picking = 1000035,
208 
209  /// scan mode: OBSOLETE.
211 
212  /// polarity: Terms to describe the polarity setting of the instrument.
214 
215  /// minute: Acquisition time in minutes.
217 
218  /// second: Acquisition time in seconds.
220 
221  /// m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
222  MS_m_z = 1000040,
223 
224  /// mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
226 
227  /// Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
229 
230  /// thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
232 
233  /// charge state: The charge state of the ion, single or multiple and positive or negatively charged.
234  MS_charge_state = 1000041,
235 
236  /// z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
238 
239  /// peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
240  MS_peak_intensity = 1000042,
241 
242  /// intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors.
243  MS_intensity_unit = 1000043,
244 
245  /// dissociation method: Fragmentation method used for dissociation or fragmentation.
247 
248  /// collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion.
250 
251  /// energy unit: Energy units are represented in either eV or Joules.
253 
254  /// emulsion: State if the sample is in emulsion form.
255  MS_emulsion = 1000047,
256 
257  /// gaseous sample state: State if the sample is in gaseous form.
259 
260  /// liquid sample state: State if the sample is in liquid form.
262 
263  /// solid sample state: State if the sample is in solid form.
265 
266  /// solution: State if the sample is in solution form.
267  MS_solution = 1000051,
268 
269  /// suspension: State if the sample is in suspension form.
270  MS_suspension = 1000052,
271 
272  /// sample batch: Sample batch lot identifier.
273  MS_sample_batch = 1000053,
274 
275  /// chromatography: Chromatographic conditions used to obtain the sample.
277 
278  /// continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
280 
281  /// CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
283 
284  /// direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe.
285  MS_direct_inlet = 1000056,
286 
287  /// electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source.
289 
290  /// flow injection analysis: Sample is directly injected or infused into the ionization source.
292 
293  /// inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction.
295 
296  /// infusion: The continuous flow of solution of a sample into the ionization source.
297  MS_infusion = 1000060,
298 
299  /// jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity.
300  MS_jet_separator = 1000061,
301 
302  /// membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane.
304 
305  /// moving belt: Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules.
306  MS_moving_belt = 1000063,
307 
308  /// moving wire: Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules.
309  MS_moving_wire = 1000064,
310 
311  /// open split: A division of flowing stream of liquid into two streams.
312  MS_open_split = 1000065,
313 
314  /// particle beam: Method for generating ions from a solution of an analyte.
315  MS_particle_beam = 1000066,
316 
317  /// reservoir: A sample inlet method involving a reservoir.
318  MS_reservoir = 1000067,
319 
320  /// septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.
321  MS_septum = 1000068,
322 
323  /// thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample.
325 
326  /// atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
328 
329  /// APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
331 
332  /// chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
334 
335  /// CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
337 
338  /// Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
340 
341  /// EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
343 
344  /// electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
346 
347  /// ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
349 
350  /// fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
352 
353  /// FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
355 
356  /// matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
358 
359  /// MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
361 
362  /// negative ion mode: OBSOLETE.
364 
365  /// positive ion mode: OBSOLETE.
367 
368  /// axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer.
370 
371  /// fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
373 
374  /// FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
376 
377  /// magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z.
379 
380  /// quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
381  MS_quadrupole = 1000081,
382 
383  /// quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
385 
386  /// Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
388 
389  /// QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
391 
392  /// Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
394 
395  /// radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer.
397 
398  /// time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
399  MS_time_of_flight = 1000084,
400 
401  /// TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
403 
404  /// baseline: An attribute of resolution when recording the detector response in absence of the analyte.
405  MS_baseline = 1000085,
406 
407  /// full width at half-maximum: A measure of resolution represented as width of the peak at half peak height.
409 
410  /// FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height.
412 
413  /// ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height.
415 
416  /// constant: When resolution is constant with respect to m/z.
418 
419  /// proportional: When resolution is proportional with respect to m/z.
421 
422  /// mass scan: A variation of instrument where a selected mass is scanned.
423  MS_mass_scan = 1000090,
424 
425  /// selected ion detection: Please see Single Ion Monitoring.
427 
428  /// decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
430 
431  /// increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
433 
434  /// exponential: The mass scan is done in exponential mode.
435  MS_exponential = 1000094,
436 
437  /// linear: The mass scan is done in linear mode.
439 
440  /// quadratic: The mass scan is done in quadratic mode.
441  MS_quadratic = 1000096,
442 
443  /// constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
445 
446  /// multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring.
448 
449  /// multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
451 
452  /// MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
454 
455  /// precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
457 
458  /// product ion scan: The specific scan function or process that records product ion spectrum.
460 
461  /// single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum.
463 
464  /// single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
466 
467  /// None ??: None.
469 
470  /// reflectron off: Reflectron is off.
471  MS_reflectron_off = 1000105,
472 
473  /// reflectron on: Reflectron is on.
474  MS_reflectron_on = 1000106,
475 
476  /// channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
477  MS_channeltron = 1000107,
478 
479  /// Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
481 
482  /// conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected.
484 
485  /// conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier.
487 
488  /// daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
489  MS_daly_detector = 1000110,
490 
491  /// Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
493 
494  /// electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
496 
497  /// EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
499 
500  /// faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device.
501  MS_faraday_cup = 1000112,
502 
503  /// focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
505 
506  /// microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
508 
509  /// multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
511 
512  /// multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
514 
515  /// photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
517 
518  /// PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
520 
521  /// analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
523 
524  /// ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
526 
527  /// pulse counting: Definition to do.
528  MS_pulse_counting = 1000118,
529 
530  /// time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices.
532 
533  /// TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices.
535 
536  /// transient recorder: A detector acquisition mode used for detecting transient signals.
538 
539  /// AB SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\".
541 
542  /// Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
544 
545  /// IonSpec instrument model: IonSpec corporation instrument model.
547 
548  /// Shimadzu instrument model: Shimadzu corporation instrument model.
550 
551  /// Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
553 
554  /// Waters instrument model: Waters Corporation instrument model.
556 
557  /// centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
559 
560  /// Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
562 
563  /// profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
565 
566  /// continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
568 
569  /// Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
571 
572  /// negative scan: Polarity of the scan is negative.
573  MS_negative_scan = 1000129,
574 
575  /// positive scan: Polarity of the scan is positive.
576  MS_positive_scan = 1000130,
577 
578  /// number of detector counts: The number of counted events observed in one or a group of elements of a detector.
580 
581  /// percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity.
583 
584  /// collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
586 
587  /// CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
589 
590  /// CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
592 
593  /// collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
595 
596  /// plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
598 
599  /// PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
601 
602  /// post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
604 
605  /// PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
607 
608  /// surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
610 
611  /// SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface.
613 
614  /// electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
616 
617  /// eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
619 
620  /// normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions.
622 
623  /// 4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
624  MS_4000_QTRAP = 1000139,
625 
626  /// 4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
628 
629  /// apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
630  MS_apex_IV = 1000141,
631 
632  /// apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
633  MS_apex_Q = 1000142,
634 
635  /// API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
636  MS_API_150EX = 1000143,
637 
638  /// API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
639  MS_API_150EX_Prep = 1000144,
640 
641  /// API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
642  MS_API_2000 = 1000145,
643 
644  /// API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
645  MS_API_3000 = 1000146,
646 
647  /// API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
648  MS_API_4000 = 1000147,
649 
650  /// autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
651  MS_autoflex_II = 1000148,
652 
653  /// autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
655 
656  /// Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.
658 
659  /// BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
660  MS_BioTOF_II = 1000151,
661 
662  /// BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
663  MS_BioTOF_Q = 1000152,
664 
665  /// DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
667 
668  /// DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
669  MS_DELTAplusXP = 1000154,
670 
671  /// ELEMENT2: ThermoFinnigan ELEMENT2 MS.
673 
674  /// esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
675  MS_esquire_4000 = 1000156,
676 
677  /// esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
678  MS_esquire_6000 = 1000157,
679 
680  /// explorer: IonSpec Explorer MS.
681  MS_explorer = 1000158,
682 
683  /// GCT: Waters oa-ToF based GCT.
684  MS_GCT = 1000159,
685 
686  /// HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
687  MS_HCT = 1000160,
688 
689  /// HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
690  MS_HCTplus = 1000161,
691 
692  /// HiRes ESI: IonSpec HiResESI MS.
693  MS_HiRes_ESI = 1000162,
694 
695  /// HiRes MALDI: IonSpec HiResMALDI MS.
696  MS_HiRes_MALDI = 1000163,
697 
698  /// IsoPrime: Waters IsoPrime MS.
699  MS_IsoPrime = 1000164,
700 
701  /// IsoProbe: Waters IsoProbe MS.
702  MS_IsoProbe = 1000165,
703 
704  /// IsoProbe T: Waters IsoProbe T MS.
705  MS_IsoProbe_T = 1000166,
706 
707  /// LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
708  MS_LCQ_Advantage = 1000167,
709 
710  /// LCQ Classic: ThermoFinnigan LCQ Classic MS.
711  MS_LCQ_Classic = 1000168,
712 
713  /// LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
715 
716  /// M@LDI L: Waters oa-ToF based MALDI L.
717  MS_M_LDI_L = 1000170,
718 
719  /// M@LDI LR: Waters oa-ToF based MALDI LR.
720  MS_M_LDI_LR = 1000171,
721 
722  /// MAT253: ThermoFinnigan MAT253 MS.
723  MS_MAT253 = 1000172,
724 
725  /// MAT900XP: ThermoFinnigan MAT900XP MS.
726  MS_MAT900XP = 1000173,
727 
728  /// MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
729  MS_MAT900XP_Trap = 1000174,
730 
731  /// MAT95XP: ThermoFinnigan MAT95XP MS.
732  MS_MAT95XP = 1000175,
733 
734  /// MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
735  MS_MAT95XP_Trap = 1000176,
736 
737  /// microflex: Bruker Daltonics' microflex: MALDI TOF.
738  MS_microflex = 1000177,
739 
740  /// microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
741  MS_microTOF_LC = 1000178,
742 
743  /// neptune: ThermoFinnigan NEPTUNE MS.
744  MS_neptune = 1000179,
745 
746  /// NG-5400: Waters NG-5400 MS.
747  MS_NG_5400 = 1000180,
748 
749  /// OMEGA: IonSpec OMEGA MS.
750  MS_OMEGA = 1000181,
751 
752  /// OMEGA-2001: IonSpec OMEGA-2001 MS.
753  MS_OMEGA_2001 = 1000182,
754 
755  /// OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
756  MS_OmniFlex = 1000183,
757 
758  /// Platform ICP: Waters Platform ICP MS.
759  MS_Platform_ICP = 1000184,
760 
761  /// PolarisQ: ThermoFinnigan PolarisQ MS.
762  MS_PolarisQ = 1000185,
763 
764  /// proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
766 
767  /// Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
768  MS_Q_TRAP = 1000187,
769 
770  /// Q-Tof micro: Waters oa-ToF based Q-Tof micro.
771  MS_Q_Tof_micro = 1000188,
772 
773  /// Q-Tof ultima: Waters oa-ToF based Q-Tof Ultima.
774  MS_Q_Tof_ultima = 1000189,
775 
776  /// QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
777  MS_QSTAR = 1000190,
778 
779  /// quattro micro: Waters oa-ToF based micro.
780  MS_quattro_micro = 1000191,
781 
782  /// Quattro UItima: Waters oa-ToF based Ultima.
783  MS_Quattro_UItima = 1000192,
784 
785  /// Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
786  MS_Surveyor_MSQ = 1000193,
787 
788  /// SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
789  MS_SymBiot_I = 1000194,
790 
791  /// SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
792  MS_SymBiot_XVI = 1000195,
793 
794  /// TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
795  MS_TEMPUS_TOF = 1000196,
796 
797  /// TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
798  MS_TRACE_DSQ = 1000197,
799 
800  /// TRITON: ThermoFinnigan TRITON MS.
801  MS_TRITON = 1000198,
802 
803  /// TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
804  MS_TSQ_Quantum = 1000199,
805 
806  /// ultima: IonSpec Ultima MS.
807  MS_ultima = 1000200,
808 
809  /// ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
810  MS_ultraflex = 1000201,
811 
812  /// ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
814 
815  /// Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
816  MS_Voyager_DE_PRO = 1000203,
817 
818  /// Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
819  MS_Voyager_DE_STR = 1000204,
820 
821  /// selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
823 
824  /// Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
826 
827  /// SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
829 
830  /// selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
832 
833  /// SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
835 
836  /// accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition.
837  MS_accurate_mass = 1000207,
838 
839  /// average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance.
840  MS_average_mass = 1000208,
841 
842  /// appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
844 
845  /// AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
847 
848  /// base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
849  MS_base_peak = 1000210,
850 
851  /// BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
853 
854  /// OBSOLETE charge number: OBSOLETE. The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
856 
857  /// z (OBSOLETE charge number): OBSOLETE. The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
859 
860  /// dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
862 
863  /// Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
865 
866  /// electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
868 
869  /// EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
871 
872  /// electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization.
874 
875  /// exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
876  MS_exact_mass = 1000215,
877 
878  /// field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields.
880 
881  /// FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields.
883 
884  /// ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule.
886 
887  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
889 
890  /// ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
892 
893  /// IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
895 
896  /// isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
898 
899  /// IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
901 
902  /// magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer.
904 
905  /// mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.
906  MS_mass_defect = 1000222,
907 
908  /// mass number: The sum of the protons and neutrons in an atom, molecule or ion.
909  MS_mass_number = 1000223,
910 
911  /// molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
912  MS_molecular_mass = 1000224,
913 
914  /// monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element.
916 
917  /// molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
919 
920  /// MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
922 
923  /// multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed.
925 
926  /// MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed.
928 
929  /// nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms.
930  MS_nitrogen_rule = 1000228,
931 
932  /// nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value.
933  MS_nominal_mass = 1000229,
934 
935  /// odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions.
937 
938  /// peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.
939  MS_peak = 1000231,
940 
941  /// peak intensity: The height or area of a peak in a mass spectrum.
943 
944  /// proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
946 
947  /// PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
949 
950  /// mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.
952 
953  /// total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
955 
956  /// TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
958 
959  /// transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.
960  MS_transmission = 1000236,
961 
962  /// unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
964 
965  /// u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
967 
968  /// accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
970 
971  /// AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
973 
974  /// atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
976 
977  /// AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
979 
980  /// atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
982 
983  /// API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
985 
986  /// Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
988 
989  /// APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
991 
992  /// blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
994 
995  /// BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
997 
998  /// charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1000 
1001  /// CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1003 
1004  /// consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1006 
1007  /// CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1009 
1010  /// charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1012 
1013  /// CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1015 
1016  /// delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1018 
1019  /// DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1021 
1022  /// desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1024 
1025  /// DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1027 
1028  /// direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1030 
1031  /// DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1033 
1034  /// direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1036 
1037  /// DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1039 
1040  /// electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1042 
1043  /// ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1045 
1046  /// even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1048 
1049  /// EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1051 
1052  /// electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1054 
1055  /// EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1057 
1058  /// electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1060 
1061  /// EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1063 
1064  /// electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1066 
1067  /// ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1069 
1070  /// flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1072 
1073  /// FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1075 
1076  /// high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1078 
1079  /// FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1081 
1082  /// field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1084 
1085  /// FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1087 
1088  /// field ionization: The removal of electrons from any species by interaction with a high electric field.
1090 
1091  /// FI (field ionization): The removal of electrons from any species by interaction with a high electric field.
1093 
1094  /// glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1096 
1097  /// GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1099 
1100  /// ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1102 
1103  /// IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1105 
1106  /// ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1108 
1109  /// IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1111 
1112  /// infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1114 
1115  /// IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1117 
1118  /// isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1120 
1121  /// IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1123 
1124  /// ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination.
1125  MS_ion_trap = 1000264,
1126 
1127  /// IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination.
1129 
1130  /// kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1132 
1133  /// KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1135 
1136  /// Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1138 
1139  /// Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1141 
1142  /// LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1144 
1145  /// mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1147 
1148  /// MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1150 
1151  /// mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1153 
1154  /// MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1156 
1157  /// mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1159 
1160  /// MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1162 
1163  /// multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1165 
1166  /// MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1168 
1169  /// Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
1171 
1172  /// NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions.
1174 
1175  /// neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1177 
1178  /// NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1180 
1181  /// photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1183 
1184  /// PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1186 
1187  /// pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1189 
1190  /// PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1192 
1193  /// collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1195 
1196  /// q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1198 
1199  /// resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1201 
1202  /// REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1204 
1205  /// residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1207 
1208  /// RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1210 
1211  /// surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1213 
1214  /// SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1216 
1217  /// surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1219 
1220  /// SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1222 
1223  /// suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1225 
1226  /// SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1228 
1229  /// selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1231 
1232  /// SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1234 
1235  /// sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1237 
1238  /// SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1240 
1241  /// Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
1243 
1244  /// SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
1246 
1247  /// stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS/MS experiments.
1249 
1250  /// SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS/MS experiments.
1252 
1253  /// total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1255 
1256  /// TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1258 
1259  /// time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1261 
1262  /// TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1264 
1265  /// time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1267 
1268  /// TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1270 
1271  /// cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles.
1272  MS_cyclotron = 1000288,
1273 
1274  /// double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam.
1276 
1277  /// hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry.
1279 
1280  /// linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap.
1282 
1283  /// mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate.
1285 
1286  /// mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions.
1288 
1289  /// mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z).
1290  MS_mass_spectrum = 1000294,
1291 
1292  /// mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians.
1294 
1295  /// nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians.
1297 
1298  /// paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected.
1300 
1301  /// prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path.
1303 
1304  /// quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term.
1306 
1307  /// reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time.
1308  MS_reflectron = 1000300,
1309 
1310  /// sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection.
1312 
1313  /// tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
1315 
1316  /// transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
1318 
1319  /// accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
1321 
1322  /// cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB.
1324 
1325  /// dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time.
1327 
1328  /// einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle.
1329  MS_einzel_lens = 1000307,
1330 
1331  /// electric field strength: The magnitude of the force per unit charge at a given point in space.
1333 
1334  /// first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
1336 
1337  /// fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
1339 
1340  /// kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field.
1342 
1343  /// mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
1345 
1346  /// scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
1348 
1349  /// mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap.
1351 
1352  /// mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap.
1354 
1355  /// mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer.
1357 
1358  /// orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage.
1360 
1361  /// resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it.
1363 
1364  /// space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time.
1366 
1367  /// static field: An electric or magnetic field that does not change in time.
1368  MS_static_field = 1000320,
1369 
1370  /// 2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained.
1372 
1373  /// charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z.
1375 
1376  /// constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
1378 
1379  /// constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
1381 
1382  /// Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment.
1384 
1385  /// constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1387 
1388  /// constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1390 
1391  /// constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1393 
1394  /// constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1396 
1397  /// consecutive reaction monitoring: A type of MS/MS experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1399 
1400  /// e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions.
1402 
1403  /// linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum.
1405 
1406  /// linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors.
1408 
1409  /// Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors.
1411 
1412  /// Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended.
1414 
1415  /// Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan.
1417 
1418  /// MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time.
1419  MS_MS_MS_in_Time = 1000334,
1420 
1421  /// MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition.
1423 
1424  /// neutral loss: The loss of an uncharged species during a rearrangement process.
1425  MS_neutral_loss = 1000336,
1426 
1427  /// nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated.
1429 
1430  /// nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions.
1432 
1433  /// nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions.
1435 
1436  /// precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated.
1437  MS_precursor_ion = 1000340,
1438 
1439  /// precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z.
1441 
1442  /// product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated.
1443  MS_product_ion = 1000342,
1444 
1445  /// product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions.
1447 
1448  /// progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1449  MS_progeny_ion = 1000344,
1450 
1451  /// Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1453 
1454  /// array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector.
1456 
1457  /// conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected.
1459 
1460  /// dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode.
1461  MS_dynode = 1000347,
1462 
1463  /// focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
1465 
1466  /// ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier.
1468 
1469  /// point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.
1471 
1472  /// postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.
1474 
1475  /// secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go.
1477 
1478  /// adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.
1479  MS_adduct_ion = 1000353,
1480 
1481  /// aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.
1482  MS_aromatic_ion = 1000354,
1483 
1484  /// analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.
1485  MS_analog_ion = 1000355,
1486 
1487  /// anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
1489 
1490  /// cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
1492 
1493  /// cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-.
1494  MS_cluster_ion = 1000358,
1495 
1496  /// Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion.
1498 
1499  /// diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives.
1501 
1502  /// dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+.
1503  MS_dimeric_ion = 1000361,
1504 
1505  /// distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion.
1506  MS_distonic_ion = 1000362,
1507 
1508  /// enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions.
1509  MS_enium_ion = 1000363,
1510 
1511  /// fragment ion: A product ion that results from the dissociation of a precursor ion.
1513 
1514  /// ion?: An atomic or molecular species having a net positive or negative electric charge.
1515  MS_ion_ = 1000365,
1516 
1517  /// Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue.
1519 
1520  /// Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer.
1522 
1523  /// metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection.
1525 
1526  /// molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion.
1527  MS_molecular_ion = 1000369,
1528 
1529  /// negative ion: An atomic or molecular species having a net negative electric charge.
1530  MS_negative_ion = 1000370,
1531 
1532  /// non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions.
1534 
1535  /// onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+.
1536  MS_onium_ion = 1000372,
1537 
1538  /// principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions.
1539  MS_principal_ion = 1000373,
1540 
1541  /// positive ion: An atomic or molecular species having a net positive electric charge.
1542  MS_positive_ion = 1000374,
1543 
1544  /// protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended.
1546 
1547  /// radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation.
1548  MS_radical_ion = 1000376,
1549 
1550  /// reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion.
1551  MS_reference_ion = 1000377,
1552 
1553  /// stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer.
1554  MS_stable_ion = 1000378,
1555 
1556  /// unstable ion: An ion with sufficient energy to dissociate within the ion source.
1557  MS_unstable_ion = 1000379,
1558 
1559  /// adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state.
1561 
1562  /// associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron.
1564 
1565  /// atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1567 
1568  /// autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source.
1570 
1571  /// autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source.
1573 
1574  /// charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization.
1576 
1577  /// chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization.
1579 
1580  /// desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface.
1582 
1583  /// dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion.
1585 
1586  /// electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
1588 
1589  /// ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules.
1591 
1592  /// ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products.
1594 
1595  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1597 
1598  /// laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.
1600 
1601  /// liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization.
1603 
1604  /// membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source.
1606 
1607  /// microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray.
1609 
1610  /// nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1612 
1613  /// nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1615 
1616  /// penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited.
1618 
1619  /// plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
1621 
1622  /// pre-ionization state: An electronic state capable of undergoing auto-Ionization.
1624 
1625  /// secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions.
1627 
1628  /// soft ionization: The formation of gas-phase ions without extensive fragmentation.
1630 
1631  /// spark ionization: The formation of ions from a solid material by an intermittent electrical discharge.
1633 
1634  /// surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization.
1636 
1637  /// surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1639 
1640  /// thermal ionization: The ionization of a neutral species through contact with a high temperature surface.
1642 
1643  /// vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state.
1645 
1646  /// association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion.
1648 
1649  /// alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds.
1651 
1652  /// beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds.
1653  MS_beta_cleavage = 1000411,
1654 
1655  /// buffer gas: An inert gas used for collisional deactivation of internally excited ions.
1656  MS_buffer_gas = 1000412,
1657 
1658  /// charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation.
1660 
1661  /// charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion.
1663 
1664  /// charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion.
1666 
1667  /// charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion.
1669 
1670  /// charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species.
1672 
1673  /// collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion.
1675 
1676  /// collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
1677  MS_collision_gas = 1000419,
1678 
1679  /// heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis.
1681 
1682  /// high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV.
1684 
1685  /// beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a beam-type collision cell.
1687 
1688  /// HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs in a beam-type collision cell.
1690 
1691  /// homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis.
1693 
1694  /// hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer.
1696 
1697  /// ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species.
1699 
1700  /// ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral.
1702 
1703  /// ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule.
1705 
1706  /// ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions.
1708 
1709  /// ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants.
1711 
1712  /// ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product.
1714 
1715  /// kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account.
1717 
1718  /// low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower.
1720 
1721  /// low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative.
1723 
1724  /// McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied.
1726 
1727  /// photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1729 
1730  /// multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1732 
1733  /// MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1735 
1736  /// partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral.
1738 
1739  /// ion reaction: Chemical transformation involving an ion.
1740  MS_ion_reaction = 1000437,
1741 
1742  /// superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners.
1744 
1745  /// surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion.
1747 
1748  /// unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion.
1750 
1751  /// scan: Function or process of the mass spectrometer where it records a spectrum.
1752  MS_scan = 1000441,
1753 
1754  /// spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis.
1755  MS_spectrum = 1000442,
1756 
1757  /// mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
1759 
1760  /// m/z Separation Method: Mass/charge separation Method.
1762 
1763  /// sequential m/z separation method: Sequential m/z separation method.
1765 
1766  /// fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1768 
1769  /// FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1771 
1772  /// LTQ: Finnigan LTQ MS.
1773  MS_LTQ = 1000447,
1774 
1775  /// LTQ FT: Finnigan LTQ FT MS.
1776  MS_LTQ_FT = 1000448,
1777 
1778  /// LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
1779  MS_LTQ_Orbitrap = 1000449,
1780 
1781  /// LXQ: Finnigan LXQ MS.
1782  MS_LXQ = 1000450,
1783 
1784  /// mass analyzer: Terms used to describe the Analyzer.
1785  MS_mass_analyzer = 1000451,
1786 
1787  /// analyzer (mass analyzer): Terms used to describe the Analyzer.
1789 
1790  /// data transformation: Terms used to describe types of data processing.
1792 
1793  /// data processing (data transformation): Terms used to describe types of data processing.
1795 
1796  /// detector: The device that detects ions.
1797  MS_detector = 1000453,
1798 
1799  /// instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5.
1801 
1802  /// ion selection attribute: Ion selection properties that are associated with a value.
1804 
1805  /// precursor activation: Terms to describe the precursor activation.
1807 
1808  /// activation (precursor activation): Terms to describe the precursor activation.
1810 
1811  /// sample: Terms to describe the sample.
1812  MS_sample = 1000457,
1813 
1814  /// source: Terms to describe the source.
1815  MS_source = 1000458,
1816 
1817  /// spectrum instrument description: Terms used to describe the spectrum.
1819 
1820  /// unit: Terms to describe units.
1821  MS_unit_OBSOLETE = 1000460,
1822 
1823  /// additional description: Terms to describe Additional.
1825 
1826  /// ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.
1827  MS_ion_optics = 1000462,
1828 
1829  /// instrument: Description of the instrument or the mass spectrometer.
1830  MS_instrument = 1000463,
1831 
1832  /// instrument configuration (instrument): Description of the instrument or the mass spectrometer.
1834 
1835  /// mass unit: A unit of measurement for mass.
1837 
1838  /// scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.
1839  MS_scan_polarity = 1000465,
1840 
1841  /// alternating: Alternating.
1843 
1844  /// 1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS/MS and 11 stages of manual MS/MS.
1846 
1847  /// 6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.
1849 
1850  /// 6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.
1852 
1853  /// 6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
1855 
1856  /// 6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
1858 
1859  /// 6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
1861 
1862  /// 6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges.
1864 
1865  /// 6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1867 
1868  /// 6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1870 
1871  /// 6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1873 
1874  /// 6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
1876 
1877  /// 6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
1879 
1880  /// 1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor.
1882 
1883  /// purgatory: Terms that will likely become obsolete unless there are wails of dissent.
1884  MS_purgatory = 1000479,
1885 
1886  /// mass analyzer attribute: Analyzer properties that are associated with a value.
1888 
1889  /// detector attribute: Detector attribute recognized as a value.
1891 
1892  /// source attribute: Property of a source device that need a value.
1894 
1895  /// Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
1897 
1898  /// orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer.
1899  MS_orbitrap = 1000484,
1900 
1901  /// nanospray inlet: Nanospray Inlet.
1903 
1904  /// source potential: Potential difference at the MS source in volts.
1906 
1907  /// ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry.
1909 
1910  /// Hitachi instrument model: Hitachi instrument model.
1912 
1913  /// Varian instrument model: Varian instrument model.
1915 
1916  /// Agilent instrument model: Agilent instrument model.
1918 
1919  /// Dionex instrument model: Dionex instrument model.
1921 
1922  /// Thermo Electron instrument model: Thermo Electron Corporation instrument model.
1924 
1925  /// Finnigan MAT instrument model: Finnigan MAT instrument model.
1927 
1928  /// Thermo Scientific instrument model: Thermo Scientific instrument model.
1930 
1931  /// Applied Biosystems instrument model: Applied Biosystems instrument model.
1933 
1934  /// ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
1936 
1937  /// instrument attribute: Instrument properties that are associated with a value.
1939 
1940  /// zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
1941  MS_zoom_scan = 1000497,
1942 
1943  /// enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
1945 
1946  /// full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
1948 
1949  /// spectrum attribute: Spectrum properties that are associated with a value.
1951 
1952  /// scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
1954 
1955  /// scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
1957 
1958  /// dwell time: The time spent gathering data across a peak.
1959  MS_dwell_time = 1000502,
1960 
1961  /// scan attribute: Scan properties that are associated with a value.
1963 
1964  /// base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
1965  MS_base_peak_m_z = 1000504,
1966 
1967  /// base peak intensity: The intensity of the greatest peak in the mass spectrum.
1969 
1970  /// ion role: Ion Role.
1971  MS_ion_role = 1000506,
1972 
1973  /// ion attribute: Ion properties that are associated with a value.
1974  MS_ion_attribute = 1000507,
1975 
1976  /// ion chemical type: Ion Type.
1978 
1979  /// activation energy: Activation Energy.
1981 
1982  /// precursor activation attribute: Precursor Activation Attribute.
1984 
1985  /// ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
1986  MS_ms_level = 1000511,
1987 
1988  /// filter string: A string unique to Thermo instrument describing instrument settings for the scan.
1989  MS_filter_string = 1000512,
1990 
1991  /// binary data array: A data array of values.
1993 
1994  /// m/z array: A data array of m/z values.
1995  MS_m_z_array = 1000514,
1996 
1997  /// intensity array: A data array of intensity values.
1999 
2000  /// charge array: A data array of charge values.
2001  MS_charge_array = 1000516,
2002 
2003  /// signal to noise array: A data array of signal-to-noise values.
2005 
2006  /// binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float.
2008 
2009  /// 32-bit integer: Signed 32-bit little-endian integer.
2011 
2012  /// 16-bit float: Signed 16-bit float.
2014 
2015  /// 32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
2016  MS_32_bit_float = 1000521,
2017 
2018  /// 64-bit integer: Signed 64-bit little-endian integer.
2020 
2021  /// 64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
2022  MS_64_bit_float = 1000523,
2023 
2024  /// data file content: Describes the data content on the file.
2026 
2027  /// spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks.
2029 
2030  /// Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acquisition.
2032 
2033  /// highest observed m/z: Highest m/z value observed in the m/z array.
2035 
2036  /// lowest observed m/z: Lowest m/z value observed in the m/z array.
2038 
2039  /// instrument serial number: Serial Number of the instrument.
2041 
2042  /// file format conversion: Conversion of one file format to another.
2044 
2045  /// software: Software related to the recording or transformation of spectra.
2046  MS_software = 1000531,
2047 
2048  /// Xcalibur: Thermo Finnigan software for data acquisition and analysis.
2049  MS_Xcalibur = 1000532,
2050 
2051  /// Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
2052  MS_Bioworks = 1000533,
2053 
2054  /// MassLynx: Micromass software for data acquisition and analysis.
2055  MS_MassLynx = 1000534,
2056 
2057  /// FlexAnalysis: Bruker software for data analysis.
2058  MS_FlexAnalysis = 1000535,
2059 
2060  /// Data Explorer: Applied Biosystems software for data acquisition and analysis.
2061  MS_Data_Explorer = 1000536,
2062 
2063  /// 4700 Explorer: Applied Biosystems software for data acquisition and analysis.
2064  MS_4700_Explorer = 1000537,
2065 
2066  /// massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2067  MS_massWolf = 1000538,
2068 
2069  /// wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2071 
2072  /// Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system.
2074 
2075  /// FlexControl: Bruker software for data acquisition.
2076  MS_FlexControl = 1000540,
2077 
2078  /// ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\".
2079  MS_ReAdW = 1000541,
2080 
2081  /// MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program.
2082  MS_MzStar = 1000542,
2083 
2084  /// data processing action: Data processing attribute used to describe the type of data processing performed on the data file.
2086 
2087  /// Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.
2089 
2090  /// Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
2092 
2093  /// Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format.
2095 
2096  /// object attribute: Object Attribute.
2098 
2099  /// sample attribute: Sample properties that are associated with a value.
2101 
2102  /// selection window attribute: Selection window properties that are associated with a value.
2104 
2105  /// time unit: Time Unit.
2107 
2108  /// Analyst: AB SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
2109  MS_Analyst = 1000551,
2110 
2111  /// maldi spot identifier: Maldi Spot Identifier.
2113 
2114  /// Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
2115  MS_Trapper = 1000553,
2116 
2117  /// LCQ Deca: ThermoFinnigan LCQ Deca.
2118  MS_LCQ_Deca = 1000554,
2119 
2120  /// LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
2122 
2123  /// LTQ Orbitrap XL: LTQ Orbitrap XL.
2125 
2126  /// LTQ FT Ultra: LTQ FT Ultra.
2127  MS_LTQ_FT_Ultra = 1000557,
2128 
2129  /// GC Quantum: GC Quantum.
2130  MS_GC_Quantum = 1000558,
2131 
2132  /// spectrum type: Spectrum type.
2133  MS_spectrum_type = 1000559,
2134 
2135  /// mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
2137 
2138  /// data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data.
2140 
2141  /// ABI WIFF format: Applied Biosystems WIFF file format.
2143 
2144  /// Thermo RAW format: Thermo Scientific RAW file format.
2146 
2147  /// PSI mzData format: Proteomics Standards Inititative mzData file format.
2149 
2150  /// Micromass PKL format: Micromass PKL file format.
2152 
2153  /// ISB mzXML format: Institute of Systems Biology mzXML file format.
2155 
2156  /// Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
2158 
2159  /// MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files.
2160  MS_MD5 = 1000568,
2161 
2162  /// SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity.
2163  MS_SHA_1 = 1000569,
2164 
2165  /// spectra combination: Method used to combine the mass spectra.
2167 
2168  /// sum of spectra: Spectra Sum.
2170 
2171  /// binary data compression type: Compression Type.
2173 
2174  /// median of spectra: Spectra is combined by calculating the median of the spectra.
2176 
2177  /// zlib compression: Zlib.
2179 
2180  /// mean of spectra: Spectra is combined by calculating the mean of the spectra.
2182 
2183  /// no compression: No Compression.
2185 
2186  /// raw data file: Describes the type of file and its content.
2187  MS_raw_data_file = 1000577,
2188 
2189  /// source file (raw data file): Describes the type of file and its content.
2191 
2192  /// LCQ Fleet: LCQ Fleet.
2193  MS_LCQ_Fleet = 1000578,
2194 
2195  /// MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2196  MS_MS1_spectrum = 1000579,
2197 
2198  /// full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2200 
2201  /// Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2203 
2204  /// Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2206 
2207  /// Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2209 
2210  /// MSn spectrum: MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2211  MS_MSn_spectrum = 1000580,
2212 
2213  /// multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2215 
2216  /// nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2218 
2219  /// product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2221 
2222  /// CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
2223  MS_CRM_spectrum = 1000581,
2224 
2225  /// SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2226  MS_SIM_spectrum = 1000582,
2227 
2228  /// MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2230 
2231  /// multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2233 
2234  /// selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2236 
2237  /// SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2238  MS_SRM_spectrum = 1000583,
2239 
2240  /// MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2242 
2243  /// multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2245 
2246  /// selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2248 
2249  /// mzML format: Proteomics Standards Inititative mzML file format.
2250  MS_mzML_format = 1000584,
2251 
2252  /// contact attribute: Details about a person or organization to contact in case of concern or discussion about the file.
2254 
2255  /// contact name: Name of the contact person or organization.
2256  MS_contact_name = 1000586,
2257 
2258  /// contact address: Postal address of the contact person or organization.
2260 
2261  /// contact URL: Uniform Resource Locator related to the contact person or organization.
2262  MS_contact_URL = 1000588,
2263 
2264  /// contact email: Email address of the contact person or organization.
2265  MS_contact_email = 1000589,
2266 
2267  /// contact affiliation: Home institution of the contact person.
2269 
2270  /// MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program.
2271  MS_MzWiff = 1000591,
2272 
2273  /// smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process.
2274  MS_smoothing = 1000592,
2275 
2276  /// baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values.
2278 
2279  /// low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2281 
2282  /// thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2284 
2285  /// time array: A data array of relative time offset values from a reference time.
2286  MS_time_array = 1000595,
2287 
2288  /// measurement method: An attribute of resolution when recording the detector response in absence of the analyte.
2290 
2291  /// ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
2293 
2294  /// electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2296 
2297  /// ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2299 
2300  /// pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2302 
2303  /// PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2305 
2306  /// Proteios: Database application and analysis platform for proteomics.
2307  MS_Proteios = 1000600,
2308 
2309  /// ProteinLynx Global Server: Waters software for data analysis.
2311 
2312  /// Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
2314 
2315  /// Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
2317 
2318  /// LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
2319  MS_LCMS_IT_TOF = 1000604,
2320 
2321  /// LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
2322  MS_LCMS_2010EV = 1000605,
2323 
2324  /// LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
2325  MS_LCMS_2010A = 1000606,
2326 
2327  /// AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
2329 
2330  /// AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
2331  MS_AXIMA_QIT = 1000608,
2332 
2333  /// AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
2335 
2336  /// AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
2338 
2339  /// AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
2341 
2342  /// AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
2344 
2345  /// DTA format: SEQUEST DTA file format.
2346  MS_DTA_format = 1000613,
2347 
2348  /// ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global Server.
2350 
2351  /// ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2353 
2354  /// pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2356 
2357  /// preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time.
2359 
2360  /// wavelength array: A data array of electromagnetic radiation wavelength values.
2362 
2363  /// highest observed wavelength: Highest wavelength observed in an EMR spectrum.
2365 
2366  /// lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
2368 
2369  /// PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
2371 
2372  /// photodiode array detector: An array detector used to record spectra in the ultraviolet and visible region of light.
2374 
2375  /// PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visible region of light.
2377 
2378  /// Surveyor PDA: Surveyor PDA.
2379  MS_Surveyor_PDA = 1000622,
2380 
2381  /// Accela PDA: Accela PDA.
2382  MS_Accela_PDA = 1000623,
2383 
2384  /// inductive detector: Inductive detector.
2386 
2387  /// image current detector (inductive detector): Inductive detector.
2389 
2390  /// chromatogram: The representation of detector response versus time.
2391  MS_chromatogram = 1000625,
2392 
2393  /// chromatogram type: Broad category or type of a chromatogram.
2395 
2396  /// selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2398 
2399  /// SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2401 
2402  /// basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point.
2404 
2405  /// low intensity threshold: Threshold below which some action is taken.
2407 
2408  /// data processing parameter: Data processing parameter used in the data processing performed on the data file.
2410 
2411  /// high intensity threshold: Threshold above which some action is taken.
2413 
2414  /// Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
2415  MS_Q_Tof_Premier = 1000632,
2416 
2417  /// possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty.
2419 
2420  /// DSQ: ThermoFinnigan DSQ GC-MS.
2421  MS_DSQ = 1000634,
2422 
2423  /// ITQ 700: Thermo Scientific ITQ 700 GC-MS.
2424  MS_ITQ_700 = 1000635,
2425 
2426  /// ITQ 900: Thermo Scientific ITQ 900 GC-MS.
2427  MS_ITQ_900 = 1000636,
2428 
2429  /// ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
2430  MS_ITQ_1100 = 1000637,
2431 
2432  /// LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
2433  MS_LTQ_XL_ETD = 1000638,
2434 
2435  /// LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
2437 
2438  /// DFS: Thermo Scientific DFS HR GC-MS.
2439  MS_DFS = 1000640,
2440 
2441  /// DSQ II: Thermo Scientific DSQ II GC-MS.
2442  MS_DSQ_II = 1000641,
2443 
2444  /// MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
2445  MS_MALDI_LTQ_XL = 1000642,
2446 
2447  /// MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
2449 
2450  /// TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
2452 
2453  /// Element XR: Thermo Scientific Element XR HR-ICP-MS.
2454  MS_Element_XR = 1000645,
2455 
2456  /// Element 2: Thermo Scientific Element 2 HR-ICP-MS.
2457  MS_Element_2 = 1000646,
2458 
2459  /// Element GD: Thermo Scientific Element GD Glow Discharge MS.
2460  MS_Element_GD = 1000647,
2461 
2462  /// GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
2463  MS_GC_IsoLink = 1000648,
2464 
2465  /// Exactive: Thermo Scientific Exactive MS.
2466  MS_Exactive = 1000649,
2467 
2468  /// Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
2470 
2471  /// 3200 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
2472  MS_3200_QTRAP = 1000651,
2473 
2474  /// 4800 Plus MALDI TOF/TOF: AB SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
2476 
2477  /// API 3200: AB SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
2478  MS_API_3200 = 1000653,
2479 
2480  /// API 5000: AB SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
2481  MS_API_5000 = 1000654,
2482 
2483  /// QSTAR Elite: AB SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
2484  MS_QSTAR_Elite = 1000655,
2485 
2486  /// QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
2487  MS_QSTAR_Pulsar = 1000656,
2488 
2489  /// QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
2490  MS_QSTAR_XL = 1000657,
2491 
2492  /// 4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
2494 
2495  /// 4000 Series Explorer Software: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
2497 
2498  /// GPS Explorer: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
2499  MS_GPS_Explorer = 1000661,
2500 
2501  /// LightSight Software: AB SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
2503 
2504  /// ProteinPilot Software: AB SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
2506 
2507  /// TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
2509 
2510  /// MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
2512 
2513  /// MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
2515 
2516  /// BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
2517  MS_BioAnalyst = 1000667,
2518 
2519  /// Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
2520  MS_Pro_ID = 1000668,
2521 
2522  /// Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
2523  MS_Pro_ICAT = 1000669,
2524 
2525  /// Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
2526  MS_Pro_Quant = 1000670,
2527 
2528  /// Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
2529  MS_Pro_BLAST = 1000671,
2530 
2531  /// Cliquid: AB SCIEX Cliquid software for data analysis and quantitation.
2532  MS_Cliquid = 1000672,
2533 
2534  /// MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
2536 
2537  /// MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
2538  MS_MultiQuant = 1000674,
2539 
2540  /// 6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2542 
2543  /// 6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2545 
2546  /// 6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2548 
2549  /// MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
2551 
2552  /// MassHunter Easy Access: Software for open access data acquisition.
2554 
2555  /// MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
2557 
2558  /// MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data.
2560 
2561  /// MassHunter Metabolite ID: Software for identification of metabolites.
2563 
2564  /// MassHunter BioConfirm: Software for protein characterization.
2566 
2567  /// Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2568  MS_Genespring_MS = 1000684,
2569 
2570  /// MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2572 
2573  /// METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites.
2574  MS_METLIN = 1000686,
2575 
2576  /// Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures.
2578 
2579  /// 6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers.
2581 
2582  /// Agilent software: Agilent software for data acquisition and analysis.
2584 
2585  /// AB SCIEX software: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
2587 
2588  /// Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
2590 
2591  /// Bruker software: Bruker software for data acquisition and analysis.
2593 
2594  /// Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
2596 
2597  /// Waters software: Waters software for data acquisition and analysis.
2599 
2600  /// apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
2601  MS_apex_ultra = 1000695,
2602 
2603  /// autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
2605 
2606  /// Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
2608 
2609  /// HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
2610  MS_HCTultra = 1000698,
2611 
2612  /// HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
2613  MS_HCTultra_PTM = 1000699,
2614 
2615  /// HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
2617 
2618  /// microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
2619  MS_microflex_LT = 1000701,
2620 
2621  /// micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
2622  MS_micrOTOF = 1000702,
2623 
2624  /// micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
2625  MS_micrOTOF_Q = 1000703,
2626 
2627  /// micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
2628  MS_micrOTOF_Q_II = 1000704,
2629 
2630  /// ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
2632 
2633  /// apexControl: Bruker software for data acquisition.
2634  MS_apexControl = 1000706,
2635 
2636  /// BioTools: Bruker software for data analysis.
2637  MS_BioTools = 1000707,
2638 
2639  /// CLINPROT: Bruker CLINPROT software.
2640  MS_CLINPROT = 1000708,
2641 
2642  /// CLINPROT micro: Bruker CLINPROT micro software.
2644 
2645  /// CLINPROT robot: Bruker CLINPROT robot software.
2647 
2648  /// ClinProTools: Bruker ClinProTools software.
2649  MS_ClinProTools = 1000711,
2650 
2651  /// Compass: Bruker Compass software.
2652  MS_Compass = 1000712,
2653 
2654  /// Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
2656 
2657  /// Compass for micrOTOF: Bruker Compass for micrOTOF software.
2659 
2660  /// Compass OpenAccess: Bruker compass OpenAccess software.
2662 
2663  /// Compass Security Pack: Bruker compass Security Pack software.
2665 
2666  /// CompassXport: Bruker stand-alone software for data conversion.
2667  MS_CompassXport = 1000717,
2668 
2669  /// CompassXtract: Bruker software library for data access.
2670  MS_CompassXtract = 1000718,
2671 
2672  /// DataAnalysis: Bruker software for data analysis.
2673  MS_DataAnalysis = 1000719,
2674 
2675  /// dpControl: Bruker software for data acquisition.
2676  MS_dpControl = 1000720,
2677 
2678  /// esquireControl: Bruker software for data acquisition.
2680 
2681  /// flexImaging: Bruker software for data analysis.
2682  MS_flexImaging = 1000722,
2683 
2684  /// GENOLINK: Bruker GENOLINK software.
2685  MS_GENOLINK = 1000723,
2686 
2687  /// GenoTools: Bruker GenoTools software.
2688  MS_GenoTools = 1000724,
2689 
2690  /// HCTcontrol: Bruker software for data acquisition.
2691  MS_HCTcontrol = 1000725,
2692 
2693  /// micrOTOFcontrol: Bruker software for data acquisition.
2695 
2696  /// PolyTools: Bruker PolyTools software.
2697  MS_PolyTools = 1000727,
2698 
2699  /// ProfileAnalysis: Bruker software for data analysis.
2701 
2702  /// PROTEINEER: Bruker PROTEINEER software.
2703  MS_PROTEINEER = 1000729,
2704 
2705  /// PROTEINEER dp: Bruker PROTEINEER dp software.
2706  MS_PROTEINEER_dp = 1000730,
2707 
2708  /// PROTEINEER fc: Bruker PROTEINEER fc software.
2709  MS_PROTEINEER_fc = 1000731,
2710 
2711  /// PROTEINEER spII: Bruker PROTEINEER spII software.
2713 
2714  /// PROTEINEER-LC: Bruker PROTEINEER-LC software.
2715  MS_PROTEINEER_LC = 1000733,
2716 
2717  /// ProteinScape: Bruker ProteinScape software.
2718  MS_ProteinScape = 1000734,
2719 
2720  /// PureDisk: BrukerPureDisk software.
2721  MS_PureDisk = 1000735,
2722 
2723  /// QuantAnalysis: Bruker software for data analysis.
2724  MS_QuantAnalysis = 1000736,
2725 
2726  /// spControl: Bruker software for data acquisition.
2727  MS_spControl = 1000737,
2728 
2729  /// TargetAnalysis: Bruker TargetAnalysis software.
2731 
2732  /// WARP-LC: Bruker WARP-LC software.
2733  MS_WARP_LC = 1000739,
2734 
2735  /// parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
2737 
2738  /// Conversion to dta: Conversion to dta format.
2740 
2741  /// Bioworks SRF format: Thermo Finnigan SRF file format.
2743 
2744  /// TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
2746 
2747  /// selected ion m/z: Mass-to-charge ratio of an selected ion.
2749 
2750  /// retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics.
2752 
2753  /// high intensity data point removal: The removal of very high intensity data points.
2755 
2756  /// completion time: The time that a data processing action was finished.
2758 
2759  /// SSQ 7000: ThermoFinnigan SSQ 7000 MS.
2760  MS_SSQ_7000 = 1000748,
2761 
2762  /// TSQ 7000: ThermoFinnigan TSQ 7000 MS.
2763  MS_TSQ_7000 = 1000749,
2764 
2765  /// TSQ: ThermoFinnigan TSQ MS.
2766  MS_TSQ = 1000750,
2767 
2768  /// TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
2770 
2771  /// TOPP software: TOPP (The OpenMS proteomics pipeline) software.
2772  MS_TOPP_software = 1000752,
2773 
2774  /// BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
2776 
2777  /// DBExporter: Exports data from an OpenMS database to a file.
2778  MS_DBExporter = 1000754,
2779 
2780  /// DBImporter: Imports data to an OpenMS database.
2781  MS_DBImporter = 1000755,
2782 
2783  /// FileConverter: Converts between different MS file formats.
2784  MS_FileConverter = 1000756,
2785 
2786  /// FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
2787  MS_FileFilter = 1000757,
2788 
2789  /// FileMerger: Merges several MS files into one file.
2790  MS_FileMerger = 1000758,
2791 
2792  /// InternalCalibration: Applies an internal calibration.
2794 
2795  /// MapAligner: Corrects retention time distortions between maps.
2797 
2798  /// MapNormalizer: Normalizes peak intensities in an MS run.
2799  MS_MapNormalizer = 1000761,
2800 
2801  /// NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
2803 
2804  /// PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
2806 
2807  /// Resampler: Transforms an LC/MS map into a resampled map or a png image.
2808  MS_Resampler = 1000764,
2809 
2810  /// SpectraFilter: Applies a filter to peak spectra.
2812 
2813  /// TOFCalibration: Applies time of flight calibration.
2815 
2816  /// native spectrum identifier format: Describes how the native spectrum identifiers are formated.
2818 
2819  /// nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated.
2821 
2822  /// Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger.
2824 
2825  /// Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
2827 
2828  /// WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger.
2830 
2831  /// Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2833 
2834  /// Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2836 
2837  /// Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
2839 
2840  /// multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
2842 
2843  /// single peak list nativeID format: Native format defined by file=xsd:IDREF.
2845 
2846  /// scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2848 
2849  /// spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
2851 
2852  /// charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm.
2854 
2855  /// below precursor intensity dominance charge state calculation: Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z.
2857 
2858  /// precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions.
2860 
2861  /// msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans.
2863 
2864  /// Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques.
2866 
2867  /// LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible.
2869 
2870  /// Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2872 
2873  /// binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2875 
2876  /// Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2878 
2879  /// moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2881 
2882  /// box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2884 
2885  /// boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2887 
2888  /// sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2890 
2891  /// non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added.
2893 
2894  /// inclusive low intensity threshold: Threshold at or below which some action is taken.
2896 
2897  /// inclusive high intensity threshold: Threshold at or above which some action is taken.
2899 
2900  /// enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions.
2902 
2903  /// time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation.
2905 
2906  /// enhanced resolution scan: Scan with enhanced resolution.
2908 
2909  /// isolation window attribute: Isolation window parameter.
2911 
2912  /// isolation window upper limit: The highest m/z being isolated in an isolation window.
2914 
2915  /// isolation window lower limit: The lowest m/z being isolated in an isolation window.
2917 
2918  /// no combination: Use this term if only one scan was recorded or there is no information about scans available.
2920 
2921  /// spectrum title: A free-form text title describing a spectrum.
2923 
2924  /// peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
2926 
2927  /// peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
2929 
2930  /// custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added.
2932 
2933  /// mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported.
2935 
2936  /// area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
2938 
2939  /// sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
2941 
2942  /// height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
2944 
2945  /// max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
2947 
2948  /// analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value.
2950 
2951  /// electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
2953 
2954  /// EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
2956 
2957  /// emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited.
2959 
2960  /// absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited.
2962 
2963  /// Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
2964  MS_Th_s = 1000807,
2965 
2966  /// chromatogram attribute: Chromatogram properties that are associated with a value.
2968 
2969  /// chromatogram title: A free-form text title describing a chromatogram.
2971 
2972  /// mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.
2974 
2975  /// electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time.
2977 
2978  /// EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time.
2980 
2981  /// absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time.
2983 
2984  /// emission chromatogram: The measurement of light emitted by the sample as a function of the retention time.
2986 
2987  /// counts per second: The number of counted events observed per second in one or a group of elements of a detector.
2989 
2990  /// Bruker BAF format: Bruker BAF raw file format.
2992 
2993  /// Bruker U2 format: Bruker HyStar U2 file format.
2995 
2996  /// HyStar: Bruker software for hyphenated experiments.
2997  MS_HyStar = 1000817,
2998 
2999  /// Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
3001 
3002  /// Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
3004 
3005  /// flow rate array: A data array of flow rate measurements.
3007 
3008  /// pressure array: A data array of pressure measurements.
3010 
3011  /// temperature array: A data array of temperature measurements.
3013 
3014  /// Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
3016 
3017  /// no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format.
3019 
3020  /// Bruker FID format: Bruker FID file format.
3022 
3023  /// elution time: The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography.
3024  MS_elution_time = 1000826,
3025 
3026  /// isolation window target m/z: The primary or reference m/z about which the isolation window is defined.
3028 
3029  /// isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3031 
3032  /// isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3034 
3035  /// sample preparation: Properties of the preparation steps which took place before the measurement was performed.
3037 
3038  /// MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution.
3040 
3041  /// matrix application type: Describes the technique how the matrix is put on the sample target.
3043 
3044  /// matrix solution: Describes the chemical solution used as matrix.
3046 
3047  /// matrix solution concentration: Concentration of the chemical solution used as matrix.
3049 
3050  /// dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
3052 
3053  /// printed MALDI matrix preparation: Printed MALDI matrix preparation.
3055 
3056  /// sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
3058 
3059  /// precoated MALDI sample plate: Precoated MALDI sample plate.
3061 
3062  /// laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation.
3063  MS_laser = 1000840,
3064 
3065  /// laser attribute: Laser properties that are associated with a value.
3067 
3068  /// laser type: Type of laser used used for desorption purpose.
3069  MS_laser_type = 1000842,
3070 
3071  /// wavelength: The distance between two peaks of the emitted laser beam.
3073 
3074  /// focus diameter x: Describes the diameter of the laser beam in x direction.
3076 
3077  /// focus diameter y: Describes the diameter of the laser beam in y direction.
3079 
3080  /// pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means.
3081  MS_pulse_energy = 1000846,
3082 
3083  /// pulse duration: Describes how long the laser beam was emitted from the laser device.
3085 
3086  /// attenuation: Describes the reduction of the intensity of the laser beam energy.
3087  MS_attenuation = 1000848,
3088 
3089  /// impact angle: Describes the angle between the laser beam and the sample target.
3090  MS_impact_angle = 1000849,
3091 
3092  /// gas laser: Laser which is powered by a gaseous medium.
3093  MS_gas_laser = 1000850,
3094 
3095  /// solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states.
3097 
3098  /// dye-laser: Dye lasers use an organic dye as the gain medium.
3099  MS_dye_laser = 1000852,
3100 
3101  /// free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term.
3103 
3104  /// LTQ XL: Thermo Scientific LTQ XL MS.
3105  MS_LTQ_XL = 1000854,
3106 
3107  /// LTQ Velos: Thermo Scientific LTQ Velos MS.
3108  MS_LTQ_Velos = 1000855,
3109 
3110  /// LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
3111  MS_LTQ_Velos_ETD = 1000856,
3112 
3113  /// run attribute: Properties of the described run.
3114  MS_run_attribute = 1000857,
3115 
3116  /// fraction identifier: Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information.
3118 
3119  /// molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction.
3120  MS_molecule = 1000859,
3121 
3122  /// peptide: A compound of low molecular weight that is composed of two or more amino acids.
3123  MS_peptide = 1000860,
3124 
3125  /// chemical compound attribute: A describable property of a chemical compound.
3127 
3128  /// isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field.
3130 
3131  /// pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field.
3133 
3134  /// predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3136 
3137  /// predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3139 
3140  /// chemical compound formula: A combination of symbols used to express the chemical composition of a compound.
3142 
3143  /// empirical formula: A chemical formula which expresses the proportions of the elements present in a substance.
3145 
3146  /// molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked.
3148 
3149  /// structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other.
3151 
3152  /// SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string.
3153  MS_SMILES_string = 1000868,
3154 
3155  /// collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
3157 
3158  /// 4000 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
3160 
3161  /// SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs.
3162  MS_SRM_software = 1000871,
3163 
3164  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3165  MS_MaRiMba = 1000872,
3166 
3167  /// peptide attribute calculation software: Software used to predict or calculate numerical attributes of peptides.
3169 
3170  /// SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence.
3171  MS_SSRCalc = 1000874,
3172 
3173  /// declustering potential: Potential difference between the orifice and the skimmer in volts.
3175 
3176  /// cone voltage: Potential difference between the sampling cone/orifice in volts.
3177  MS_cone_voltage = 1000876,
3178 
3179  /// tube lens voltage: Potential difference setting of the tube lens in volts.
3181 
3182  /// external reference identifier: An identifier/accession number to an external reference database.
3184 
3185  /// PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
3187 
3188  /// interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched.
3190 
3191  /// chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight.
3193 
3194  /// protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein.
3195  MS_protein = 1000882,
3196 
3197  /// protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
3199 
3200  /// protein attribute: An nonphysical attribute describing a specific protein.
3202 
3203  /// protein accession: Accession number for a specific protein in a database.
3205 
3206  /// protein name: A long name describing the function of the protein.
3207  MS_protein_name = 1000886,
3208 
3209  /// peptide attribute: A nonphysical attribute that can be used to describe a peptide.
3211 
3212  /// unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present.
3214 
3215  /// modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present.
3217 
3218  /// peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled.
3220 
3221  /// heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isotopes.
3223 
3224  /// unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3226 
3227  /// light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3229 
3230  /// peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label.
3232 
3233  /// retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column.
3235 
3236  /// local retention time: A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup.
3238 
3239  /// normalized retention time: A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup.
3241 
3242  /// predicted retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application.
3244 
3245  /// standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence.
3246  MS_standard = 1000898,
3247 
3248  /// de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard.
3250 
3251  /// minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result.
3253 
3254  /// retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column.
3256 
3257  /// H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column.
3259 
3260  /// product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
3262 
3263  /// product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z.
3265 
3266  /// percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries.
3268 
3269  /// peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
3271 
3272  /// peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant.
3274 
3275  /// transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3276  MS_transition = 1000908,
3277 
3278  /// reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3280 
3281  /// transition validation method: The strategy used to validate that a transition is effective.
3283 
3284  /// transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined.
3286 
3287  /// transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS/MS spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term.
3289 
3290  /// transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS/MS spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad).
3292 
3293  /// transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence.
3295 
3296  /// tab delimited text format: A file format that has two or more columns of tabular data where each column is separated by a TAB character.
3298 
3299  /// retention time window attribute: An attribute of a window in time about which a peptide might elute from the column.
3301 
3302  /// retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time.
3304 
3305  /// retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time.
3307 
3308  /// target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically.
3309  MS_target_list = 1000918,
3310 
3311  /// target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other.
3313 
3314  /// includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict.
3316 
3317  /// excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict.
3319 
3320  /// Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington.
3321  MS_Skyline = 1000922,
3322 
3323  /// TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology.
3324  MS_TIQAM = 1000923,
3325 
3326  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3328 
3329  /// ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology.
3330  MS_ATAQS = 1000925,
3331 
3332  /// product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1.
3334 
3335  /// ion injection time: The length of time spent filling an ion trapping device.
3337 
3338  /// calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample.
3340 
3341  /// Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger.
3343 
3344  /// Shimadzu Biotech database entity: Shimadzu Biotech format.
3346 
3347  /// QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
3348  MS_QTRAP_5500 = 1000931,
3349 
3350  /// TripleTOF 5600: AB SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
3352 
3353  /// protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation.
3355 
3356  /// gene name: Name of the gene from which the protein is translated.
3357  MS_gene_name = 1000934,
3358 
3359  /// spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra.
3361 
3362  /// SEQUEST:CleavesAt:
3364 
3365  /// SEQUEST:ViewCV: SEQUEST View Input Parameters.
3367 
3368  /// SEQUEST:OutputLines: Number of peptide results to show.
3370 
3371  /// SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
3373 
3374  /// de novo search: A de novo sequencing search (without database).
3376 
3377  /// search database details: Details about the database searched.
3379 
3380  /// database source: The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other).
3382 
3383  /// database name: The name of the search database (nr, SwissProt or est_human).
3384  MS_database_name = 1001013,
3385 
3386  /// database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.
3388 
3389  /// database original uri: URI, from where the search database was originally downloaded.
3391 
3392  /// database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.
3394 
3395  /// database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.
3397 
3398  /// database type: Database containing amino acid or nucleic acid sequences.
3399  MS_database_type = 1001018,
3400 
3401  /// database filtering: Was there filtering used on the database.
3403 
3404  /// DB filter taxonomy: A taxonomy filter was to the database search.
3406 
3407  /// DB filter on accession numbers: Filtering applied specifically by accession number pattern.
3409 
3410  /// DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value.
3411  MS_DB_MW_filter = 1001022,
3412 
3413  /// DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value.
3414  MS_DB_PI_filter = 1001023,
3415 
3416  /// translation frame: The translated open reading frames from a nucleotide database considered in the search (range: 1-6).
3418 
3419  /// translation table: The translation table used to translate the nucleotides to amino acids.
3421 
3422  /// SEQUEST:NormalizeXCorrValues:
3424 
3425  /// DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
3427 
3428  /// SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.
3430 
3431  /// number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering.
3433 
3434  /// number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
3436 
3437  /// spectral library search: A search using a library of spectra.
3439 
3440  /// SEQUEST:SequencePartialFilter:
3442 
3443  /// date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run.
3445 
3446  /// search time taken: The time taken to complete the search in seconds.
3448 
3449  /// SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
3451 
3452  /// SEQUEST:Consensus: Specify depth as value of the CVParam.
3454 
3455  /// intermediate analysis format: Type of the source file, the mzIdentML was created from.
3457 
3458  /// SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
3460 
3461  /// SEQUEST:LimitTo: Specify \"number of dtas shown\" as value of the CVParam.
3463 
3464  /// cleavage agent details: Details of cleavage agent (enzyme).
3466 
3467  /// cleavage agent name: The name of the cleavage agent.
3469 
3470  /// SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation score.
3472 
3473  /// SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M.
3475 
3476  /// SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
3478 
3479  /// SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.
3481 
3482  /// SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.
3484 
3485  /// multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any.
3487 
3488  /// SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino acid.
3490 
3491  /// SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.
3493 
3494  /// modification parameters: Modification parameters for the search engine run.
3496 
3497  /// modification specificity rule: The specificity rules for the modifications applied by the search engine.
3499 
3500  /// tolerance on types: OBSOLETE: Tolerance on types.
3502 
3503  /// quality estimation by manual validation: The quality estimation was done manually.
3505 
3506  /// SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide).
3508 
3509  /// quality estimation method details: Method for quality estimation (manually or with decoy database).
3511 
3512  /// neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
3514 
3515  /// Mascot MGF format: Mascot MGF file format.
3517 
3518  /// TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms.
3520 
3521  /// ions series considered in search: The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine.
3523 
3524  /// SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
3526 
3527  /// SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
3529 
3530  /// SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
3532 
3533  /// SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
3535 
3536  /// SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.
3538 
3539  /// database type amino acid: Database contains amino acid sequences.
3541 
3542  /// database type nucleotide: Database contains nucleic acid sequences.
3544 
3545  /// search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS-MS).
3546  MS_search_type = 1001080,
3547 
3548  /// pmf search: A peptide mass fingerprint search.
3549  MS_pmf_search = 1001081,
3550 
3551  /// tag search: A sequence tag search.
3552  MS_tag_search = 1001082,
3553 
3554  /// ms-ms search: An ms/ms search (with fragment ions).
3555  MS_ms_ms_search = 1001083,
3556 
3557  /// database nr: Non-redundant GenBank sequence database.
3558  MS_database_nr = 1001084,
3559 
3560  /// protein result details: Protein level information.
3562 
3563  /// SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
3565 
3566  /// SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
3568 
3569  /// protein description: The protein description line from the sequence entry in the source database FASTA file.
3571 
3572  /// molecule taxonomy: The taxonomy of the resultant molecule from the search.
3574 
3575  /// taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT).
3577 
3578  /// NoEnzyme:
3580 
3581  /// peptide identification confidence metric: Identification confidence metric for a peptide.
3583 
3584  /// sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated).
3586 
3587  /// SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
3589 
3590  /// SEQUEST:ProcessAll:
3592 
3593  /// SEQUEST:TopPercentMostIntense: Specify \"percentage\" as value of the CVParam.
3595 
3596  /// distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold.
3598 
3599  /// confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.
3601 
3602  /// confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than.
3604 
3605  /// confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere.
3607 
3608  /// protein group or subset relationship: Protein group or subset relationships.
3610 
3611  /// SEQUEST:Chromatogram:
3613 
3614  /// SEQUEST:InfoAndLog:
3616 
3617  /// database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
3619 
3620  /// peptide result details: Peptide level information.
3622 
3623  /// SEQUEST:TopNumber: Specify \"number\" as value of the CVParam.
3625 
3626  /// data stored in database: Source file for this mzIdentML was a data set in a database.
3628 
3629  /// param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.
3630  MS_param__a_ion = 1001108,
3631 
3632  /// SEQUEST:CullTo: Specify cull string as value of the CVParam.
3634 
3635  /// SEQUEST:modeCV: SEQUEST Mode Input Parameters.
3637 
3638  /// SEQUEST:Full:
3639  MS_SEQUEST_Full = 1001111,
3640 
3641  /// n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein.
3643 
3644  /// c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein.
3646 
3647  /// retention time(s): Retention time of the spectrum from the source file.
3649 
3650  /// scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
3652 
3653  /// single protein result details: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group).
3655 
3656  /// theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications).
3658 
3659  /// param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.
3660  MS_param__b_ion = 1001118,
3661 
3662  /// param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.
3663  MS_param__c_ion = 1001119,
3664 
3665  /// SEQUEST:FormatAndLinks:
3667 
3668  /// number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count.
3670 
3671  /// ions series considered: The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb).
3673 
3674  /// number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't.
3676 
3677  /// number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine.
3679 
3680  /// manual validation: Result of quality estimation: decision of a manual validation.
3682 
3683  /// SEQUEST:Fast:
3684  MS_SEQUEST_Fast = 1001126,
3685 
3686  /// peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide.
3688 
3689  /// SEQUEST:selectCV: SEQUEST Select Input Parameters.
3691 
3692  /// quantification information: Quantification information.
3694 
3695  /// peptide raw area: Peptide raw area.
3697 
3698  /// error on peptide area: Error on peptide area.
3700 
3701  /// peptide ratio: Peptide ratio.
3702  MS_peptide_ratio = 1001132,
3703 
3704  /// error on peptide ratio: Error on peptide ratio.
3706 
3707  /// protein ratio: Protein ratio.
3708  MS_protein_ratio = 1001134,
3709 
3710  /// error on protein ratio: Error on protein ratio.
3712 
3713  /// p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
3715 
3716  /// absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample.
3718 
3719  /// error on absolute quantity: Error on absolute quantity.
3721 
3722  /// quantitation software name: Quantitation software name.
3724 
3725  /// quantitation software version: Quantitation software version.
3727 
3728  /// intensity of precursor ion: The intensity of the precursor ion.
3730 
3731  /// database IPI_human: International Protein Index database for Homo sapiens sequences.
3733 
3734  /// search engine specific score for PSMs: Search engine specific peptide spectrum match scores.
3736 
3737  /// SEQUEST:SelectDefault:
3739 
3740  /// SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
3742 
3743  /// param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammonia.
3745 
3746  /// protein ambiguity group result details:
3748 
3749  /// param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
3751 
3752  /// param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammonia.
3754 
3755  /// param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
3757 
3758  /// param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammonia.
3760 
3761  /// param: y ion-H2O DEPRECATED:
3763 
3764  /// search engine specific score: Search engine specific scores.
3766 
3767  /// SEQUEST:probability: The SEQUEST result 'Probability'.
3769 
3770  /// SEQUEST:xcorr: The SEQUEST result 'XCorr'.
3771  MS_SEQUEST_xcorr = 1001155,
3772 
3773  /// SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
3775 
3776  /// SEQUEST:sp: The SEQUEST result 'Sp' (protein).
3777  MS_SEQUEST_sp = 1001157,
3778 
3779  /// SEQUEST:Uniq:
3780  MS_SEQUEST_Uniq = 1001158,
3781 
3782  /// SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
3784 
3785  /// SEQUEST:sf: The SEQUEST result 'Sf'.
3786  MS_SEQUEST_sf = 1001160,
3787 
3788  /// SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
3790 
3791  /// SEQUEST:total ions: The SEQUEST result 'Total Ions'.
3793 
3794  /// SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
3796 
3797  /// Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
3799 
3800  /// Paragon:total protscore: The Paragon result 'Total ProtScore'.
3802 
3803  /// Paragon:score: The Paragon result 'Score'.
3804  MS_Paragon_score = 1001166,
3805 
3806  /// Paragon:confidence: The Paragon result 'Confidence'.
3808 
3809  /// Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
3811 
3812  /// Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
3814 
3815  /// Paragon:contrib: The Paragon result 'Contrib'.
3817 
3818  /// Mascot:score: The Mascot result 'Score'.
3819  MS_Mascot_score = 1001171,
3820 
3821  /// Mascot:expectation value: The Mascot result 'expectation value'.
3823 
3824  /// Mascot:matched ions: The Mascot result 'Matched ions'.
3826 
3827  /// Mascot:total ions: The Mascot result 'Total ions'.
3829 
3830  /// peptide shared in multiple proteins: A peptide matching multiple proteins.
3832 
3833  /// (?<=[KR])(?!P): Regular expression for Trypsin.
3835 
3836  /// number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search.
3838 
3839  /// database EST: Expressed sequence tag nucleotide sequence database.
3840  MS_database_EST = 1001178,
3841 
3842  /// Cleavage agent regular expression: Regular expressions for cleavage enzymes.
3844 
3845  /// search statistics: The details of the actual run of the search.
3847 
3848  /// modification specificity peptide N-term: As parameter for search engine: apply the modification only at the N-terminus of a peptide.
3850 
3851  /// modification specificity peptide C-term: As parameter for search engine: apply the modification only at the C-terminus of a peptide.
3853 
3854  /// p-value: Quality estimation by p-value.
3856 
3857  /// Expect value: Result of quality estimation: Expect value.
3858  MS_Expect_value = 1001192,
3859 
3860  /// confidence score: Result of quality estimation: confidence score.
3862 
3863  /// quality estimation with decoy database: Quality estimation by decoy database.
3865 
3866  /// decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
3868 
3869  /// decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass).
3871 
3872  /// DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries.
3874 
3875  /// protein identification confidence metric: Identification confidence metric for a protein.
3877 
3878  /// Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
3880 
3881  /// SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
3883 
3884  /// DB MW filter maximum: Maximum value of molecular weight filter.
3886 
3887  /// DB MW filter minimum: Minimum value of molecular weight filter.
3889 
3890  /// DB PI filter maximum: Maximum value of isoelectric point filter.
3892 
3893  /// DB PI filter minimum: Minimum value of isoelectric point filter.
3895 
3896  /// Mascot: The name of the Mascot search engine.
3897  MS_Mascot = 1001207,
3898 
3899  /// SEQUEST: The name of the SEQUEST search engine.
3900  MS_SEQUEST = 1001208,
3901 
3902  /// Phenyx: The name of the Phenyx search engine.
3903  MS_Phenyx = 1001209,
3904 
3905  /// mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average).
3907 
3908  /// parent mass type mono: Mass type setting for parent mass was monoisotopic.
3910 
3911  /// parent mass type average: Mass type setting for parent mass was average isotopic.
3913 
3914  /// search result details: OBSOLETE: Scores and global result characteristics.
3916 
3917  /// protein-level global FDR: Estimation of the global false discovery rate of proteins.
3919 
3920  /// SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
3922 
3923  /// SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.
3925 
3926  /// SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
3928 
3929  /// SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
3931 
3932  /// frag: y ion: Fragmentation information, type of product: y ion.
3933  MS_frag__y_ion = 1001220,
3934 
3935  /// fragmentation information: Fragmentation information like ion types.
3937 
3938  /// frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
3940 
3941  /// frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
3943 
3944  /// frag: b ion: Fragmentation information, type of product: b ion.
3945  MS_frag__b_ion = 1001224,
3946 
3947  /// product ion m/z: The m/z of the product ion.
3949 
3950  /// fragment ion m/z (product ion m/z): The m/z of the product ion.
3952 
3953  /// product ion intensity: The intensity of a single product ion.
3955 
3956  /// fragment ion intensity (product ion intensity): The intensity of a single product ion.
3958 
3959  /// product ion m/z error: The product ion m/z error.
3961 
3962  /// frag: x ion: Fragmentation information, type of product: x ion.
3963  MS_frag__x_ion = 1001228,
3964 
3965  /// frag: a ion: Fragmentation information, type of product: a ion.
3966  MS_frag__a_ion = 1001229,
3967 
3968  /// frag: z ion: Fragmentation information, type of product: z ion.
3969  MS_frag__z_ion = 1001230,
3970 
3971  /// frag: c ion: Fragmentation information, type of product: c ion.
3972  MS_frag__c_ion = 1001231,
3973 
3974  /// frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.
3976 
3977  /// frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.
3979 
3980  /// frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
3982 
3983  /// frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.
3985 
3986  /// frag: d ion: Fragmentation information, type of product: d ion.
3987  MS_frag__d_ion = 1001236,
3988 
3989  /// frag: v ion: Fragmentation information, type of product: v ion.
3990  MS_frag__v_ion = 1001237,
3991 
3992  /// frag: w ion: Fragmentation information, type of product: w ion.
3993  MS_frag__w_ion = 1001238,
3994 
3995  /// frag: immonium ion: Fragmentation information, type of product: immonium ion.
3997 
3998  /// non-identified ion: Non-identified ion.
4000 
4001  /// co-eluting ion: Co-eluting ion.
4003 
4004  /// SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.
4006 
4007  /// SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
4009 
4010  /// PerSeptive PKS format: PerSeptive peak list file format.
4012 
4013  /// Sciex API III format: PE Sciex peak list file format.
4015 
4016  /// Bruker XML format: Bruker data exchange XML format.
4018 
4019  /// search input details: Details describing the search input.
4021 
4022  /// local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
4023  MS_local_FDR = 1001250,
4024 
4025  /// Trypsin: Enzyme trypsin.
4026  MS_Trypsin = 1001251,
4027 
4028  /// DB source EBI: Database source EBI.
4029  MS_DB_source_EBI = 1001252,
4030 
4031  /// DB source NCBI: Database source NCBI.
4033 
4034  /// DB source UniProt: Database source UniProt.
4036 
4037  /// fragment mass type average: Mass type setting for fragment mass was average isotopic.
4039 
4040  /// fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
4042 
4043  /// param: v ion: Parameter information, type of product: side chain loss v ion.
4044  MS_param__v_ion = 1001257,
4045 
4046  /// param: d ion: Parameter information, type of product: side chain loss d ion.
4047  MS_param__d_ion = 1001258,
4048 
4049  /// param: immonium ion: Parameter information, type of product: immonium ion.
4051 
4052  /// param: w ion: Parameter information, type of product: side chain loss w ion.
4053  MS_param__w_ion = 1001260,
4054 
4055  /// param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.
4056  MS_param__x_ion = 1001261,
4057 
4058  /// param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.
4059  MS_param__y_ion = 1001262,
4060 
4061  /// param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.
4062  MS_param__z_ion = 1001263,
4063 
4064  /// role type: Role of a Person or Organization.
4065  MS_role_type = 1001266,
4066 
4067  /// software vendor: Software vendor role.
4069 
4070  /// programmer: Programmer role.
4071  MS_programmer = 1001268,
4072 
4073  /// instrument vendor: Instrument vendor role.
4075 
4076  /// lab personnel: Lab personnel role.
4077  MS_lab_personnel = 1001270,
4078 
4079  /// researcher: Researcher role.
4080  MS_researcher = 1001271,
4081 
4082  /// (?<=R)(?!P): Regular expression for Arg-C.
4083  MS_____R____P_ = 1001272,
4084 
4085  /// (?=[BD]): Regular expression for Asp-N.
4086  MS_____BD__ = 1001273,
4087 
4088  /// (?=[DE]): Regular expression for Asp-N-ambic.
4089  MS_____DE__ = 1001274,
4090 
4091  /// ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
4093 
4094  /// ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
4096 
4097  /// decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
4099 
4100  /// decoy DB derived from: The name of the database, the search database was derived from.
4102 
4103  /// database IPI_mouse: International Protein Index database for Mus musculus sequences.
4105 
4106  /// database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
4108 
4109  /// database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
4111 
4112  /// database IPI_chicken: International Protein Index database for Gallus gallus sequences.
4114 
4115  /// database IPI_cow: International Protein Index database for Bos taurus sequences.
4117 
4118  /// database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.
4120 
4121  /// decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
4123 
4124  /// decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegicus.
4126 
4127  /// decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.
4129 
4130  /// decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabidopsis thaliana.
4132 
4133  /// decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.
4135 
4136  /// decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rerio.
4138 
4139  /// decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.
4141 
4142  /// decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gallus.
4144 
4145  /// decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.
4147 
4148  /// decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.
4150 
4151  /// protein rank: The rank of the protein in a list sorted by the search engine.
4152  MS_protein_rank = 1001301,
4153 
4154  /// search engine specific input parameter: Search engine specific input parameters.
4156 
4157  /// Arg-C: Endoproteinase Arg-C.
4158  MS_Arg_C = 1001303,
4159 
4160  /// Clostripain (Arg-C): Endoproteinase Arg-C.
4162 
4163  /// Asp-N: Endoproteinase Asp-N.
4164  MS_Asp_N = 1001304,
4165 
4166  /// Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
4167  MS_Asp_N_ambic = 1001305,
4168 
4169  /// Chymotrypsin: Enzyme chymotrypsin.
4170  MS_Chymotrypsin = 1001306,
4171 
4172  /// CNBr: Cyanogen bromide.
4173  MS_CNBr = 1001307,
4174 
4175  /// Formic_acid: Formic acid.
4176  MS_Formic_acid = 1001308,
4177 
4178  /// Lys-C: Endoproteinase Lys-C.
4179  MS_Lys_C = 1001309,
4180 
4181  /// Lys-C/P: Proteinase Lys-C/P.
4182  MS_Lys_C_P = 1001310,
4183 
4184  /// PepsinA: PepsinA proteinase.
4185  MS_PepsinA = 1001311,
4186 
4187  /// TrypChymo: Cleavage agent TrypChymo.
4188  MS_TrypChymo = 1001312,
4189 
4190  /// Trypsin/P: Cleavage agent Trypsin/P.
4191  MS_Trypsin_P = 1001313,
4192 
4193  /// V8-DE: Cleavage agent V8-DE.
4194  MS_V8_DE = 1001314,
4195 
4196  /// V8-E: Cleavage agent V8-E.
4197  MS_V8_E = 1001315,
4198 
4199  /// Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05).
4201 
4202  /// Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.
4204 
4205  /// Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
4207 
4208  /// Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed.
4210 
4211  /// Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed.
4213 
4214  /// Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed.
4216 
4217  /// Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits.
4219 
4220  /// Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use.
4222 
4223  /// Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included.
4225 
4226  /// Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database.
4228 
4229  /// add_others: OBSOLETE.
4231 
4232  /// OMSSA:evalue: OMSSA E-value.
4233  MS_OMSSA_evalue = 1001328,
4234 
4235  /// OMSSA:pvalue: OMSSA p-value.
4236  MS_OMSSA_pvalue = 1001329,
4237 
4238  /// X!Tandem:expect: The X!Tandem expectation value.
4240 
4241  /// X!Tandem:hyperscore: The X!Tandem hyperscore.
4243 
4244  /// (?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
4246 
4247  /// (?<=M): Regular expression for CNBr.
4248  MS_____M_ = 1001333,
4249 
4250  /// ((?<=D))|((?=D)): Regular expression for formic acid.
4252 
4253  /// (?<=K)(?!P): Regular expression for Lys-C.
4254  MS_____K____P_ = 1001335,
4255 
4256  /// (?<=K): Regular expression for Lys-C/P.
4257  MS_____K_ = 1001336,
4258 
4259  /// (?<=[FL]): Regular expression for PepsinA.
4260  MS______FL__ = 1001337,
4261 
4262  /// (?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
4264 
4265  /// (?<=[KR]): Regular expression for Trypsin/P.
4266  MS______KR__ = 1001339,
4267 
4268  /// (?<=[BDEZ])(?!P): Regular expression for V8-DE.
4270 
4271  /// (?<=[EZ])(?!P): Regular expression for V8-E.
4273 
4274  /// database sequence details: Details about a single database sequence.
4276 
4277  /// NA sequence: The sequence is a nucleic acid sequence.
4278  MS_NA_sequence = 1001343,
4279 
4280  /// AA sequence: The sequence is a amino acid sequence.
4281  MS_AA_sequence = 1001344,
4282 
4283  /// mass table source: Children of this term specify the source of the mass table used.
4285 
4286  /// AAIndex mass table: The masses used in the mass table are taken from AAIndex.
4288 
4289  /// database file formats: The children of this term define file formats of the sequence database used.
4291 
4292  /// FASTA format: The sequence database was stored in the FASTA format.
4293  MS_FASTA_format = 1001348,
4294 
4295  /// ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.
4296  MS_ASN_1 = 1001349,
4297 
4298  /// NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
4299  MS_NCBI___p_ = 1001350,
4300 
4301  /// clustal aln: ClustalW ALN (multiple alignment) format.
4302  MS_clustal_aln = 1001351,
4303 
4304  /// embl em: EMBL entry format.
4305  MS_embl_em = 1001352,
4306 
4307  /// NBRF PIR: The NBRF PIR was used as format.
4308  MS_NBRF_PIR = 1001353,
4309 
4310  /// mass table options: Root node for options for the mass table used.
4312 
4313  /// peptide descriptions: Descriptions of peptides.
4315 
4316  /// spectrum descriptions: Descriptions of the input spectra.
4318 
4319  /// spectrum quality descriptions: Description of the quality of the input spectrum.
4321 
4322  /// msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
4324 
4325  /// ambiguous residues: Children of this term describe ambiguous residues.
4327 
4328  /// alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard.
4330 
4331  /// alternate mass: List of masses a non-standard letter code is replaced with.
4333 
4334  /// number of unmatched peaks: The number of unmatched peaks.
4336 
4337  /// peptide unique to one protein: A peptide matching only one.
4339 
4340  /// distinct peptide-level global FDR: Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
4342 
4343  /// frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
4345 
4346  /// frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
4348 
4349  /// frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
4350  MS_frag__z_1_ion = 1001367,
4351 
4352  /// frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
4353  MS_frag__z_2_ion = 1001368,
4354 
4355  /// text format: Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS-MS) search.
4356  MS_text_format = 1001369,
4357 
4358  /// Mascot:homology threshold: The Mascot result 'homology threshold'.
4360 
4361  /// Mascot:identity threshold: The Mascot result 'identity threshold'.
4363 
4364  /// SEQUEST:Sequences:
4366 
4367  /// SEQUEST:TIC: SEQUEST total ion current.
4368  MS_SEQUEST_TIC = 1001373,
4369 
4370  /// SEQUEST:Sum:
4371  MS_SEQUEST_Sum = 1001374,
4372 
4373  /// Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
4375 
4376  /// Phenyx:Scoring Model: The selected scoring model in Phenyx.
4378 
4379  /// Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
4381 
4382  /// Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct.
4384 
4385  /// Phenyx:Turbo: The turbo mode parameter in Phenyx.
4386  MS_Phenyx_Turbo = 1001379,
4387 
4388  /// Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx.
4390 
4391  /// Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.
4393 
4394  /// Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
4396 
4397  /// Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identification in Phenyx.
4399 
4400  /// Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx.
4402 
4403  /// Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx.
4405 
4406  /// Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx.
4408 
4409  /// Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used.
4411 
4412  /// Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
4413  MS_Phenyx_AC = 1001388,
4414 
4415  /// Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
4416  MS_Phenyx_ID = 1001389,
4417 
4418  /// Phenyx:Score: The protein score of a protein match in Phenyx.
4419  MS_Phenyx_Score = 1001390,
4420 
4421  /// Phenyx:Peptides1: First number of phenyx result \"#Peptides\".
4423 
4424  /// Phenyx:Peptides2: Second number of phenyx result \"#Peptides\".
4426 
4427  /// Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
4428  MS_Phenyx_Auto = 1001393,
4429 
4430  /// Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
4431  MS_Phenyx_User = 1001394,
4432 
4433  /// Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
4435 
4436  /// Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
4438 
4439  /// Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
4441 
4442  /// Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx.
4443  MS_Phenyx_Modif = 1001398,
4444 
4445  /// OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
4447 
4448  /// OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
4450 
4451  /// X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
4453 
4454  /// spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results.
4456 
4457  /// param: internal yb ion: Parameter information, type of product: internal yb ion.
4459 
4460  /// param: internal ya ion: Parameter information, type of product: internal ya ion.
4462 
4463  /// param: z+1 ion: Parameter information, type of product: z+1 ion.
4465 
4466  /// param: z+2 ion: Parameter information, type of product: z+2 ion.
4468 
4469  /// translation start codons: The translation start codons used to translate the nucleotides to amino acids.
4471 
4472  /// search tolerance specification: Specification of the search tolerance.
4474 
4475  /// search tolerance plus value:
4477 
4478  /// search tolerance minus value:
4480 
4481  /// MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file.
4483 
4484  /// MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file.
4486 
4487  /// spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE.
4489 
4490  /// SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
4491  MS_SpectraST_dot = 1001417,
4492 
4493  /// SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
4495 
4496  /// SpectraST:discriminant score F: SpectraST spectrum score.
4498 
4499  /// SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
4501 
4502  /// pepXML format: Source file for this mzIdentML was in a pepXML file format.
4503  MS_pepXML_format = 1001421,
4504 
4505  /// protXML format: Source file for this mzIdentML was in protXML file format.
4507 
4508  /// translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids.
4510 
4511  /// ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
4513 
4514  /// ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated.
4516 
4517  /// ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.
4519 
4520  /// ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.
4522 
4523  /// ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
4525 
4526  /// ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.
4528 
4529  /// ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score.
4531 
4532  /// ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score.
4534 
4535  /// ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation.
4537 
4538  /// ProteinExtractor:MascotUseIdentityScore:
4540 
4541  /// ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4543 
4544  /// ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score.
4546 
4547  /// ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score.
4549 
4550  /// ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation.
4552 
4553  /// ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4555 
4556  /// ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4558 
4559  /// ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4561 
4562  /// ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation.
4564 
4565  /// ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4567 
4568  /// ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score.
4570 
4571  /// ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score.
4573 
4574  /// ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation.
4576 
4577  /// ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4579 
4580  /// prot:FDR threshold: False-discovery rate threshold for proteins.
4582 
4583  /// pep:FDR threshold: False-discovery rate threshold for peptides.
4585 
4586  /// OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
4588 
4589  /// decoy DB details: Details of decoy generation and database structure.
4591 
4592  /// decoy DB generation algorithm: Name of algorithm used for decoy generation.
4594 
4595  /// decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
4597 
4598  /// DB composition only decoy: Decoy database composition: database contains only decoy entries.
4600 
4601  /// quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy).
4603 
4604  /// acquisition software: Acquisition software.
4606 
4607  /// analysis software: Analysis software.
4609 
4610  /// data processing software: Data processing software.
4612 
4613  /// spectrum generation information: Vocabularies describing the spectrum generation information.
4615 
4616  /// file format: Format of data files.
4617  MS_file_format = 1001459,
4618 
4619  /// unknown modification: This term should be given if the modification was unknown.
4621 
4622  /// greylag: Greylag identification software.
4623  MS_greylag = 1001461,
4624 
4625  /// PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
4626  MS_PEFF_format = 1001462,
4627 
4628  /// Phenyx XML format: Phenyx open XML file format.
4630 
4631  /// DTASelect format: DTASelect file format.
4633 
4634  /// MS2 format: MS2 file format for MS/MS spectral data.
4635  MS_MS2_format = 1001466,
4636 
4637  /// taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
4639 
4640  /// taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4642 
4643  /// taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4645 
4646  /// taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4648 
4649  /// peptide modification details: The children of this term can be used to describe modifications.
4651 
4652  /// selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4654 
4655  /// SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4657 
4658  /// selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4660 
4661  /// SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4663 
4664  /// consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4666 
4667  /// CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4669 
4670  /// OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
4671  MS_OMSSA = 1001475,
4672 
4673  /// X!Tandem: X!Tandem was used to analyze the spectra.
4674  MS_X_Tandem = 1001476,
4675 
4676  /// SpectraST: SpectraST was used to analyze the spectra.
4677  MS_SpectraST = 1001477,
4678 
4679  /// Mascot Parser: Mascot Parser was used to analyze the spectra.
4680  MS_Mascot_Parser = 1001478,
4681 
4682  /// null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte.
4684 
4685  /// AB SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger.
4687 
4688  /// AB SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
4690 
4691  /// TOF/TOF 5800: AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX TOF/TOF 5800 Analyzer.
4692  MS_TOF_TOF_5800 = 1001482,
4693 
4694  /// AB SCIEX TOF/TOF Series Explorer Software: AB SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis.
4696 
4697  /// intensity normalization: Normalization of data point intensities.
4699 
4700  /// m/z calibration: Calibration of data point m/z positions.
4702 
4703  /// data filtering: Filtering out part of the data.
4705 
4706  /// ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape.
4708 
4709  /// Mascot Distiller: Mascot Distiller.
4711 
4712  /// Mascot Integra: Mascot Integra.
4714 
4715  /// Percolator: Percolator.
4716  MS_Percolator = 1001490,
4717 
4718  /// percolator:Q value: Percolator:Q value.
4720 
4721  /// percolator:score: Percolator:score.
4723 
4724  /// percolator:PEP: Posterior error probability.
4726 
4727  /// no threshold: In case no threshold was used.
4728  MS_no_threshold = 1001494,
4729 
4730  /// ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database.
4732 
4733  /// ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
4735 
4736  /// ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
4738 
4739  /// Profound:z value: The Profound z value.
4741 
4742  /// Profound:Cluster: The Profound cluster score.
4744 
4745  /// Profound:ClusterRank: The Profound cluster rank.
4747 
4748  /// MSFit:Mowse score: The MSFit Mowse score.
4750 
4751  /// Sonar:Score: The Sonar score.
4752  MS_Sonar_Score = 1001502,
4753 
4754  /// ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
4756 
4757  /// ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
4759 
4760  /// ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape.
4762 
4763  /// ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores.
4765 
4766  /// ProteinExtractor:Score: The score calculated by ProteinExtractor.
4768 
4769  /// Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
4771 
4772  /// Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.
4774 
4775  /// TSQ Vantage: TSQ Vantage.
4776  MS_TSQ_Vantage = 1001510,
4777 
4778  /// Sequence database filter types: Filter types which are used to filter a sequence database.
4780 
4781  /// Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
4783 
4784  /// DB sequence filter pattern: DB sequence filter pattern.
4786 
4787  /// DB accession filter string: DB accession filter string.
4789 
4790  /// frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
4792 
4793  /// frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
4795 
4796  /// frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
4798 
4799  /// frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
4801 
4802  /// frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
4804 
4805  /// frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
4807 
4808  /// frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
4810 
4811  /// frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
4813 
4814  /// frag: precursor ion: Fragmentation information, type of product: precursor ion.
4816 
4817  /// fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4819 
4820  /// precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4822 
4823  /// spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
4825 
4826  /// Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
4828 
4829  /// Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
4831 
4832  /// spectra data details: Child-terms contain information to map the results back to spectra.
4834 
4835  /// mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
4837 
4838  /// spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
4840 
4841  /// spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
4843 
4844  /// Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
4846 
4847  /// Bruker Daltonics flex series: Bruker Daltonics' flex series.
4849 
4850  /// Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
4852 
4853  /// Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
4855 
4856  /// BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
4857  MS_BioTOF = 1001537,
4858 
4859  /// BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
4860  MS_BioTOF_III = 1001538,
4861 
4862  /// UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
4863  MS_UltroTOF_Q = 1001539,
4864 
4865  /// micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
4866  MS_micrOTOF_II = 1001540,
4867 
4868  /// maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
4869  MS_maXis = 1001541,
4870 
4871  /// amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
4872  MS_amaZon_ETD = 1001542,
4873 
4874  /// microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
4875  MS_microflex_LRF = 1001543,
4876 
4877  /// ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
4879 
4880  /// Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
4882 
4883  /// amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
4884  MS_amaZon_X = 1001546,
4885 
4886  /// Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
4888 
4889  /// Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
4891 
4892  /// solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
4893  MS_solariX = 1001549,
4894 
4895  /// microflex II: Bruker Daltonics' microflex II: MALDI TOF.
4896  MS_microflex_II = 1001550,
4897 
4898  /// autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
4900 
4901  /// autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
4903 
4904  /// autoflex: Bruker Daltonics' autoflex: MALDI TOF.
4905  MS_autoflex = 1001555,
4906 
4907  /// Bruker Daltonics apex series: Bruker Daltonics' apex series.
4909 
4910  /// Shimadzu Corporation software: Shimadzu Corporation software.
4912 
4913  /// MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
4915 
4916  /// AB SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
4918 
4919  /// AB SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.
4921 
4922  /// Scaffold: Scaffold analysis software.
4923  MS_Scaffold = 1001561,
4924 
4925  /// Scaffold nativeID format: Scaffold native ID format.
4927 
4928  /// SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
4930 
4931  /// Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
4933 
4934  /// IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
4936 
4937  /// ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.
4939 
4940  /// SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format.
4942 
4943  /// Scaffold:Peptide Probability: Scaffold peptide probability score.
4945 
4946  /// IdentityE Score: Waters IdentityE peptide score.
4948 
4949  /// ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
4951 
4952  /// ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
4954 
4955  /// SpectrumMill:Score: Spectrum mill peptide score.
4957 
4958  /// SpectrumMill:SPI: SpectrumMill SPI score (%).
4960 
4961  /// report only spectra assigned to identified proteins: Flag indicating to report only the spectra assigned to identified proteins.
4963 
4964  /// Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
4966 
4967  /// Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted.
4969 
4970  /// Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring.
4972 
4973  /// minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be accepted.
4975 
4976  /// Scaffold:Protein Probability: Scaffold protein probability score.
4978 
4979  /// SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
4981 
4982  /// FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
4984 
4985  /// FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
4987 
4988  /// XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
4989  MS_XCMS = 1001582,
4990 
4991  /// MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.
4992  MS_MaxQuant = 1001583,
4993 
4994  /// combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS/MS (aka Peptide Fragment Fingerprint - PFF).
4996 
4997  /// MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
4998  MS_MyriMatch = 1001585,
4999 
5000  /// DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
5001  MS_DirecTag = 1001586,
5002 
5003  /// TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
5004  MS_TagRecon = 1001587,
5005 
5006  /// Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
5007  MS_Pepitome = 1001588,
5008 
5009  /// MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5010  MS_MyriMatch_MVH = 1001589,
5011 
5012  /// Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5014 
5015  /// TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5017 
5018  /// MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5020 
5021  /// Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5023 
5024  /// TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5026 
5027  /// anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins.
5029 
5030  /// family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches.
5032 
5033  /// group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein.
5035 
5036  /// sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences.
5038 
5039  /// spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra.
5041 
5042  /// sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches.
5044 
5045  /// spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches.
5047 
5048  /// sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins.
5050 
5051  /// spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins.
5053 
5054  /// protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
5056 
5057  /// ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
5059 
5060  /// ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format) file.
5062 
5063  /// ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
5065 
5066  /// ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
5068 
5069  /// ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
5071 
5072  /// ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
5074 
5075  /// ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
5077 
5078  /// ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
5080 
5081  /// ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow.
5083 
5084  /// ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS/MS=MS2 ... MS10).
5086 
5087  /// ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
5089 
5090  /// ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3).
5092 
5093  /// ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
5095 
5096  /// ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)).
5098 
5099  /// ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value.
5101 
5102  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header.
5104 
5105  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header.
5107 
5108  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header.
5110 
5111  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header.
5113 
5114  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header.
5116 
5117  /// ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
5119 
5120  /// ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors.
5122 
5123  /// ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss.
5125 
5126  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed.
5128 
5129  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra.
5131 
5132  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra.
5134 
5135  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum.
5137 
5138  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS/MS input spectra are removed.
5140 
5141  /// ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type.
5143 
5144  /// ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together.
5146 
5147  /// ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species.
5149 
5150  /// ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis.
5152 
5153  /// ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data.
5155 
5156  /// ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5158 
5159  /// ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data.
5161 
5162  /// ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5164 
5165  /// ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum.
5167 
5168  /// ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted).
5170 
5171  /// ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid.
5173 
5174  /// ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
5176 
5177  /// ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
5179 
5180  /// ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
5182 
5183  /// ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out.
5185 
5186  /// ProteomeDiscoverer:Dynamic Modifications: Determine dynamic post-translational modifications (PTMs).
5188 
5189  /// ProteomeDiscoverer:Static Modifications: Static Modification to all occurrences of a named amino acid.
5191 
5192  /// ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database.
5194 
5195  /// ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
5197 
5198  /// ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte.
5200 
5201  /// ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
5203 
5204  /// ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search.
5206 
5207  /// ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
5209 
5210  /// ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
5212 
5213  /// ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds.
5215 
5216  /// ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
5218 
5219  /// ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu.
5221 
5222  /// Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
5224 
5225  /// ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest.
5227 
5228  /// ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported.
5230 
5231  /// ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species.
5233 
5234  /// ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported.
5236 
5237  /// ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
5239 
5240  /// ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report.
5242 
5243  /// ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence.
5245 
5246  /// ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence.
5248 
5249  /// ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species.
5251 
5252  /// ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
5254 
5255  /// Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
5257 
5258  /// ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported.
5260 
5261  /// ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match.
5263 
5264  /// ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search.
5266 
5267  /// ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained.
5269 
5270  /// ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have.
5272 
5273  /// ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance.
5275 
5276  /// ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum.
5278 
5279  /// ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
5281 
5282  /// ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly.
5284 
5285  /// ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search.
5287 
5288  /// ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search.
5290 
5291  /// ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search.
5293 
5294  /// ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score.
5296 
5297  /// ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report.
5299 
5300  /// ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database.
5302 
5303  /// ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
5305 
5306  /// ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching.
5308 
5309  /// ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching.
5311 
5312  /// ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching.
5314 
5315  /// ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching.
5317 
5318  /// ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor.
5320 
5321  /// ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor.
5323 
5324  /// ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor.
5326 
5327  /// ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor.
5329 
5330  /// ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor.
5332 
5333  /// ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor.
5335 
5336  /// ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor.
5338 
5339  /// ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor.
5341 
5342  /// ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor.
5344 
5345  /// ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported.
5347 
5348  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window.
5350 
5351  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks.
5353 
5354  /// ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation.
5356 
5357  /// ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData).
5359 
5360  /// ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data.
5362 
5363  /// ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search.
5365 
5366  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1.
5368 
5369  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2.
5371 
5372  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3.
5374 
5375  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4.
5377 
5378  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1.
5380 
5381  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2.
5383 
5384  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3.
5386 
5387  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4.
5389 
5390  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1.
5392 
5393  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2.
5395 
5396  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3.
5398 
5399  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4.
5401 
5402  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1.
5404 
5405  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2.
5407 
5408  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3.
5410 
5411  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4.
5413 
5414  /// ProteomeDiscoverer:1. Dynamic Modification: Determine 1st dynamic post-translational modifications (PTMs).
5416 
5417  /// ProteomeDiscoverer:2. Dynamic Modification: Determine 2nd dynamic post-translational modifications (PTMs).
5419 
5420  /// ProteomeDiscoverer:3. Dynamic Modification: Determine 3rd dynamic post-translational modifications (PTMs).
5422 
5423  /// ProteomeDiscoverer:4. Dynamic Modification: Determine 4th dynamic post-translational modifications (PTMs).
5425 
5426  /// ProteomeDiscoverer:Static Modification for X: Static Modification for X.
5428 
5429  /// ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis.
5431 
5432  /// ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability.
5434 
5435  /// ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability.
5437 
5438  /// ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
5440 
5441  /// ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
5443 
5444  /// ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
5446 
5447  /// ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
5449 
5450  /// ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
5452 
5453  /// ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities).
5455 
5456  /// ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
5458 
5459  /// ProteomeDiscoverer:Reference Database: Full path database name.
5461 
5462  /// ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
5464 
5465  /// ProteomeDiscoverer:Source file extension: File type (if not pepXML).
5467 
5468  /// ProteomeDiscoverer:Source Files: Input pepXML files.
5470 
5471  /// ProteomeDiscoverer:Source Files old: Input pepXML files (old).
5473 
5474  /// ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
5476 
5477  /// ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
5479 
5480  /// LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
5482 
5483  /// ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
5485 
5486  /// ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
5488 
5489  /// ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
5491 
5492  /// ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
5494 
5495  /// ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
5497 
5498  /// ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
5500 
5501  /// ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
5503 
5504  /// ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
5506 
5507  /// ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
5509 
5510  /// ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation.
5512 
5513  /// ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only).
5515 
5516  /// ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches.
5518 
5519  /// contact phone number: Phone number of the contact person or organization.
5521 
5522  /// contact fax number: Fax number for the contact person or organization.
5524 
5525  /// contact toll-free phone number: Toll-free phone number of the contact person or organization.
5527 
5528  /// Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology').
5530 
5531  /// Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering').
5533 
5534  /// Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'.
5536 
5537  /// ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
5538  MS_ACQUITY_UPLC = 1001761,
5539 
5540  /// ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
5542 
5543  /// ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
5545 
5546  /// ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
5548 
5549  /// ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.
5551 
5552  /// nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
5554 
5555  /// nanoACQUITY UPLC System with Technology: Waters LC-system nanoACQUITY UPLC System with Technology.
5557 
5558  /// nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
5560 
5561  /// TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
5563 
5564  /// GCT Premier: Waters oa-ToF based GCT Premier.
5565  MS_GCT_Premier = 1001770,
5566 
5567  /// MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
5569 
5570  /// MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
5572 
5573  /// MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
5575 
5576  /// MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
5578 
5579  /// MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
5581 
5582  /// MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
5584 
5585  /// Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
5587 
5588  /// Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
5589  MS_Synapt_G2_MS = 1001778,
5590 
5591  /// Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
5593 
5594  /// Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
5596 
5597  /// Synapt HDMS: Waters oa-ToF based Synapt HDMS.
5598  MS_Synapt_HDMS = 1001781,
5599 
5600  /// Synapt MS: Waters oa-ToF based Synapt MS.
5601  MS_Synapt_MS = 1001782,
5602 
5603  /// Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
5604  MS_Xevo_G2_Q_Tof = 1001783,
5605 
5606  /// Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
5607  MS_Xevo_G2_Tof = 1001784,
5608 
5609  /// Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
5610  MS_Xevo_Q_Tof = 1001785,
5611 
5612  /// 3100: Waters quadrupole based 3100.
5613  MS_3100 = 1001786,
5614 
5615  /// Acquity SQD: Waters quadrupole based Acquity SQD.
5616  MS_Acquity_SQD = 1001787,
5617 
5618  /// Acquity TQD: Waters quadrupole based Acquity TQD.
5619  MS_Acquity_TQD = 1001788,
5620 
5621  /// Quattro micro GC: Waters quadrupole based Quattro micro GC.
5623 
5624  /// Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
5625  MS_Xevo_TQ_MS = 1001790,
5626 
5627  /// Xevo TQD: Waters quadrupole based Xevo TQD.
5628  MS_Xevo_TQD = 1001791,
5629 
5630  /// Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
5631  MS_Xevo_TQ_S = 1001792,
5632 
5633  /// Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.
5635 
5636  /// Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
5637  MS_Empower = 1001795,
5638 
5639  /// Unify: Waters Unify software for liquid chromatography and mass spectrometry acquisition.
5640  MS_Unify = 1001796,
5641 
5642  /// travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5644 
5645  /// TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5647 
5648  /// LECO software: LECO software for data acquisition and analysis.
5649  MS_LECO_software = 1001798,
5650 
5651  /// ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
5653 
5654  /// LECO instrument model: LECO instrument model.
5656 
5657  /// Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
5658  MS_Pegasus_HRT = 1001801,
5659 
5660  /// Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
5661  MS_Citius_HRT = 1001802,
5662 
5663  /// Pegasus: LECO GC time-of-flight mass spectrometer.
5664  MS_Pegasus = 1001803,
5665 
5666  /// TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
5667  MS_TruTOF = 1001804,
5668 
5669  /// quantification datatype: The data type of the value reported in a QuantLayer for a feature, peptide, protein, protein group.
5671 
5672  /// quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values.
5674 
5675  /// study variable attribute: Attribute describing a study variable.
5677 
5678  /// technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.
5680 
5681  /// biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individual or sample.
5683 
5684  /// experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
5686 
5687  /// experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
5689 
5690  /// experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
5692 
5693  /// experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
5695 
5696  /// generic experimental condition: The experimental condition is given in the value of this term.
5698 
5699  /// time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term.
5701 
5702  /// dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term.
5704 
5705  /// raw file attribute: Attribute describing a raw file.
5707 
5708  /// one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
5710 
5711  /// two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).
5713 
5714  /// three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
5716 
5717  /// four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
5719 
5720  /// eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
5722 
5723  /// raw files group attribute: Attribute describing, how raw files build a raw file group.
5725 
5726  /// merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
5728 
5729  /// feature list attribute: Attribute describing a feature list.
5731 
5732  /// mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given.
5734 
5735  /// mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit.
5737 
5738  /// feature attribute: Attribute describing a feature.
5740 
5741  /// SRM transition ID: Identifier for an SRM transition in an external document describing additional information about the transition.
5743 
5744  /// Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
5746 
5747  /// SILACAnalyzer: Software for SILAC workflow.
5748  MS_SILACAnalyzer = 1001831,
5749 
5750  /// quantitation software comment or customizations: Quantitation software comment or any customizations to the default setup of the software.
5752 
5753  /// quantitation analysis summary: The overall workflow of this quantitation report.
5755 
5756  /// LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
5758 
5759  /// SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
5761 
5762  /// spectral counting quantitation analysis: Spectral counting workflow (number of identified MS/MS spectra as approximation of peptide / protein quant).
5764 
5765  /// iTRAQ quantitation analysis: Quantification analysis using the AB SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS/MS spectra near 114 m/z.
5767 
5768  /// SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).
5770 
5771  /// metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).
5773 
5774  /// LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
5776 
5777  /// LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
5779 
5780  /// peptide PSM count: The number of MS/MS spectra identified for this peptide in spectral counting.
5782 
5783  /// MS1 feature maximum intensity: Maximum intensity of MS1 feature.
5785 
5786  /// MS1 feature area: Area of MS1 feature.
5788 
5789  /// peak area: Area of MS1 peak (e.g. SILAC, 15N).
5791 
5792  /// isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N).
5794 
5795  /// reporter ion intensity: Intensity of MS/MS reporter ion (e.g. iTraq).
5797 
5798  /// simple ratio of two values: Simple ratio of two values (enumerator and denominator).
5800 
5801  /// sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values.
5803 
5804  /// normalized peptide value: Normalized peptide value.
5806 
5807  /// protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values.
5809 
5810  /// normalized protein value: Normalized protein value.
5812 
5813  /// max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis).
5815 
5816  /// ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
5817  MS_ANOVA_p_value = 1001854,
5818 
5819  /// t-test p-value: P-value of t-Test of two groups.
5821 
5822  /// reporter ion raw value: Intensity (or area) of MS/MS reporter ion (e.g. iTraq).
5824 
5825  /// reporter ion normalized value: Normalized value of MS/MS reporter ion (e.g. iTraq).
5827 
5828  /// XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
5829  MS_XIC_area = 1001858,
5830 
5831  /// normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
5833 
5834  /// protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios.
5836 
5837  /// quantification data processing: Terms used to describe types of quantification data processing.
5839 
5840  /// normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting).
5842 
5843  /// quantile normalization, proteins: Normalization of protein values to approach the same distribution.
5845 
5846  /// quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
5848 
5849  /// Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
5851 
5852  /// Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
5854 
5855  /// Progenesis normalization: Normalization as performed by Progenesis LC-MS.
5857 
5858  /// distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
5860 
5861  /// protein-level q-value: Estimation of the q-value for proteins.
5863 
5864  /// distinct peptide-level p-value: Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
5866 
5867  /// protein-level p-value: Estimation of the p-value for proteins.
5869 
5870  /// distinct peptide-level e-value: Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
5872 
5873  /// protein-level e-value: Estimation of the e-value for proteins.
5875 
5876  /// FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0.
5878 
5879  /// modification motif: The regular expression describing the sequence motif for a modification.
5881 
5882  /// modification probability: The a priori probability of a modification.
5884 
5885  /// ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments.
5887 
5888  /// MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
5890 
5891  /// offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation.
5893 
5894  /// in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum.
5896 
5897  /// mz5 format: mz5 file format, modelled after mzML.
5898  MS_mz5_format = 1001881,
5899 
5900  /// transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate.
5902 
5903  /// coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean.
5905 
5906  /// signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal.
5908 
5909  /// command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name.
5911 
5912  /// SQID: Software for data analysis of peptides and proteins.
5913  MS_SQID = 1001886,
5914 
5915  /// SQID:score: The SQID result 'Score'.
5916  MS_SQID_score = 1001887,
5917 
5918  /// SQID:deltaScore: The SQID result 'deltaScore'.
5920 
5921  /// SQID:protein score: The SQID result 'protein score'.
5923 
5924  /// Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS.
5926 
5927  /// Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS.
5929 
5930  /// Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS.
5932 
5933  /// Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS.
5935 
5936  /// Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
5938 
5939  /// Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
5941 
5942  /// Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
5944 
5945  /// MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
5947 
5948  /// MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
5950 
5951  /// MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant.
5953 
5954  /// MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
5956 
5957  /// MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
5958  MS_MaxQuant_PEP = 1001901,
5959 
5960  /// MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
5962 
5963  /// MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
5965 
5966  /// MaxQuant:MS/MS count: The data type MS/MS count produced by MaxQuant.
5968 
5969  /// emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
5970  MS_emPAI_value = 1001905,
5971 
5972  /// APEX value: The APEX value of protein abundance, produced from the APEX software.
5973  MS_APEX_value = 1001906,
5974 
5975  /// retention time window width: The full width of a retention time window for a chromatographic peak.
5977 
5978  /// ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
5979  MS_ISQ = 1001908,
5980 
5981  /// Velos Plus: Thermo Scientific second generation Velos.
5982  MS_Velos_Plus = 1001909,
5983 
5984  /// LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
5986 
5987  /// Q Exactive: Thermo Scientific Q Exactive.
5988  MS_Q_Exactive = 1001911,
5989 
5990  /// PinPoint: Thermo Scientific PinPoint SRM analysis software.
5991  MS_PinPoint = 1001912,
5992 
5993  /// S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts.
5995 
5996  /// pymzML: Python module to interface mzML Data.
5997  MS_pymzML = 1001914,
5998 
5999  /// leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
6001 
6002  /// proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
6004 
6005  /// glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6007 
6008  /// staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6010 
6011  /// Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6013 
6014  /// 2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
6016 
6017  /// ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
6019 
6020  /// ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number.
6022 
6023  /// Digital Object Identifier (DOI): DOI unique identifier of a publication.
6025 
6026  /// doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
6028 
6029  /// external reference keyword: Free text attribute that can enrich the information about an entity.
6031 
6032  /// journal article keyword: Keyword present in a scientific publication.
6034 
6035  /// submitter keyword: Keyword assigned by the data submitter.
6037 
6038  /// curator keyword: Keyword assigned by a data curator.
6040 
6041  /// Tranche file hash: Hash assigned by the Tranche resource to an individual file.
6043 
6044  /// Tranche project hash: Hash assigned by the Tranche resource to a whole project.
6046 
6047  /// PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
6049 
6050  /// PRIDE project URI: URI that allows the access to one project in the PRIDE database.
6052 
6053  /// source interface: The source interface.
6055 
6056  /// source interface model: The source interface model.
6058 
6059  /// source sprayer: The source sprayer.
6061 
6062  /// source sprayer type: The source sprayer type.
6064 
6065  /// source sprayer manufacturer: The source sprayer manufacturer.
6067 
6068  /// source sprayer model: The source sprayer model.
6070 
6071  /// sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
6072  MS_sample_plate = 1001937,
6073 
6074  /// sample plate type: The sample plate type.
6076 
6077  /// stainless steel plate: Stainless steel plate.
6079 
6080  /// coated glass plate: Coated glass plate.
6082 
6083  /// electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
6085 
6086  /// static supply electrospray: The sprayer is loaded with sample once.
6088 
6089  /// fed supply electrospray: The sprayer is continuously fed with sample.
6091 
6092  /// Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6094 
6095  /// CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6097 
6098  /// Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
6099  MS_Pegasus_4D = 1001945,
6100 
6101  /// PEAKS Studio: PEAKS Studio software for data analysis.
6102  MS_PEAKS_Studio = 1001946,
6103 
6104  /// PEAKS Online: PEAKS Online software for high throughput data analysis.
6105  MS_PEAKS_Online = 1001947,
6106 
6107  /// PEAKS Node: PEAKS Node software for high throughput data analysis.
6108  MS_PEAKS_Node = 1001948,
6109 
6110  /// BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
6111  MS_BSI_software = 1001949,
6112 
6113  /// PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
6115 
6116  /// PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
6118 
6119  /// ZCore:probScore: The ZCore probability score.
6121 
6122  /// source interface manufacturer: The source interface manufacturer.
6124 
6125  /// acquisition parameter: Parameters used in the mass spectrometry acquisition.
6127 
6128  /// no cleavage: No cleavage.
6129  MS_no_cleavage = 1001955,
6130 
6131  /// unspecific cleavage: Unspecific cleavage.
6133 
6134  /// (?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
6136 
6137  /// (?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
6139 
6140  /// (?<=[^E]E): Regular expression for glutamyl endopeptidase.
6141  MS_______E_E_ = 1001959,
6142 
6143  /// (?<=W): Regular expression for 2-iodobenzoate.
6144  MS_____W_ = 1001960,
6145 
6146  /// peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion.
6148 
6149  /// Mascot:C13 counts: C13 peaks to use in peak detection.
6151 
6152  /// ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
6154 
6155  /// ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
6157 
6158  /// ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
6160 
6161  /// product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry.
6163 
6164  /// product ion drift time: The ion drift time of an MS2 product ion.
6166 
6167  /// PTM localization score: A score that assign confidence to the localization of an amino acid modification on a peptide sequence.
6169 
6170  /// ProteomeDiscoverer:phosphoRS score: Peptide score based on the cumulative binomial probability that the observed match is a random event.
6172 
6173  /// ProteomeDiscoverer:phosphoRS sequence probability: Probability that the respective isoform is correct.
6175 
6176  /// ProteomeDiscoverer:phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated.
6178 
6179  /// PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
6181 
6182  /// DeBunker: DeBunker software.
6183  MS_DeBunker = 1001973,
6184 
6185  /// DeBunker:score: Score specific to DeBunker.
6187 
6188  /// delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6189  MS_delta_m_z = 1001975,
6190 
6191  /// m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6193 
6194  /// delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6195  MS_delta_M = 1001976,
6196 
6197  /// mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6199 
6200  /// MSQuant: MSQuant software.
6201  MS_MSQuant = 1001977,
6202 
6203  /// MSQuant:PTM-score: The PTM score from MSQuant software.
6205 
6206  /// MaxQuant:PTM Score: The PTM score from MaxQuant software.
6208 
6209  /// MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
6211 
6212  /// MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
6214 
6215  /// MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software.
6217 
6218  /// MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest).
6220 
6221  /// Ascore: Ascore software.
6222  MS_Ascore = 1001984,
6223 
6224  /// Ascore:Ascore: The Ascore score value from Ascore software.
6225  MS_Ascore_Ascore = 1001985,
6226 
6227  /// H-Score: H-Score for peptide phosphorylation site location.
6228  MS_H_Score = 1001986,
6229 
6230  /// vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method.
6232 
6233  /// crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
6235 
6236  /// fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
6238 
6239  /// overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method.
6241 
6242  /// sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
6244 
6245  /// spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
6247 
6248  /// quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling.
6250 
6251  /// top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'.
6253 
6254  /// convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures.
6256 
6257  /// median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments.
6259 
6260  /// wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform.
6262 
6263  /// sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum.
6265 
6266  /// SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum.
6268 
6269  /// area normalization: Normalization of areas below the curves.
6271 
6272  /// LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID.
6273  MS_LIFT = 1002000,
6274 
6275  /// MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
6277 
6278  /// MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
6280 
6281  /// MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
6283 
6284  /// MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
6286 
6287  /// iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys.
6289 
6290  /// SRM transition type: The type of the transitions, e.g. target or decoy.
6292 
6293  /// MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
6295 
6296  /// target SRM transition: A transition used to target a specific compound that may be in the sample.
6298 
6299  /// target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample.
6301 
6302  /// decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6304 
6305  /// decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6307 
6308  /// isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.
6310 
6311  /// TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labelling workflow.
6313 
6314  /// desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6316 
6317  /// DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6319 
6320  /// Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).
6322 
6323  /// collision energy ramp start: Collision energy at the start of the collision energy ramp.
6325 
6326  /// collision energy ramp end: Collision energy at the end of the collision energy ramp.
6328 
6329  /// spectral count peptide level quantitation: Spectral count peptide level quantitation.
6331 
6332  /// spectral count protein level quantitation: Spectral count protein level quantitation.
6334 
6335  /// spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
6337 
6338  /// MS1 label-based analysis: MS1 label-based analysis.
6340 
6341  /// label-free raw feature quantitation: Label-free raw feature quantitation.
6343 
6344  /// label-free peptide level quantitation: Label-free peptide level quantitation.
6346 
6347  /// label-free protein level quantitation: Label-free protein level quantitation.
6349 
6350  /// label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
6352 
6353  /// MS2 tag-based analysis: MS2 tag-based analysis.
6355 
6356  /// MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
6358 
6359  /// MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
6361 
6362  /// MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
6364 
6365  /// MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
6367 
6368  /// nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
6370 
6371  /// original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.
6373 
6374  /// modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.
6376 
6377  /// PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment.
6379 
6380  /// PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
6382 
6383  /// contact role: Role of the contact person.
6384  MS_contact_role = 1002033,
6385 
6386  /// first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
6387  MS_first_author = 1002034,
6388 
6389  /// senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
6390  MS_senior_author = 1002035,
6391 
6392  /// co-author: One of a set of authors associated with a publication or release.
6393  MS_co_author = 1002036,
6394 
6395  /// dataset submitter: A person who submits a dataset to a repository.
6397 
6398  /// unlabeled sample: A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6400 
6401  /// light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6403 
6404  /// inlet attribute: Inlet properties that are associated with a value.
6406 
6407  /// inlet temperature: The temperature of the inlet of a mass spectrometer.
6409 
6410  /// source temperature: The temperature of the source of a mass spectrometer.
6412 
6413  /// modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column.
6415 
6416  /// ProteinProspector: ProteinProspector software for data acquisition and analysis.
6418 
6419  /// ProteinProspector:score: The ProteinProspector result 'Score'.
6421 
6422  /// ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
6424 
6425  /// native source path: The original source path used for directory-based sources.
6427 
6428  /// MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
6429  MS_MS_GF = 1002047,
6430 
6431  /// MS-GF+: MS-GF+ software used to analyze the spectra.
6432  MS_MS_GF_ = 1002048,
6433 
6434  /// MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
6436 
6437  /// MS-GF:RawScore: MS-GF raw score.
6439 
6440  /// MS-GF:DeNovoScore: MS-GF de novo score.
6442 
6443  /// MS-GF:Energy: MS-GF energy score.
6444  MS_MS_GF_Energy = 1002051,
6445 
6446  /// MS-GF:SpecEValue: MS-GF spectral E-value.
6448 
6449  /// MS-GF:EValue: MS-GF E-value.
6450  MS_MS_GF_EValue = 1002053,
6451 
6452  /// MS-GF:QValue: MS-GF Q-value.
6453  MS_MS_GF_QValue = 1002054,
6454 
6455  /// MS-GF:PepQValue: MS-GF peptide-level Q-value.
6457 
6458  /// MS-GF:PEP: MS-GF posterior error probability.
6459  MS_MS_GF_PEP = 1002056,
6460 
6461  /// modification specificity protein N-term: As parameter for search engine: apply the modification only at the N-terminus of a protein.
6463 
6464  /// modification specificity protein C-term: As parameter for search engine: apply the modification only at the C-terminus of a protein.
6466 
6467  /// Microsoft Excel: Microsoft Excel (can be used for spectral counting).
6469 
6470  /// database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
6472 
6473  /// decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
6475 
6476  /// metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).
6478 
6479  /// FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
6480  MS_FindPairs = 1002063,
6481 
6482  /// peptide consensus RT: Peptide consensus retention time.
6484 
6485  /// peptide consensus m/z: Peptide consensus mass/charge ratio.
6487 
6488  /// ratio calculation method: Method used to calculate the ratio.
6490 
6491  /// protein value: median of peptide ratios: Protein quantification value calculated as median of peptide ratios.
6493 
6494  /// metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
6496 
6497  /// metabolic labelling: labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape.
6499 
6500  /// t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.
6501  MS_t_test = 1002070,
6502 
6503  /// ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.
6504  MS_ANOVA_test = 1002071,
6505 
6506  /// p-value: P-value as result of one of the processing steps described. Specify in the description, which processing step it was.
6507  MS_p_value = 1002072,
6508 
6509  /// mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'.
6511 
6512  /// quantification file format: File format containing quantification results.
6514 
6515  /// mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '.mzq'.
6517 
6518  /// PAnalyzer: PAnalyzer software for getting protein evidence categories.
6519  MS_PAnalyzer = 1002076,
6520 
6521  /// impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
6522  MS_impact = 1002077,
6523 
6524  /// ProteomeDiscoverer:1. Static Modification: Determine 1st static post-translational modifications (PTMs).
6526 
6527  /// ProteomeDiscoverer:2. Static Modification: Determine 2nd static post-translational modifications (PTMs).
6529 
6530  /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before.
6532 
6533  /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.
6535 
6536  /// first column elution time: The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column.
6538 
6539  /// second column elution time: The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column.
6541 
6542  /// multidimensional chromatography modulation description: Multidimensional chromatography modulation description.
6544 
6545  /// two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition.
6547 
6548  /// two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time.
6550 
6551  /// two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition.
6553 
6554  /// two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time.
6556 
6557  /// ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that do not belong to a protein.
6559 
6560  /// Calculate Probability Scores: Flag indicating that a probability score for the assessment that a reported peptide match is a random occurence is calculated.
6562 
6563  /// ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
6565 
6566  /// Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator.
6568 
6569  /// search engine input parameter: Search engine input parameter.
6571 
6572  /// common search engine input parameter: Search engine input parameter that is shared by more than one search engine.
6574 
6575  /// Mascot input parameter: Search engine input parameters specific to Mascot.
6577 
6578  /// SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
6580 
6581  /// Phenyx input parameter: Search engine input parameters specific to Phenyx.
6583 
6584  /// ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
6586 
6587  /// OMSSA input parameter: Search engine input parameters specific to OMSSA.
6589 
6590  /// ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
6592 
6593  /// ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
6595 
6596  /// software input parameter: Software input parameters.
6598 
6599  /// common software input parameter: Software input parameter that is shared by more than one software.
6601 
6602  /// software specific input parameter: Software specific input parameter.
6604 
6605  /// Scaffold input parameter: Search engine input parameters specific to Scaffold.
6607 
6608  /// Percolator input parameter: Search engine input parameters specific to Percolator.
6610 
6611  /// higher score better: Indicates that a higher score is better.
6613 
6614  /// lower score better: Indicates that a lower score is better.
6616 
6617  /// assay attribute: Attribute describing an assay.
6619 
6620  /// assay label attribute: Attribute describing an assay label.
6622 
6623  /// protein group list attribute: Attribute describing a protein group list.
6625 
6626  /// protein group attribute: Attribute describing a protein group.
6628 
6629  /// protein list attribute: Attribute describing a protein list.
6631 
6632  /// peptide consensus list attribute: Attribute describing a peptide consensus list.
6634 
6635  /// peptide consensus attribute: Attribute describing a peptide consensus.
6637 
6638  /// small molecule list attribute: Attribute describing a small molecule list.
6640 
6641  /// small molecule attribute: Attribute describing a small molecule.
6643 
6644  /// small molecule modification attribute: Attribute describing a small molecule modification.
6646 
6647  /// experiment name: The name for identifying an experiment.
6649 
6650  /// spectral count feature: Dummy decribing a spectral count feature.
6652 
6653  /// counts reporting: FeatureList of spectral counts.
6655 
6656  /// x-Tracker: x-Tracker generic tool for quantitative proteomics.
6657  MS_x_Tracker = 1002123,
6658 
6659  /// ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
6660  MS_ProteoSuite = 1002124,
6661 
6662  /// combined FDRScore: FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
6664 
6665  /// database UniProtKB: The name of the UniProtKB knowledgebase.
6667 
6668  /// identification file attribute: Attribute describing an identification file.
6670 
6671  /// method file format: Attribute describing a method file format.
6673 
6674  /// ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment.
6675  MS_ITRAQAnalyzer = 1002129,
6676 
6677  /// identification file format: Attribute describing an identification file format.
6679 
6680  /// TOPP noise filter: Noise filter component of the TOPP software.
6682 
6683  /// TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
6685 
6686  /// TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.
6688 
6689  /// TOPP peak picker: Peak picker component of the TOPP software.
6691 
6692  /// TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.
6694 
6695  /// TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra.
6697 
6698  /// TOPP spectra filter: Spectra filter component of the TOPP software.
6700 
6701  /// TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
6703 
6704  /// TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.
6706 
6707  /// TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
6709 
6710  /// TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.
6712 
6713  /// TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.
6715 
6716  /// TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.
6718 
6719  /// TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square root.
6721 
6722  /// TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.
6724 
6725  /// TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak spectrum.
6727 
6728  /// TOPP map aligner: Map aligner component of the TOPP software.
6730 
6731  /// TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common peptide identifications.
6733 
6734  /// TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clustering approach.
6736 
6737  /// TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.
6739 
6740  /// numerator data type attribute: Attribute describing the data type of the numerator of a ratio.
6742 
6743  /// denominator data type attribute: Attribute describing the data type of the denominator of a ratio.
6745 
6746  /// protein level PSM counts: The number of spectra identified for this protein in spectral counting.
6748 
6749  /// TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
6751 
6752  /// TOPP IDMerger: Merges several protein/peptide identification files into one file.
6753  MS_TOPP_IDMerger = 1002155,
6754 
6755  /// TOPP IDFileConverter: Converts identification engine file formats.
6757 
6758  /// TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
6760 
6761  /// TOPP MzTabExporter: Exports various XML formats to an mzTab file.
6763 
6764  /// TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
6766 
6767  /// TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
6769 
6770  /// TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution data.
6772 
6773  /// TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.
6775 
6776  /// TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.
6778 
6779  /// TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.
6781 
6782  /// TOPP feature finder: Feature finder component of the TOPP software.
6784 
6785  /// TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.
6787 
6788  /// TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
6790 
6791  /// TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm.
6793 
6794  /// TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.
6796 
6797  /// TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
6799 
6800  /// TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.
6802 
6803  /// TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
6805 
6806  /// TOPP MapRTTransformer: Applies retention time transformations to maps.
6808 
6809  /// TOPP feature linker: Feature linker component of the TOPP software.
6811 
6812  /// TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.
6814 
6815  /// TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
6817 
6818  /// TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality threshold clustering approach.
6820 
6821  /// TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
6822  MS_TOPP_CompNovo = 1002178,
6823 
6824  /// TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode.
6826 
6827  /// TOPP software adaptor: Software adaptor to an external program in the TOPP software.
6829 
6830  /// TOPP InspectAdapter: Identifies MS/MS spectra using the external program Inspect.
6832 
6833  /// TOPP MascotAdapter: Identifies MS/MS spectra using the external program Mascot.
6835 
6836  /// TOPP MascotAdapterOnline: Identifies MS/MS spectra using the online version of the external program Mascot.
6838 
6839  /// TOPP OMSSAAdapter: Identifies MS/MS spectra using the external program OMSSA.
6841 
6842  /// TOPP PepNovoAdapter: Identifies MS/MS spectra using the external program PepNovo.
6844 
6845  /// TOPP XTandemAdapter: Identifies MS/MS spectra using the external program XTandem.
6847 
6848  /// TOPP SpecLibSearcher: Identifies peptide MS/MS spectra by spectral matching with a searchable spectral library.
6850 
6851  /// TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identification engines.
6853 
6854  /// TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
6856 
6857  /// TOPP IDFilter: Filters results from protein or peptide identification engines based on different criteria.
6858  MS_TOPP_IDFilter = 1002190,
6859 
6860  /// TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
6861  MS_TOPP_IDMapper = 1002191,
6862 
6863  /// TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.
6865 
6866  /// TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
6868 
6869  /// TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
6871 
6872  /// TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.
6874 
6875  /// TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).
6877 
6878  /// TOPP OpenSwath component: OpenSwath component of the TOPP software.
6880 
6881  /// TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
6883 
6884  /// TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
6886 
6887  /// TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.
6889 
6890  /// TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).
6892 
6893  /// TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized space.
6895 
6896  /// TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
6898 
6899  /// TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy searches.
6901 
6902  /// ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats.
6904 
6905  /// ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics experiments.
6907 
6908  /// ProteoWizard chainsaw: Filters and processes protein sequence databases.
6910 
6911  /// ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.
6913 
6914  /// ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a variety of formats.
6916 
6917  /// IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.
6918  MS_IsobariQ = 1002210,
6919 
6920  /// Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.
6922 
6923  /// IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric.
6925 
6926  /// PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6928 
6929  /// PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6931 
6932  /// PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6934 
6935  /// PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6937 
6938  /// decoy peptide: A putative identified peptide issued from a decoy sequence database.
6939  MS_decoy_peptide = 1002217,
6940 
6941  /// percent collision energy ramp start: Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion.
6943 
6944  /// percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion.
6946 
6947  /// MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database.
6948  MS_MRMaid = 1002220,
6949 
6950  /// MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.
6952 
6953  /// SRM transition attribute: Attribute associated with a SRM transition.
6955 
6956  /// precursor ion detection probability: Probability of detecting precursor when parent protein is present.
6958 
6959  /// product ion detection probability: Probability of detecting product ion when precursor ion is present.
6961 
6962  /// average product ion intensity: Average value of product ion intensity in a collection of identified spectra.
6964 
6965  /// product ion intensity standard deviation: Standard deviation of product ion intensity in a collection of identified spectra.
6967 
6968  /// number of product ion observations: The number of times the specific product ion has been observed in a series of SRM experiments.
6970 
6971  /// number of precursor ion observations: The number of times the specific precursor ion has been observed in a series of SRM experiments.
6973 
6974  /// ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a decoy search for high-confidence peptides.
6976 
6977  /// ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy search for medium-confidence peptides.
6979 
6980  /// regular expressions for a GUID: ([A-Fa-f0-9]\{8\}-([A-Fa-f0-9]\{4\}-)\{3\}[A-Fa-f0-9]\{12\}).
6982 
6983  /// ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (GUID).
6985 
6986  /// ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectra are taken into consideration.
6988 
6989  /// selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
6991 
6992  /// ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores.
6994 
6995  /// ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides.
6997 
6998  /// mzidLib: A library of Java routines for manipulating mzIdentML files.
6999  MS_mzidLib = 1002237,
7000 
7001  /// mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
7003 
7004  /// mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
7006 
7007  /// mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
7009 
7010  /// mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.
7012 
7013  /// mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files.
7015 
7016  /// mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.
7018 
7019  /// mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search.
7021 
7022  /// mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
7024 
7025  /// mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file.
7027 
7028  /// mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files.
7030 
7031  /// SEQUEST:spscore: The SEQUEST result 'SpScore'.
7033 
7034  /// SEQUEST:sprank: The SEQUEST result 'SpRank'.
7036 
7037  /// SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
7039 
7040  /// Comet: Comet open-source sequence search engine developed at the University of Washington.
7041  MS_Comet = 1002251,
7042 
7043  /// Comet:xcorr: The Comet result 'XCorr'.
7044  MS_Comet_xcorr = 1002252,
7045 
7046  /// Comet:deltacn: The Comet result 'DeltaCn'.
7047  MS_Comet_deltacn = 1002253,
7048 
7049  /// Comet:deltacnstar: The Comet result 'DeltaCnStar'.
7051 
7052  /// Comet:spscore: The Comet result 'SpScore'.
7053  MS_Comet_spscore = 1002255,
7054 
7055  /// Comet:sprank: The Comet result 'SpRank'.
7056  MS_Comet_sprank = 1002256,
7057 
7058  /// Comet:expectation value: The Comet result 'Expectation value'.
7060 
7061  /// Comet:matched ions: The Comet result 'Matched Ions'.
7063 
7064  /// Comet:total ions: The Comet result 'Total Ions'.
7066 
7067  /// PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
7069 
7070  /// Byonic: Byonic search engine from Protein Metrics.
7071  MS_Byonic = 1002261,
7072 
7073  /// Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct.
7074  MS_Byonic_Score = 1002262,
7075 
7076  /// Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct.
7078 
7079  /// Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct.
7081 
7082  /// Byonic:PEP: Byonic posterior error probability.
7083  MS_Byonic_PEP = 1002265,
7084 
7085  /// Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism.
7087 
7088  /// Byonic:Protein LogProb: The log p-value of the protein.
7090 
7091  /// Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
7093 
7094  /// Byonic:Best Score: Best (largest) Byonic score of a PSM.
7096 
7097  /// chromatography separation: A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure.
7099 
7100  /// liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid.
7102 
7103  /// gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile phase is a gas.
7105 
7106  /// detector potential: Detector potential difference in volts.
7108 
7109  /// SQ Detector 2: Waters quadrupole based SQ Detector 2.
7110  MS_SQ_Detector_2 = 1002274,
7111 
7112  /// Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
7113  MS_Xevo_G2_S_Tof = 1002275,
7114 
7115  /// Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
7117 
7118  /// AutoSpec Premier: Waters AutoSpec Premier.
7120 
7121  /// Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
7122  MS_Pegasus_III = 1002278,
7123 
7124  /// maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7125  MS_maXis_4G = 1002279,
7126 
7127  /// compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7128  MS_compact = 1002280,
7129 
7130  /// SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
7132 
7133  /// SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
7135 
7136  /// SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
7138 
7139  /// SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.
7141 
7142  /// Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS/MS proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7144 
7145  /// TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS/MS proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7147 
7148  /// Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipeline.
7150 
7151  /// PeptideProphet: A program in the TPP that calculates PSM probabilities for MS/MS proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format.
7153 
7154  /// iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format.
7155  MS_iProphet = 1002288,
7156 
7157  /// ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format.
7159 
7160  /// XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
7161  MS_XPRESS = 1002290,
7162 
7163  /// Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc.
7164  MS_Libra = 1002291,
7165 
7166  /// PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites.
7167  MS_PTMProphet = 1002292,
7168 
7169  /// Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
7171 
7172  /// Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
7174 
7175  /// SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
7176  MS_SCION_SQ = 1002295,
7177 
7178  /// SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
7179  MS_SCION_TQ = 1002296,
7180 
7181  /// EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
7182  MS_EVOQ_Elite = 1002297,
7183 
7184  /// EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
7185  MS_EVOQ_Qube = 1002298,
7186 
7187  /// micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7189 
7190  /// amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.
7192 
7193  /// amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7194  MS_amaZon_Speed = 1002301,
7195 
7196  /// Bruker Container format: Bruker Container raw file format.
7198 
7199  /// Bruker Container nativeID format: Native identifier (UUID).
7201 
7202  /// domain range: Domain range of a numerical value.
7203  MS_domain_range = 1002304,
7204 
7205  /// value between 0 and 1 inclusive: Value range for probabilities.
7207 
7208  /// value greater than zero: Positive value range.
7210 
7211  /// fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion.
7213 
7214  /// fluorescence detector: A detector using a fluorescent signal after excitation with light.
7216 
7217  /// Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM.
7219 
7220  /// Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein.
7222 
7223  /// Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information.
7225 
7226  /// MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compression.
7228 
7229  /// MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.
7231 
7232  /// MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compression.
7234 
7235  /// consensus result: Indicates a consensus result from several search engine runs.
7237 
7238  /// ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.
7240 
7241  /// ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.
7243 
7244  /// ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.
7246 
7247  /// Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
7249 
7250  /// ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.
7252 
7253  /// ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
7255 
7256  /// ProteomeDiscoverer:min peptide length: Minimum peptide length.
7258 
7259  /// ProteomeDiscoverer:max peptide length: Maximum peptide length.
7261 
7262  /// ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
7264 
7265  /// ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifications.
7267 
7268  /// ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
7270 
7271  /// ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per PSM.
7273 
7274  /// ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.
7276 
7277  /// ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.
7279 
7280  /// ProteomeDiscoverer:3. Static Modification: Determine 3rd static (fixed) post-translational modifications (PTMs).
7282 
7283  /// ProteomeDiscoverer:5. Dynamic Modification: Determine 5th dynamic (variable) post-translational modifications (PTMs).
7285 
7286  /// lab head: The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group.
7287  MS_lab_head = 1002332,
7288 
7289  /// conversion software: Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process.
7291 
7292  /// ProCon: Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML.
7293  MS_ProCon = 1002334,
7294 
7295  /// PRIDE Converter2: Java software designed to convert one of several proteomics identification results formats into PRIDE XML.
7297 
7298  /// Amanda: Amanda scoring system for PSM identification.
7299  MS_Amanda = 1002336,
7300 
7301  /// Andromeda: Andromeda is a peptide search engine.
7302  MS_Andromeda = 1002337,
7303 
7304  /// Andromeda:score: The probability based score of the Andromeda search engine.
7306 
7307  /// site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modification.
7309 
7310  /// ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project.
7312 
7313  /// second-pass peptide identification: A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search.
7315 
7316  /// MZmine: A framework for differential analysis of mass spectrometry data.
7317  MS_MZmine = 1002342,
7318 
7319  /// ion stability type: Stability type of the ion.
7321 
7322  /// Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers.
7323  MS_Maltcms = 1002344,
7324 
7325  /// PSM-level result details: Peptide spectrum match level information.
7327 
7328  /// protein group-level result details: Protein group level information.
7330 
7331  /// PSM-level identification confidence metric: Identification confidence metric for a peptide spectrum match.
7333 
7334  /// protein group-level identification confidence metric: Identification confidence metric for a protein group.
7336 
7337  /// value greater than zero but less than or equal to one: Positive value range less than or equal to 1.
7339 
7340  /// PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.
7342 
7343  /// PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.
7345 
7346  /// PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
7348 
7349  /// PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
7351 
7352  /// PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
7354 
7355  /// PSM-level FDRScore: FDRScore for peptide spectrum matches.
7357 
7358  /// PSM-level combined FDRScore: Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7360 
7361  /// PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum.
7363 
7364  /// search engine specific score for distinct peptides: Search engine specific distinct peptide score.
7366 
7367  /// distinct peptide-level local FDR: Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7369 
7370  /// distinct peptide-level FDRScore: FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7372 
7373  /// distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools.
7375 
7376  /// distinct peptide-level probability: Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs.
7378 
7379  /// search engine specific score for proteins: Search engine specific protein scores.
7381 
7382  /// protein-level local FDR: Estimation of the local false discovery rate of proteins.
7384 
7385  /// FDRScore for proteins: FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7387 
7388  /// combined FDRScore for proteins: Combined FDRScore for proteins.
7390 
7391  /// probability for proteins: Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7393 
7394  /// search engine specific score for protein groups: Search engine specific protein group scores.
7396 
7397  /// protein group-level global FDR: Estimation of the global false discovery rate of protein groups.
7399 
7400  /// protein group-level local FDR: Estimation of the local false discovery rate of protein groups.
7402 
7403  /// protein group-level p-value: Estimation of the p-value for protein groups.
7405 
7406  /// protein group-level e-value: Estimation of the e-value for protein groups.
7408 
7409  /// protein group-level q-value: Estimation of the q-value for protein groups.
7411 
7412  /// protein group-level FDRScore: FDRScore for protein groups.
7414 
7415  /// protein group-level combined FDRScore: Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7417 
7418  /// protein group-level probability: Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7420 
7421  /// ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.
7423 
7424  /// ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.
7426 
7427  /// ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do not belong to a protein.
7429 
7430  /// false localization rate: Estimation of the false localization rate for modification site assignment.
7432 
7433  /// MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.
7435 
7436  /// Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
7438 
7439  /// SCiLS software: SCiLS software for data acquisition and analysis.
7441 
7442  /// SCiLS Lab: SCiLS Lab software.
7443  MS_SCiLS_Lab = 1002384,
7444 
7445  /// SCiLS Lab format: SCiLS Lab file format.
7447 
7448  /// preprocessing software: Preprocessing software.
7450 
7451  /// PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.
7452  MS_PIA = 1002387,
7453 
7454  /// PIA XML format: A compilation of search engine results in the PIA XML format.
7456 
7457  /// PIA workflow parameter: A parameter set for a single PIA analysis.
7459 
7460  /// PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.
7462 
7463  /// PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA compilation.
7465 
7466  /// PIA:PSM sets created: Indicates whether PSM sets were created.
7468 
7469  /// PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR calculation, 0 means all.
7471 
7472  /// PIA:protein score: The score given to a protein by any protein inference.
7474 
7475  /// PIA:protein inference: The used algorithm for the protein inference using PIA.
7477 
7478  /// PIA:protein inference filter: A filter used by PIA for the protein inference.
7480 
7481  /// PIA:protein inference scoring: The used scoring method for the protein inference using PIA.
7483 
7484  /// PIA:protein inference used score: The used base score for the protein inference using PIA.
7486 
7487  /// PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inference.
7489 
7490  /// PIA:filter: A filter used for the report generation.
7491  MS_PIA_filter = 1002400,
7492 
7493  /// leading protein: At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members.
7495 
7496  /// non-leading protein: Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence.
7498 
7499  /// group representative: An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative.
7501 
7502  /// count of identified proteins: The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file.
7504 
7505  /// protein cluster details: Details describing a protein cluster.
7507 
7508  /// count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7510 
7511  /// cluster identifier: An identifier applied to protein groups to indicate that they are linked by shared peptides.
7513 
7514  /// number of distinct protein sequences: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7516 
7517  /// marginally distinguished protein: Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group.
7519 
7520  /// Anubis: Anubis software for selected reaction monitoring data.
7521  MS_Anubis = 1002410,
7522 
7523  /// TraML format: The TraML format for transitions in SRM from the PSI. File extension '.TraML'.
7524  MS_TraML_format = 1002411,
7525 
7526  /// total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM).
7528 
7529  /// product background: The background area for the quantified transition.
7531 
7532  /// postprocessing software: Postprocessing software.
7534 
7535  /// protein group passes threshold: A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file.
7537 
7538  /// Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
7540 
7541  /// Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
7543 
7544  /// TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
7545  MS_TSQ_Quantiva = 1002418,
7546 
7547  /// TSQ Endura: Thermo Scientific TSQ Endura MS.
7548  MS_TSQ_Endura = 1002419,
7549 
7550  /// PASSEL experiment URI: URI that allows access to a PASSEL experiment.
7552 
7553  /// Paragon input parameter: Search engine input parameters specific to Paragon.
7555 
7556  /// Paragon: sample type: The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation.
7558 
7559  /// Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation.
7561 
7562  /// Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument.
7564 
7565  /// Paragon: search effort: The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search.
7567 
7568  /// Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions.
7570 
7571  /// Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.
7573 
7574  /// Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is conducted.
7576 
7577  /// Paragon: background correction: The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples.
7579 
7580  /// Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity.
7582 
7583  /// Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios.
7585 
7586  /// search engine specific input metadata: Search engine specific metadata that are not user-controlled settings.
7588 
7589  /// Paragon: modified data dictionary or parameter translation: This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result.
7591 
7592  /// number of spectra searched: Number of spectra in a search.
7594 
7595  /// data processing start time: The time that a data processing action was started.
7597 
7598  /// Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done.
7600 
7601  /// number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach is used.
7603 
7604  /// spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificationList).
7606 
7607  /// final PSM list UNDER DISCUSSION: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult.
7609 
7610  /// intermediate PSM list UNDER DISCUSSION: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult.
7612 
7613  /// Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.
7615 
7616  /// chromatograph file format: The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
7618 
7619  /// Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.
7621 
7622  /// 6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
7624 
7625  /// 6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity.
7627 
7628  /// 6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity.
7630 
7631  /// Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects.
7633 
7634  /// PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
7636 
7637  /// PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
7639 
7640  /// param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
7642 
7643  /// param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
7645 
7646  /// Maui: The Maltcms Graphical User Interface.
7647  MS_Maui = 1002452,
7648 
7649  /// No fixed modifications searched: No fixed modifications are included as a parameter for the search, and therefore they are not reported.
7651 
7652  /// No variable modifications searched: No variable modifications are included as a parameter for the search, and therefore they are not reported.
7654 
7655  /// H2O neutral loss: Neutral loss of water.
7657 
7658  /// NH3 neutral loss: Neutral loss of ammonia.
7660 
7661  /// H3PO4 neutral loss: Neutral loss of phosphoric acid.
7663 
7664  /// PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification results.
7665  MS_PeptideShaker = 1002458,
7666 
7667  /// MS Amanda csv format: MS Amanda csv output format.
7669 
7670  /// protein group-level global FNR: Estimation of the global false negative rate of protein groups.
7672 
7673  /// protein group-level confidence: Estimation of the global confidence of protein groups.
7675 
7676  /// distinct peptide-level global FNR: Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7678 
7679  /// distinct peptide-level global confidence: Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7681 
7682  /// PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.
7684 
7685  /// PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.
7687 
7688  /// PeptideShaker PSM score: The probability based PeptideShaker PSM score.
7690 
7691  /// PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.
7693 
7694  /// PeptideShaker peptide score: The probability based PeptideShaker peptide score.
7696 
7697  /// PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
7699 
7700  /// PeptideShaker protein group score: The probability based PeptideShaker protein group score.
7702 
7703  /// PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.
7705 
7706  /// trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a trap-type collision cell.
7708 
7709  /// ion series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine.
7711 
7712  /// ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group.
7714 
7715  /// ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to non-canonical gene models only within the group.
7717 
7718  /// ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated.
7720 
7721  /// mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array.
7723 
7724  /// mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum.
7726 
7727  /// regular expression: Regular expression.
7729 
7730  /// regular expression for a digital object identifier (DOI): (10[.][0-9]\{4,\}(?:[.][0-9]+)*/(?:(?!["&\'<>])\S)+).
7732 
7733  /// higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
7735 
7736  /// statistical threshold: Estimated statistical threshold.
7738 
7739  /// PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
7741 
7742  /// peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
7744 
7745  /// protein-level statistical threshold: Estimated statistical threshold at protein-level.
7747 
7748  /// protein group-level statistical threshold: Estimated statistical threshold at protein group-level.
7750 
7751  /// MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7753 
7754  /// MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7756 
7757  /// special processing: Details describing a special processing.
7759 
7760  /// peptide-level scoring: Peptide-level scoring performed.
7762 
7763  /// modification localization scoring: Modification localization scoring performed.
7765 
7766  /// consensus scoring: Consensus multiple search engine approach performed.
7768 
7769  /// sample pre-fractionation: Sample pre-fractionation performed.
7771 
7772  /// cross-linking search: Cross-linking search performed.
7774 
7775  /// no special processing: No special processing performed.
7777 
7778  /// group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
7780 
7781  /// group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifications into account.
7783 
7784  /// group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with taking modifications and charge into account.
7786 
7787  /// peptide level score: Peptide level score.
7789 
7790  /// peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file.
7792 
7793  /// no PSM threshold: Indicating that no PSM threshold was used.
7795 
7796  /// no peptide-level threshold: Indicating that no peptide-level threshold was used.
7798 
7799  /// PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.
7801 
7802  /// order: The order of modifications to be referenced elsewhere in the document.
7803  MS_order = 1002504,
7804 
7805  /// regular expression for modification localization scoring: ([:digit:]+:[0|1]\{1\}.[:digit:]+:[:digit:]+[|:digit:]*:(true|false)\{1\}).
7807 
7808  /// modification position score: Modification position score.
7810 
7811  /// modification rescoring:false localization rate: Mod position score: false localization rate.
7813 
7814  /// cross-linking attribute: Cross-linking attribute.
7816 
7817  /// cross-link donor: The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7819 
7820  /// cross-link receiver: Cross-linking receiver, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7822 
7823  /// cross-link spectrum identification item: Cross-linked spectrum identification item.
7825 
7826  /// cross-linking score: Cross-linking scoring value.
7828 
7829  /// molecules per cell: The absolute abundance of protein in a cell.
7831 
7832  /// absolute quantitation analysis: Absolute quantitation analysis.
7834 
7835  /// internal peptide reference used: States whether an internal peptide reference is used or not in absolute quantitation analysis.
7837 
7838  /// internal protein reference used: States whether an internal protein reference is used or not in absolute quantitation analysis.
7840 
7841  /// internal reference abundance: The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis.
7843 
7844  /// Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups produced by Progenesis LC-MS.
7846 
7847  /// Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Progenesis LC-MS.
7849 
7850  /// unimod root node: The root node of the unimod modifications ontology.
7852 
7853  /// Acetyl: Acetylation.
7854  UNIMOD_Acetyl = 100000001,
7855 
7856  /// Amidated: Amidation.
7857  UNIMOD_Amidated = 100000002,
7858 
7859  /// Biotin: Biotinylation.
7860  UNIMOD_Biotin = 100000003,
7861 
7862  /// Carbamidomethyl: Iodoacetamide derivative.
7864 
7865  /// Carbamyl: Carbamylation.
7866  UNIMOD_Carbamyl = 100000005,
7867 
7868  /// Carboxymethyl: Iodoacetic acid derivative.
7870 
7871  /// Deamidated: Deamidation.
7872  UNIMOD_Deamidated = 100000007,
7873 
7874  /// ICAT-G: Gygi ICAT(TM) d0.
7875  UNIMOD_ICAT_G = 100000008,
7876 
7877  /// ICAT-G:2H(8): Gygi ICAT(TM) d8.
7878  UNIMOD_ICAT_G_2H_8_ = 100000009,
7879 
7880  /// Met->Hse: Homoserine.
7881  UNIMOD_Met__Hse = 100000010,
7882 
7883  /// Met->Hsl: Homoserine lactone.
7884  UNIMOD_Met__Hsl = 100000011,
7885 
7886  /// ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
7887  UNIMOD_ICAT_D_2H_8_ = 100000012,
7888 
7889  /// ICAT-D: Applied Biosystems original ICAT(TM) d0.
7890  UNIMOD_ICAT_D = 100000013,
7891 
7892  /// NIPCAM: N-isopropylcarboxamidomethyl.
7893  UNIMOD_NIPCAM = 100000017,
7894 
7895  /// PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
7897 
7898  /// Phospho: Phosphorylation.
7899  UNIMOD_Phospho = 100000021,
7900 
7901  /// Dehydrated: Dehydration.
7902  UNIMOD_Dehydrated = 100000023,
7903 
7904  /// Propionamide: Acrylamide adduct.
7905  UNIMOD_Propionamide = 100000024,
7906 
7907  /// Pyridylacetyl: Pyridylacetyl.
7909 
7910  /// Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
7912 
7913  /// Glu->pyro-Glu: Pyro-glu from E.
7915 
7916  /// Gln->pyro-Glu: Pyro-glu from Q.
7918 
7919  /// SMA: N-Succinimidyl-2-morpholine acetate.
7920  UNIMOD_SMA = 100000029,
7921 
7922  /// Cation:Na: Sodium adduct.
7923  UNIMOD_Cation_Na = 100000030,
7924 
7925  /// Pyridylethyl: S-pyridylethylation.
7926  UNIMOD_Pyridylethyl = 100000031,
7927 
7928  /// Methyl: Methylation.
7929  UNIMOD_Methyl = 100000034,
7930 
7931  /// Oxidation: Oxidation or Hydroxylation.
7932  UNIMOD_Oxidation = 100000035,
7933 
7934  /// Dimethyl: Di-Methylation.
7935  UNIMOD_Dimethyl = 100000036,
7936 
7937  /// Trimethyl: Tri-Methylation.
7938  UNIMOD_Trimethyl = 100000037,
7939 
7940  /// Methylthio: Beta-methylthiolation.
7941  UNIMOD_Methylthio = 100000039,
7942 
7943  /// Sulfo: O-Sulfonation.
7944  UNIMOD_Sulfo = 100000040,
7945 
7946  /// Hex: Hexose.
7947  UNIMOD_Hex = 100000041,
7948 
7949  /// Lipoyl: Lipoyl.
7950  UNIMOD_Lipoyl = 100000042,
7951 
7952  /// HexNAc: N-Acetylhexosamine.
7953  UNIMOD_HexNAc = 100000043,
7954 
7955  /// Farnesyl: Farnesylation.
7956  UNIMOD_Farnesyl = 100000044,
7957 
7958  /// Myristoyl: Myristoylation.
7959  UNIMOD_Myristoyl = 100000045,
7960 
7961  /// PyridoxalPhosphate: Pyridoxal phosphate.
7963 
7964  /// Palmitoyl: Palmitoylation.
7965  UNIMOD_Palmitoyl = 100000047,
7966 
7967  /// GeranylGeranyl: Geranyl-geranyl.
7969 
7970  /// Phosphopantetheine: Phosphopantetheine.
7972 
7973  /// FAD: Flavin adenine dinucleotide.
7974  UNIMOD_FAD = 100000050,
7975 
7976  /// Tripalmitate: N-acyl diglyceride cysteine.
7977  UNIMOD_Tripalmitate = 100000051,
7978 
7979  /// Guanidinyl: Guanidination.
7980  UNIMOD_Guanidinyl = 100000052,
7981 
7982  /// HNE: 4-hydroxynonenal (HNE).
7983  UNIMOD_HNE = 100000053,
7984 
7985  /// Glucuronyl: N-glucuronylation.
7986  UNIMOD_Glucuronyl = 100000054,
7987 
7988  /// Glutathione: Glutathione disulfide.
7989  UNIMOD_Glutathione = 100000055,
7990 
7991  /// Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
7992  UNIMOD_Acetyl_2H_3_ = 100000056,
7993 
7994  /// Propionyl: Propionate labeling reagent light form (N-term & K).
7995  UNIMOD_Propionyl = 100000058,
7996 
7997  /// Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
7999 
8000  /// GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
8001  UNIMOD_GIST_Quat = 100000060,
8002 
8003  /// GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
8005 
8006  /// GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
8008 
8009  /// GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
8011 
8012  /// Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
8013  UNIMOD_Succinyl = 100000064,
8014 
8015  /// Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
8017 
8018  /// Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
8020 
8021  /// Iminobiotin: Iminobiotinylation.
8022  UNIMOD_Iminobiotin = 100000089,
8023 
8024  /// ESP: ESP-Tag light d0.
8025  UNIMOD_ESP = 100000090,
8026 
8027  /// ESP:2H(10): ESP-Tag heavy d10.
8028  UNIMOD_ESP_2H_10_ = 100000091,
8029 
8030  /// NHS-LC-Biotin: NHS-LC-Biotin.
8032 
8033  /// EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
8035 
8036  /// IMID: IMID d0.
8037  UNIMOD_IMID = 100000094,
8038 
8039  /// IMID:2H(4): IMID d4.
8040  UNIMOD_IMID_2H_4_ = 100000095,
8041 
8042  /// Propionamide:2H(3): Acrylamide d3.
8044 
8045  /// ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
8046  UNIMOD_ICAT_C = 100000105,
8047 
8048  /// ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
8050 
8051  /// FormylMet: Addition of N-formyl met.
8052  UNIMOD_FormylMet = 100000107,
8053 
8054  /// Nethylmaleimide: N-ethylmaleimide on cysteines.
8056 
8057  /// OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
8059 
8060  /// OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
8061  UNIMOD_OxLysBiotin = 100000113,
8062 
8063  /// OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
8065 
8066  /// OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
8067  UNIMOD_OxProBiotin = 100000115,
8068 
8069  /// OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
8070  UNIMOD_OxArgBiotin = 100000116,
8071 
8072  /// OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
8074 
8075  /// EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
8077 
8078  /// IBTP: Thio Ether Formation - BTP Adduct.
8079  UNIMOD_IBTP = 100000119,
8080 
8081  /// GlyGly: Ubiquitinylation residue.
8082  UNIMOD_GlyGly = 100000121,
8083 
8084  /// Formyl: Formylation.
8085  UNIMOD_Formyl = 100000122,
8086 
8087  /// ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
8088  UNIMOD_ICAT_H = 100000123,
8089 
8090  /// ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
8092 
8093  /// Thioacyl: 3-sulfanylpropanoyl.
8094  UNIMOD_Thioacyl = 100000126,
8095 
8096  /// Fluoro: Fluorination.
8097  UNIMOD_Fluoro = 100000127,
8098 
8099  /// Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
8100  UNIMOD_Fluorescein = 100000128,
8101 
8102  /// Iodo: Iodination.
8103  UNIMOD_Iodo = 100000129,
8104 
8105  /// Diiodo: Di-Iodination.
8106  UNIMOD_Diiodo = 100000130,
8107 
8108  /// Triiodo: Tri-Iodination.
8109  UNIMOD_Triiodo = 100000131,
8110 
8111  /// Myristoleyl: (cis-delta 5)-tetradecaenoyl.
8112  UNIMOD_Myristoleyl = 100000134,
8113 
8114  /// Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
8116 
8117  /// Benzoyl: Labeling reagent light form (N-term & K).
8118  UNIMOD_Benzoyl = 100000136,
8119 
8120  /// Hex(5)HexNAc(2): N-linked glycan core.
8122 
8123  /// Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
8124  UNIMOD_Dansyl = 100000139,
8125 
8126  /// a-type-ion: ISD a-series (C-Term).
8127  UNIMOD_a_type_ion = 100000140,
8128 
8129  /// Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
8130  UNIMOD_Amidine = 100000141,
8131 
8132  /// HexNAc(1)dHex(1): HexNAc1dHex1.
8134 
8135  /// HexNAc(2): HexNAc2.
8136  UNIMOD_HexNAc_2_ = 100000143,
8137 
8138  /// Hex(3): Hex3.
8139  UNIMOD_Hex_3_ = 100000144,
8140 
8141  /// HexNAc(1)dHex(2): HexNAc1dHex2.
8143 
8144  /// Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
8146 
8147  /// HexNAc(2)dHex(1): HexNAc2dHex1.
8149 
8150  /// Hex(1)HexNAc(2): Hex1HexNAc2.
8152 
8153  /// Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
8155 
8156  /// HexNAc(2)dHex(2): HexNAc2dHex2.
8158 
8159  /// Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
8161 
8162  /// Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
8164 
8165  /// Hex(2)HexNAc(2): Hex2HexNAc2.
8167 
8168  /// Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
8170 
8171  /// Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
8173 
8174  /// Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
8176 
8177  /// Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
8179 
8180  /// Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
8182 
8183  /// Hex(3)HexNAc(2): Hex3HexNAc2.
8185 
8186  /// Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.
8188 
8189  /// Hex(3)HexNAc(2)P(1): Hex3HexNAc2P1.
8191 
8192  /// Delta:S(-1)Se(1): Selenium replaces sulfur.
8194 
8195  /// Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
8197 
8198  /// NBS:13C(6): Shimadzu NBS-13C.
8199  UNIMOD_NBS_13C_6_ = 100000171,
8200 
8201  /// NBS: Shimadzu NBS-12C.
8202  UNIMOD_NBS = 100000172,
8203 
8204  /// BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
8205  UNIMOD_BHT = 100000176,
8206 
8207  /// DAET: Phosphorylation to amine thiol.
8208  UNIMOD_DAET = 100000178,
8209 
8210  /// Label:13C(9): 13C(9) Silac label.
8211  UNIMOD_Label_13C_9_ = 100000184,
8212 
8213  /// Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
8215 
8216  /// HPG: Hydroxyphenylglyoxal arginine.
8217  UNIMOD_HPG = 100000186,
8218 
8219  /// 2HPG: Bis(hydroxphenylglyoxal) arginine.
8220  UNIMOD_2HPG = 100000187,
8221 
8222  /// Label:13C(6): 13C(6) Silac label.
8223  UNIMOD_Label_13C_6_ = 100000188,
8224 
8225  /// Label:18O(2): O18 label at both C-terminal oxygens.
8226  UNIMOD_Label_18O_2_ = 100000193,
8227 
8228  /// AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
8229  UNIMOD_AccQTag = 100000194,
8230 
8231  /// QAT: APTA-d0.
8232  UNIMOD_QAT = 100000195,
8233 
8234  /// QAT:2H(3): APTA d3.
8235  UNIMOD_QAT_2H_3_ = 100000196,
8236 
8237  /// EQAT: EAPTA d0.
8238  UNIMOD_EQAT = 100000197,
8239 
8240  /// EQAT:2H(5): EAPTA d5.
8241  UNIMOD_EQAT_2H_5_ = 100000198,
8242 
8243  /// Dimethyl:2H(4): DiMethyl-CHD2.
8245 
8246  /// Ethanedithiol: EDT.
8248 
8249  /// Delta:H(6)C(6)O(1): Acrolein addition +94.
8251 
8252  /// Delta:H(4)C(3)O(1): Acrolein addition +56.
8254 
8255  /// Delta:H(2)C(3): Acrolein addition +38.
8257 
8258  /// Delta:H(4)C(6): Acrolein addition +76.
8260 
8261  /// Delta:H(8)C(6)O(2): Acrolein addition +112.
8263 
8264  /// NEIAA: N-ethyl iodoacetamide-d0.
8265  UNIMOD_NEIAA = 100000211,
8266 
8267  /// NEIAA:2H(5): N-ethyl iodoacetamide-d5.
8268  UNIMOD_NEIAA_2H_5_ = 100000212,
8269 
8270  /// ADP-Ribosyl: ADP Ribose addition.
8271  UNIMOD_ADP_Ribosyl = 100000213,
8272 
8273  /// iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
8274  UNIMOD_iTRAQ4plex = 100000214,
8275 
8276  /// IGBP: Light IDBEST tag for quantitation.
8277  UNIMOD_IGBP = 100000243,
8278 
8279  /// Crotonaldehyde: Crotonaldehyde.
8281 
8282  /// Delta:H(2)C(2): Acetaldehyde +26.
8284 
8285  /// Delta:H(4)C(2): Acetaldehyde +28.
8287 
8288  /// Delta:H(4)C(3): Propionaldehyde +40.
8290 
8291  /// Label:18O(1): O18 Labeling.
8292  UNIMOD_Label_18O_1_ = 100000258,
8293 
8294  /// Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
8296 
8297  /// Thiophospho: Thiophosphorylation.
8298  UNIMOD_Thiophospho = 100000260,
8299 
8300  /// SPITC: 4-sulfophenyl isothiocyanate.
8301  UNIMOD_SPITC = 100000261,
8302 
8303  /// Label:2H(3): Trideuteration.
8304  UNIMOD_Label_2H_3_ = 100000262,
8305 
8306  /// PET: Phosphorylation to pyridyl thiol.
8307  UNIMOD_PET = 100000264,
8308 
8309  /// Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
8311 
8312  /// Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
8314 
8315  /// Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
8317 
8318  /// Cytopiloyne: Nucleophilic addtion to cytopiloyne.
8319  UNIMOD_Cytopiloyne = 100000270,
8320 
8321  /// Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
8323 
8324  /// CAF: Sulfonation of N-terminus.
8325  UNIMOD_CAF = 100000272,
8326 
8327  /// Xlink:SSD: Covalent modification of lysine by cross-linking reagent.
8328  UNIMOD_Xlink_SSD = 100000273,
8329 
8330  /// Nitrosyl: S-nitrosylation.
8331  UNIMOD_Nitrosyl = 100000275,
8332 
8333  /// AEBS: Aminoethylbenzenesulfonylation.
8334  UNIMOD_AEBS = 100000276,
8335 
8336  /// Ethanolyl: Ethanolation.
8337  UNIMOD_Ethanolyl = 100000278,
8338 
8339  /// Ethyl: Ethylation.
8340  UNIMOD_Ethyl = 100000280,
8341 
8342  /// CoenzymeA: Cysteine modified Coenzyme A.
8343  UNIMOD_CoenzymeA = 100000281,
8344 
8345  /// Methyl:2H(2): Deuterium Methylation of Lysine.
8346  UNIMOD_Methyl_2H_2_ = 100000284,
8347 
8348  /// SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
8350 
8351  /// SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
8353 
8354  /// Trp->Oxolactone: Tryptophan oxidation to oxolactone.
8356 
8357  /// Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
8359 
8360  /// Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
8361  UNIMOD_Biotin_HPDP = 100000290,
8362 
8363  /// Delta:Hg(1): Mercury Mercaptan.
8364  UNIMOD_Delta_Hg_1_ = 100000291,
8365 
8366  /// IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.
8367  UNIMOD_IodoU_AMP = 100000292,
8368 
8369  /// CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
8371 
8372  /// IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
8373  UNIMOD_IED_Biotin = 100000294,
8374 
8375  /// dHex: Fucose.
8376  UNIMOD_dHex = 100000295,
8377 
8378  /// Methyl:2H(3): Deuterated methyl ester.
8379  UNIMOD_Methyl_2H_3_ = 100000298,
8380 
8381  /// Carboxy: Carboxylation.
8382  UNIMOD_Carboxy = 100000299,
8383 
8384  /// Bromobimane: Monobromobimane derivative.
8385  UNIMOD_Bromobimane = 100000301,
8386 
8387  /// Menadione: Menadione quinone derivative.
8388  UNIMOD_Menadione = 100000302,
8389 
8390  /// DeStreak: Cysteine mercaptoethanol.
8391  UNIMOD_DeStreak = 100000303,
8392 
8393  /// dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
8395 
8396  /// dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).
8398 
8399  /// dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
8401 
8402  /// Hex(3)HexNAc(4): Biantennary (-2 galactose).
8404 
8405  /// Hex(4)HexNAc(4): Biantennary (-1 galactose).
8407 
8408  /// Hex(5)HexNAc(4): Biantennary.
8410 
8411  /// Cysteinyl: Cysteinylation.
8412  UNIMOD_Cysteinyl = 100000312,
8413 
8414  /// Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
8415  UNIMOD_Lys_loss = 100000313,
8416 
8417  /// Nmethylmaleimide: Nmethylmaleimide.
8419 
8420  /// DimethylpyrroleAdduct: 2,5-dimethypyrrole.
8422 
8423  /// Delta:H(2)C(5): MDA adduct +62.
8425 
8426  /// Delta:H(2)C(3)O(1): MDA adduct +54.
8428 
8429  /// Nethylmaleimide+water: Nethylmaleimidehydrolysis.
8431 
8432  /// Xlink:B10621: Bis-N-I-sulfonerahodamine.
8433  UNIMOD_Xlink_B10621 = 100000323,
8434 
8435  /// DTBP: Dimethyl 3,3\'-dithiobispropionimidate.
8436  UNIMOD_DTBP = 100000324,
8437 
8438  /// FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
8439  UNIMOD_FP_Biotin = 100000325,
8440 
8441  /// Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
8443 
8444  /// Methyl:2H(3)13C(1): Monomethylated arginine.
8446 
8447  /// Dimethyl:2H(6)13C(2): Dimethylated arginine.
8449 
8450  /// Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
8452 
8453  /// Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
8455 
8456  /// HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
8458 
8459  /// Methylamine: Michael addition with methylamine.
8460  UNIMOD_Methylamine = 100000337,
8461 
8462  /// Bromo: Bromination.
8463  UNIMOD_Bromo = 100000340,
8464 
8465  /// Amino: Tyrosine oxidation to 2-aminotyrosine.
8466  UNIMOD_Amino = 100000342,
8467 
8468  /// Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
8470 
8471  /// Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
8472  UNIMOD_Arg__GluSA = 100000344,
8473 
8474  /// Trioxidation: Cysteine oxidation to cysteic acid.
8475  UNIMOD_Trioxidation = 100000345,
8476 
8477  /// His->Asn: His->Asn substitution.
8478  UNIMOD_His__Asn = 100000348,
8479 
8480  /// His->Asp: His->Asp substitution.
8481  UNIMOD_His__Asp = 100000349,
8482 
8483  /// Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
8485 
8486  /// Trp->Kynurenin: Tryptophan oxidation to kynurenin.
8488 
8489  /// Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
8491 
8492  /// Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
8494 
8495  /// Nitro: Oxidation to nitro.
8496  UNIMOD_Nitro = 100000354,
8497 
8498  /// probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
8500 
8501  /// Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
8503 
8504  /// Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
8506 
8507  /// Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
8509 
8510  /// Diisopropylphosphate: O-Diisopropylphosphorylation.
8512 
8513  /// Isopropylphospho: O-Isopropylphosphorylation.
8515 
8516  /// ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
8517  UNIMOD_ICPL_13C_6_ = 100000364,
8518 
8519  /// ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
8520  UNIMOD_ICPL = 100000365,
8521 
8522  /// Deamidated:18O(1): Deamidation in presence of O18.
8524 
8525  /// Cys->Dha: Dehydroalanine (from Cysteine).
8526  UNIMOD_Cys__Dha = 100000368,
8527 
8528  /// Pro->Pyrrolidone: Pyrrolidone from Proline.
8530 
8531  /// HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
8532  UNIMOD_HMVK = 100000371,
8533 
8534  /// Arg->Orn: Ornithine from Arginine.
8535  UNIMOD_Arg__Orn = 100000372,
8536 
8537  /// Dehydro: Half of a disulfide bridge.
8538  UNIMOD_Dehydro = 100000374,
8539 
8540  /// Diphthamide: Diphthamide.
8541  UNIMOD_Diphthamide = 100000375,
8542 
8543  /// Hydroxyfarnesyl: Hydroxyfarnesyl.
8545 
8546  /// Diacylglycerol: Diacylglycerol.
8548 
8549  /// Carboxyethyl: Carboxyethyl.
8550  UNIMOD_Carboxyethyl = 100000378,
8551 
8552  /// Hypusine: Hypusine.
8553  UNIMOD_Hypusine = 100000379,
8554 
8555  /// Retinylidene: Retinal.
8556  UNIMOD_Retinylidene = 100000380,
8557 
8558  /// Lys->AminoadipicAcid: Alpha-amino adipic acid.
8560 
8561  /// Cys->PyruvicAcid: Pyruvic acid from N-term cys.
8563 
8564  /// Ammonia-loss: Loss of ammonia.
8565  UNIMOD_Ammonia_loss = 100000385,
8566 
8567  /// Phycocyanobilin: Phycocyanobilin.
8569 
8570  /// Phycoerythrobilin: Phycoerythrobilin.
8572 
8573  /// Phytochromobilin: Phytochromobilin.
8575 
8576  /// Heme: Heme.
8577  UNIMOD_Heme = 100000390,
8578 
8579  /// Molybdopterin: Molybdopterin.
8581 
8582  /// Quinone: Quinone.
8583  UNIMOD_Quinone = 100000392,
8584 
8585  /// Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
8587 
8588  /// GPIanchor: Glycosylphosphatidylinositol.
8589  UNIMOD_GPIanchor = 100000394,
8590 
8591  /// PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
8593 
8594  /// GlycerylPE: Glycerylphosphorylethanolamine.
8595  UNIMOD_GlycerylPE = 100000396,
8596 
8597  /// Triiodothyronine: Triiodo.
8599 
8600  /// Thyroxine: Tetraiodo.
8601  UNIMOD_Thyroxine = 100000398,
8602 
8603  /// Tyr->Dha: Dehydroalanine (from Tyrosine).
8604  UNIMOD_Tyr__Dha = 100000400,
8605 
8606  /// Didehydro: 2-amino-3-oxo-butanoic_acid.
8607  UNIMOD_Didehydro = 100000401,
8608 
8609  /// Cys->Oxoalanine: Oxoalanine.
8611 
8612  /// Ser->LacticAcid: Lactic acid from N-term Ser.
8614 
8615  /// Phosphoadenosine: AMP binding site.
8617 
8618  /// Hydroxycinnamyl: Hydroxycinnamyl.
8620 
8621  /// Glycosyl: Glycosyl-L-hydroxyproline.
8622  UNIMOD_Glycosyl = 100000408,
8623 
8624  /// FMNH: Flavin mononucleotide.
8625  UNIMOD_FMNH = 100000409,
8626 
8627  /// Archaeol: S-diphytanylglycerol diether.
8628  UNIMOD_Archaeol = 100000410,
8629 
8630  /// Phenylisocyanate: Phenyl isocyanate.
8632 
8633  /// Phenylisocyanate:2H(5): D5-phenyl isocyanate.
8635 
8636  /// Phosphoguanosine: Phospho-guanosine.
8638 
8639  /// Hydroxymethyl: Hydroxymethyl.
8641 
8642  /// MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
8644 
8645  /// Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
8647 
8648  /// PhosphoUridine: Uridine phosphodiester.
8650 
8651  /// Glycerophospho: Glycerophospho.
8653 
8654  /// Carboxy->Thiocarboxy: Thiocarboxylic acid.
8656 
8657  /// Sulfide: Persulfide.
8658  UNIMOD_Sulfide = 100000421,
8659 
8660  /// PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
8662 
8663  /// Delta:Se(1): Selenyl.
8664  UNIMOD_Delta_Se_1_ = 100000423,
8665 
8666  /// MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
8668 
8669  /// Dioxidation: Dihydroxy.
8670  UNIMOD_Dioxidation = 100000425,
8671 
8672  /// Octanoyl: Octanoyl.
8673  UNIMOD_Octanoyl = 100000426,
8674 
8675  /// PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
8677 
8678  /// PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
8679  UNIMOD_PhosphoHex = 100000429,
8680 
8681  /// Palmitoleyl: Palmitoleyl.
8682  UNIMOD_Palmitoleyl = 100000431,
8683 
8684  /// Cholesterol: Cholesterol ester.
8685  UNIMOD_Cholesterol = 100000432,
8686 
8687  /// Didehydroretinylidene: 3,4-didehydroretinylidene.
8689 
8690  /// CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
8691  UNIMOD_CHDH = 100000434,
8692 
8693  /// Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
8695 
8696  /// Hydroxyheme: Hydroxyheme.
8697  UNIMOD_Hydroxyheme = 100000436,
8698 
8699  /// MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
8700  UNIMOD_MicrocinC7 = 100000437,
8701 
8702  /// Cyano: Cyano.
8703  UNIMOD_Cyano = 100000438,
8704 
8705  /// Diironsubcluster: Hydrogenase diiron subcluster.
8707 
8708  /// Amidino: Amidino.
8709  UNIMOD_Amidino = 100000440,
8710 
8711  /// FMN: O3-(riboflavin phosphoryl).
8712  UNIMOD_FMN = 100000442,
8713 
8714  /// FMNC: S-(4a-FMN).
8715  UNIMOD_FMNC = 100000443,
8716 
8717  /// CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
8718  UNIMOD_CuSMo = 100000444,
8719 
8720  /// Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
8722 
8723  /// Deoxy: Reduction.
8724  UNIMOD_Deoxy = 100000447,
8725 
8726  /// Microcin: Microcin E492 siderophore ester from serine.
8727  UNIMOD_Microcin = 100000448,
8728 
8729  /// Decanoyl: Lipid.
8730  UNIMOD_Decanoyl = 100000449,
8731 
8732  /// Glu: Monoglutamyl.
8733  UNIMOD_Glu = 100000450,
8734 
8735  /// GluGlu: Diglutamyl.
8736  UNIMOD_GluGlu = 100000451,
8737 
8738  /// GluGluGlu: Triglutamyl.
8739  UNIMOD_GluGluGlu = 100000452,
8740 
8741  /// GluGluGluGlu: Tetraglutamyl.
8742  UNIMOD_GluGluGluGlu = 100000453,
8743 
8744  /// HexN: Hexosamine.
8745  UNIMOD_HexN = 100000454,
8746 
8747  /// Xlink:DMP-s: One end of crosslink attached, one end free.
8748  UNIMOD_Xlink_DMP_s = 100000455,
8749 
8750  /// Xlink:DMP: Both ends of crosslink attached to same peptide.
8751  UNIMOD_Xlink_DMP = 100000456,
8752 
8753  /// NDA: Naphthalene-2,3-dicarboxaldehyde.
8754  UNIMOD_NDA = 100000457,
8755 
8756  /// SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
8757  UNIMOD_SPITC_13C_6_ = 100000464,
8758 
8759  /// AEC-MAEC: Aminoethylcysteine.
8760  UNIMOD_AEC_MAEC = 100000472,
8761 
8762  /// TMAB: 4-trimethyllammoniumbutyryl-.
8763  UNIMOD_TMAB = 100000476,
8764 
8765  /// TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
8766  UNIMOD_TMAB_2H_9_ = 100000477,
8767 
8768  /// FTC: Fluorescein-5-thiosemicarbazide.
8769  UNIMOD_FTC = 100000478,
8770 
8771  /// Label:2H(4): 4,4,5,5-D4 Lysine.
8772  UNIMOD_Label_2H_4_ = 100000481,
8773 
8774  /// DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
8775  UNIMOD_DHP = 100000488,
8776 
8777  /// Hep: Heptose.
8778  UNIMOD_Hep = 100000490,
8779 
8780  /// BADGE: Bisphenol A diglycidyl ether derivative.
8781  UNIMOD_BADGE = 100000493,
8782 
8783  /// CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
8784  UNIMOD_CyDye_Cy3 = 100000494,
8785 
8786  /// CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
8787  UNIMOD_CyDye_Cy5 = 100000495,
8788 
8789  /// BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
8790  UNIMOD_BHTOH = 100000498,
8791 
8792  /// IGBP:13C(2): Heavy IDBEST tag for quantitation.
8793  UNIMOD_IGBP_13C_2_ = 100000499,
8794 
8795  /// Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
8797 
8798  /// PyMIC: 3-methyl-2-pyridyl isocyanate.
8799  UNIMOD_PyMIC = 100000501,
8800 
8801  /// LG-lactam-K: Levuglandinyl - lysine lactam adduct.
8802  UNIMOD_LG_lactam_K = 100000503,
8803 
8804  /// LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
8805  UNIMOD_LG_Hlactam_K = 100000504,
8806 
8807  /// LG-lactam-R: Levuglandinyl - arginine lactam adduct.
8808  UNIMOD_LG_lactam_R = 100000505,
8809 
8810  /// LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
8811  UNIMOD_LG_Hlactam_R = 100000506,
8812 
8813  /// Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
8815 
8816  /// Hex(2): Lactosylation.
8817  UNIMOD_Hex_2_ = 100000512,
8818 
8819  /// C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
8820  UNIMOD_C8_QAT = 100000513,
8821 
8822  /// PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
8824 
8825  /// FNEM: Fluorescein-5-maleimide.
8826  UNIMOD_FNEM = 100000515,
8827 
8828  /// Diethyl: Diethylation, analogous to Dimethylation.
8829  UNIMOD_Diethyl = 100000518,
8830 
8831  /// BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
8832  UNIMOD_BisANS = 100000519,
8833 
8834  /// Piperidine: Piperidination.
8835  UNIMOD_Piperidine = 100000520,
8836 
8837  /// Maleimide-PEO2-Biotin: Maleimide-Biotin.
8839 
8840  /// Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
8842 
8843  /// CLIP_TRAQ_2: CLIP_TRAQ_2.
8844  UNIMOD_CLIP_TRAQ_2 = 100000525,
8845 
8846  /// Dethiomethyl: Prompt loss of side chain from oxidised Met.
8847  UNIMOD_Dethiomethyl = 100000526,
8848 
8849  /// Methyl+Deamidated: Deamidation followed by a methylation.
8851 
8852  /// Delta:H(5)C(2): Dimethylation of proline residue.
8854 
8855  /// Cation:K: Replacement of proton by potassium.
8856  UNIMOD_Cation_K = 100000530,
8857 
8858  /// Cation:Cu[I]: Replacement of proton by copper.
8859  UNIMOD_Cation_Cu_I_ = 100000531,
8860 
8861  /// iTRAQ4plex114: Accurate mass for 114.
8863 
8864  /// iTRAQ4plex115: Accurate mass for 115.
8866 
8867  /// Dibromo: Dibromo.
8868  UNIMOD_Dibromo = 100000534,
8869 
8870  /// LeuArgGlyGly: Ubiquitination.
8871  UNIMOD_LeuArgGlyGly = 100000535,
8872 
8873  /// CLIP_TRAQ_3: CLIP_TRAQ_3.
8874  UNIMOD_CLIP_TRAQ_3 = 100000536,
8875 
8876  /// CLIP_TRAQ_4: CLIP_TRAQ_4.
8877  UNIMOD_CLIP_TRAQ_4 = 100000537,
8878 
8879  /// Biotin:Cayman-10141: Was 15dB-biotin.
8881 
8882  /// Biotin:Cayman-10013: Was PGA1-biotin.
8884 
8885  /// Ala->Ser: Ala->Ser substitution.
8886  UNIMOD_Ala__Ser = 100000540,
8887 
8888  /// Ala->Thr: Ala->Thr substitution.
8889  UNIMOD_Ala__Thr = 100000541,
8890 
8891  /// Ala->Asp: Ala->Asp substitution.
8892  UNIMOD_Ala__Asp = 100000542,
8893 
8894  /// Ala->Pro: Ala->Pro substitution.
8895  UNIMOD_Ala__Pro = 100000543,
8896 
8897  /// Ala->Gly: Ala->Gly substitution.
8898  UNIMOD_Ala__Gly = 100000544,
8899 
8900  /// Ala->Glu: Ala->Glu substitution.
8901  UNIMOD_Ala__Glu = 100000545,
8902 
8903  /// Ala->Val: Ala->Val substitution.
8904  UNIMOD_Ala__Val = 100000546,
8905 
8906  /// Cys->Phe: Cys->Phe substitution.
8907  UNIMOD_Cys__Phe = 100000547,
8908 
8909  /// Cys->Ser: Cys->Ser substitution.
8910  UNIMOD_Cys__Ser = 100000548,
8911 
8912  /// Cys->Trp: Cys->Trp substitution.
8913  UNIMOD_Cys__Trp = 100000549,
8914 
8915  /// Cys->Tyr: Cys->Tyr substitution.
8916  UNIMOD_Cys__Tyr = 100000550,
8917 
8918  /// Cys->Arg: Cys->Arg substitution.
8919  UNIMOD_Cys__Arg = 100000551,
8920 
8921  /// Cys->Gly: Cys->Gly substitution.
8922  UNIMOD_Cys__Gly = 100000552,
8923 
8924  /// Asp->Ala: Asp->Ala substitution.
8925  UNIMOD_Asp__Ala = 100000553,
8926 
8927  /// Asp->His: Asp->His substitution.
8928  UNIMOD_Asp__His = 100000554,
8929 
8930  /// Asp->Asn: Asp->Asn substitution.
8931  UNIMOD_Asp__Asn = 100000555,
8932 
8933  /// Asp->Gly: Asp->Gly substitution.
8934  UNIMOD_Asp__Gly = 100000556,
8935 
8936  /// Asp->Tyr: Asp->Tyr substitution.
8937  UNIMOD_Asp__Tyr = 100000557,
8938 
8939  /// Asp->Glu: Asp->Glu substitution.
8940  UNIMOD_Asp__Glu = 100000558,
8941 
8942  /// Asp->Val: Asp->Val substitution.
8943  UNIMOD_Asp__Val = 100000559,
8944 
8945  /// Glu->Ala: Glu->Ala substitution.
8946  UNIMOD_Glu__Ala = 100000560,
8947 
8948  /// Glu->Gln: Glu->Gln substitution.
8949  UNIMOD_Glu__Gln = 100000561,
8950 
8951  /// Glu->Asp: Glu->Asp substitution.
8952  UNIMOD_Glu__Asp = 100000562,
8953 
8954  /// Glu->Lys: Glu->Lys substitution.
8955  UNIMOD_Glu__Lys = 100000563,
8956 
8957  /// Glu->Gly: Glu->Gly substitution.
8958  UNIMOD_Glu__Gly = 100000564,
8959 
8960  /// Glu->Val: Glu->Val substitution.
8961  UNIMOD_Glu__Val = 100000565,
8962 
8963  /// Phe->Ser: Phe->Ser substitution.
8964  UNIMOD_Phe__Ser = 100000566,
8965 
8966  /// Phe->Cys: Phe->Cys substitution.
8967  UNIMOD_Phe__Cys = 100000567,
8968 
8969  /// Phe->Xle: Phe->Leu/Ile substitution.
8970  UNIMOD_Phe__Xle = 100000568,
8971 
8972  /// Phe->Tyr: Phe->Tyr substitution.
8973  UNIMOD_Phe__Tyr = 100000569,
8974 
8975  /// Phe->Val: Phe->Val substitution.
8976  UNIMOD_Phe__Val = 100000570,
8977 
8978  /// Gly->Ala: Gly->Ala substitution.
8979  UNIMOD_Gly__Ala = 100000571,
8980 
8981  /// Gly->Ser: Gly->Ser substitution.
8982  UNIMOD_Gly__Ser = 100000572,
8983 
8984  /// Gly->Trp: Gly->Trp substitution.
8985  UNIMOD_Gly__Trp = 100000573,
8986 
8987  /// Gly->Glu: Gly->Glu substitution.
8988  UNIMOD_Gly__Glu = 100000574,
8989 
8990  /// Gly->Val: Gly->Val substitution.
8991  UNIMOD_Gly__Val = 100000575,
8992 
8993  /// Gly->Asp: Gly->Asp substitution.
8994  UNIMOD_Gly__Asp = 100000576,
8995 
8996  /// Gly->Cys: Gly->Cys substitution.
8997  UNIMOD_Gly__Cys = 100000577,
8998 
8999  /// Gly->Arg: Gly->Arg substitution.
9000  UNIMOD_Gly__Arg = 100000578,
9001 
9002  /// His->Pro: His->Pro substitution.
9003  UNIMOD_His__Pro = 100000580,
9004 
9005  /// His->Tyr: His->Tyr substitution.
9006  UNIMOD_His__Tyr = 100000581,
9007 
9008  /// His->Gln: His->Gln substitution.
9009  UNIMOD_His__Gln = 100000582,
9010 
9011  /// His->Arg: His->Arg substitution.
9012  UNIMOD_His__Arg = 100000584,
9013 
9014  /// His->Xle: His->Leu/Ile substitution.
9015  UNIMOD_His__Xle = 100000585,
9016 
9017  /// Xle->Thr: Leu/Ile->Thr substitution.
9018  UNIMOD_Xle__Thr = 100000588,
9019 
9020  /// Xle->Asn: Leu/Ile->Asn substitution.
9021  UNIMOD_Xle__Asn = 100000589,
9022 
9023  /// Xle->Lys: Leu/Ile->Lys substitution.
9024  UNIMOD_Xle__Lys = 100000590,
9025 
9026  /// Lys->Thr: Lys->Thr substitution.
9027  UNIMOD_Lys__Thr = 100000594,
9028 
9029  /// Lys->Asn: Lys->Asn substitution.
9030  UNIMOD_Lys__Asn = 100000595,
9031 
9032  /// Lys->Glu: Lys->Glu substitution.
9033  UNIMOD_Lys__Glu = 100000596,
9034 
9035  /// Lys->Gln: Lys->Gln substitution.
9036  UNIMOD_Lys__Gln = 100000597,
9037 
9038  /// Lys->Met: Lys->Met substitution.
9039  UNIMOD_Lys__Met = 100000598,
9040 
9041  /// Lys->Arg: Lys->Arg substitution.
9042  UNIMOD_Lys__Arg = 100000599,
9043 
9044  /// Lys->Xle: Lys->Leu/Ile substitution.
9045  UNIMOD_Lys__Xle = 100000600,
9046 
9047  /// Xle->Ser: Leu/Ile->Ser substitution.
9048  UNIMOD_Xle__Ser = 100000601,
9049 
9050  /// Xle->Phe: Leu/Ile->Phe substitution.
9051  UNIMOD_Xle__Phe = 100000602,
9052 
9053  /// Xle->Trp: Leu/Ile->Trp substitution.
9054  UNIMOD_Xle__Trp = 100000603,
9055 
9056  /// Xle->Pro: Leu/Ile->Pro substitution.
9057  UNIMOD_Xle__Pro = 100000604,
9058 
9059  /// Xle->Val: Leu/Ile->Val substitution.
9060  UNIMOD_Xle__Val = 100000605,
9061 
9062  /// Xle->His: Leu/Ile->His substitution.
9063  UNIMOD_Xle__His = 100000606,
9064 
9065  /// Xle->Gln: Leu/Ile->Gln substitution.
9066  UNIMOD_Xle__Gln = 100000607,
9067 
9068  /// Xle->Met: Leu/Ile->Met substitution.
9069  UNIMOD_Xle__Met = 100000608,
9070 
9071  /// Xle->Arg: Leu/Ile->Arg substitution.
9072  UNIMOD_Xle__Arg = 100000609,
9073 
9074  /// Met->Thr: Met->Thr substitution.
9075  UNIMOD_Met__Thr = 100000610,
9076 
9077  /// Met->Arg: Met->Arg substitution.
9078  UNIMOD_Met__Arg = 100000611,
9079 
9080  /// Met->Lys: Met->Lys substitution.
9081  UNIMOD_Met__Lys = 100000613,
9082 
9083  /// Met->Xle: Met->Leu/Ile substitution.
9084  UNIMOD_Met__Xle = 100000614,
9085 
9086  /// Met->Val: Met->Val substitution.
9087  UNIMOD_Met__Val = 100000615,
9088 
9089  /// Asn->Ser: Asn->Ser substitution.
9090  UNIMOD_Asn__Ser = 100000616,
9091 
9092  /// Asn->Thr: Asn->Thr substitution.
9093  UNIMOD_Asn__Thr = 100000617,
9094 
9095  /// Asn->Lys: Asn->Lys substitution.
9096  UNIMOD_Asn__Lys = 100000618,
9097 
9098  /// Asn->Tyr: Asn->Tyr substitution.
9099  UNIMOD_Asn__Tyr = 100000619,
9100 
9101  /// Asn->His: Asn->His substitution.
9102  UNIMOD_Asn__His = 100000620,
9103 
9104  /// Asn->Asp: Asn->Asp substitution.
9105  UNIMOD_Asn__Asp = 100000621,
9106 
9107  /// Asn->Xle: Asn->Leu/Ile substitution.
9108  UNIMOD_Asn__Xle = 100000622,
9109 
9110  /// Pro->Ser: Pro->Ser substitution.
9111  UNIMOD_Pro__Ser = 100000623,
9112 
9113  /// Pro->Ala: Pro->Ala substitution.
9114  UNIMOD_Pro__Ala = 100000624,
9115 
9116  /// Pro->His: Pro->His substitution.
9117  UNIMOD_Pro__His = 100000625,
9118 
9119  /// Pro->Gln: Pro->Gln substitution.
9120  UNIMOD_Pro__Gln = 100000626,
9121 
9122  /// Pro->Thr: Pro->Thr substitution.
9123  UNIMOD_Pro__Thr = 100000627,
9124 
9125  /// Pro->Arg: Pro->Arg substitution.
9126  UNIMOD_Pro__Arg = 100000628,
9127 
9128  /// Pro->Xle: Pro->Leu/Ile substitution.
9129  UNIMOD_Pro__Xle = 100000629,
9130 
9131  /// Gln->Pro: Gln->Pro substitution.
9132  UNIMOD_Gln__Pro = 100000630,
9133 
9134  /// Gln->Lys: Gln->Lys substitution.
9135  UNIMOD_Gln__Lys = 100000631,
9136 
9137  /// Gln->Glu: Gln->Glu substitution.
9138  UNIMOD_Gln__Glu = 100000632,
9139 
9140  /// Gln->His: Gln->His substitution.
9141  UNIMOD_Gln__His = 100000633,
9142 
9143  /// Gln->Arg: Gln->Arg substitution.
9144  UNIMOD_Gln__Arg = 100000634,
9145 
9146  /// Gln->Xle: Gln->Leu/Ile substitution.
9147  UNIMOD_Gln__Xle = 100000635,
9148 
9149  /// Arg->Ser: Arg->Ser substitution.
9150  UNIMOD_Arg__Ser = 100000636,
9151 
9152  /// Arg->Trp: Arg->Trp substitution.
9153  UNIMOD_Arg__Trp = 100000637,
9154 
9155  /// Arg->Thr: Arg->Thr substitution.
9156  UNIMOD_Arg__Thr = 100000638,
9157 
9158  /// Arg->Pro: Arg->Pro substitution.
9159  UNIMOD_Arg__Pro = 100000639,
9160 
9161  /// Arg->Lys: Arg->Lys substitution.
9162  UNIMOD_Arg__Lys = 100000640,
9163 
9164  /// Arg->His: Arg->His substitution.
9165  UNIMOD_Arg__His = 100000641,
9166 
9167  /// Arg->Gln: Arg->Gln substitution.
9168  UNIMOD_Arg__Gln = 100000642,
9169 
9170  /// Arg->Met: Arg->Met substitution.
9171  UNIMOD_Arg__Met = 100000643,
9172 
9173  /// Arg->Cys: Arg->Cys substitution.
9174  UNIMOD_Arg__Cys = 100000644,
9175 
9176  /// Arg->Xle: Arg->Leu/Ile substitution.
9177  UNIMOD_Arg__Xle = 100000645,
9178 
9179  /// Arg->Gly: Arg->Gly substitution.
9180  UNIMOD_Arg__Gly = 100000646,
9181 
9182  /// Ser->Phe: Ser->Phe substitution.
9183  UNIMOD_Ser__Phe = 100000647,
9184 
9185  /// Ser->Ala: Ser->Ala substitution.
9186  UNIMOD_Ser__Ala = 100000648,
9187 
9188  /// Ser->Trp: Ser->Trp substitution.
9189  UNIMOD_Ser__Trp = 100000649,
9190 
9191  /// Ser->Thr: Ser->Thr substitution.
9192  UNIMOD_Ser__Thr = 100000650,
9193 
9194  /// Ser->Asn: Ser->Asn substitution.
9195  UNIMOD_Ser__Asn = 100000651,
9196 
9197  /// Ser->Pro: Ser->Pro substitution.
9198  UNIMOD_Ser__Pro = 100000652,
9199 
9200  /// Ser->Tyr: Ser->Tyr substitution.
9201  UNIMOD_Ser__Tyr = 100000653,
9202 
9203  /// Ser->Cys: Ser->Cys substitution.
9204  UNIMOD_Ser__Cys = 100000654,
9205 
9206  /// Ser->Arg: Ser->Arg substitution.
9207  UNIMOD_Ser__Arg = 100000655,
9208 
9209  /// Ser->Xle: Ser->Leu/Ile substitution.
9210  UNIMOD_Ser__Xle = 100000656,
9211 
9212  /// Ser->Gly: Ser->Gly substitution.
9213  UNIMOD_Ser__Gly = 100000657,
9214 
9215  /// Thr->Ser: Thr->Ser substitution.
9216  UNIMOD_Thr__Ser = 100000658,
9217 
9218  /// Thr->Ala: Thr->Ala substitution.
9219  UNIMOD_Thr__Ala = 100000659,
9220 
9221  /// Thr->Asn: Thr->Asn substitution.
9222  UNIMOD_Thr__Asn = 100000660,
9223 
9224  /// Thr->Lys: Thr->Lys substitution.
9225  UNIMOD_Thr__Lys = 100000661,
9226 
9227  /// Thr->Pro: Thr->Pro substitution.
9228  UNIMOD_Thr__Pro = 100000662,
9229 
9230  /// Thr->Met: Thr->Met substitution.
9231  UNIMOD_Thr__Met = 100000663,
9232 
9233  /// Thr->Xle: Thr->Leu/Ile substitution.
9234  UNIMOD_Thr__Xle = 100000664,
9235 
9236  /// Thr->Arg: Thr->Arg substitution.
9237  UNIMOD_Thr__Arg = 100000665,
9238 
9239  /// Val->Phe: Val->Phe substitution.
9240  UNIMOD_Val__Phe = 100000666,
9241 
9242  /// Val->Ala: Val->Ala substitution.
9243  UNIMOD_Val__Ala = 100000667,
9244 
9245  /// Val->Glu: Val->Glu substitution.
9246  UNIMOD_Val__Glu = 100000668,
9247 
9248  /// Val->Met: Val->Met substitution.
9249  UNIMOD_Val__Met = 100000669,
9250 
9251  /// Val->Asp: Val->Asp substitution.
9252  UNIMOD_Val__Asp = 100000670,
9253 
9254  /// Val->Xle: Val->Leu/Ile substitution.
9255  UNIMOD_Val__Xle = 100000671,
9256 
9257  /// Val->Gly: Val->Gly substitution.
9258  UNIMOD_Val__Gly = 100000672,
9259 
9260  /// Trp->Ser: Trp->Ser substitution.
9261  UNIMOD_Trp__Ser = 100000673,
9262 
9263  /// Trp->Cys: Trp->Cys substitution.
9264  UNIMOD_Trp__Cys = 100000674,
9265 
9266  /// Trp->Arg: Trp->Arg substitution.
9267  UNIMOD_Trp__Arg = 100000675,
9268 
9269  /// Trp->Gly: Trp->Gly substitution.
9270  UNIMOD_Trp__Gly = 100000676,
9271 
9272  /// Trp->Xle: Trp->Leu/Ile substitution.
9273  UNIMOD_Trp__Xle = 100000677,
9274 
9275  /// Tyr->Phe: Tyr->Phe substitution.
9276  UNIMOD_Tyr__Phe = 100000678,
9277 
9278  /// Tyr->Ser: Tyr->Ser substitution.
9279  UNIMOD_Tyr__Ser = 100000679,
9280 
9281  /// Tyr->Asn: Tyr->Asn substitution.
9282  UNIMOD_Tyr__Asn = 100000680,
9283 
9284  /// Tyr->His: Tyr->His substitution.
9285  UNIMOD_Tyr__His = 100000681,
9286 
9287  /// Tyr->Asp: Tyr->Asp substitution.
9288  UNIMOD_Tyr__Asp = 100000682,
9289 
9290  /// Tyr->Cys: Tyr->Cys substitution.
9291  UNIMOD_Tyr__Cys = 100000683,
9292 
9293  /// BDMAPP: Mass Defect Tag on lysine e-amino.
9294  UNIMOD_BDMAPP = 100000684,
9295 
9296  /// NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
9297  UNIMOD_NA_LNO2 = 100000685,
9298 
9299  /// NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
9300  UNIMOD_NA_OA_NO2 = 100000686,
9301 
9302  /// ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
9303  UNIMOD_ICPL_2H_4_ = 100000687,
9304 
9305  /// Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
9307 
9308  /// Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
9310 
9311  /// NIC: Nicotinic Acid.
9312  UNIMOD_NIC = 100000697,
9313 
9314  /// dNIC: Deuterated Nicotinic Acid.
9315  UNIMOD_dNIC = 100000698,
9316 
9317  /// HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
9319 
9320  /// 4-ONE: 4-Oxononenal (ONE).
9321  UNIMOD_4_ONE = 100000721,
9322 
9323  /// O-Dimethylphosphate: O-Dimethylphosphorylation.
9325 
9326  /// O-Methylphosphate: O-Methylphosphorylation.
9328 
9329  /// Diethylphosphate: O-Diethylphosphorylation.
9331 
9332  /// Ethylphosphate: O-Ethylphosphorylation.
9334 
9335  /// O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
9337 
9338  /// Methylphosphonate: Methylphosphonylation.
9340 
9341  /// O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
9343 
9344  /// iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
9345  UNIMOD_iTRAQ8plex = 100000730,
9346 
9347  /// iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
9349 
9350  /// Ethanolamine: Carboxyl modification with ethanolamine.
9351  UNIMOD_Ethanolamine = 100000734,
9352 
9353  /// DTT_ST: Dithiothreitol (DTT).
9354  UNIMOD_DTT_ST = 100000735,
9355 
9356  /// DTT_C: Dithiothreitol (DTT) on Cys.
9357  UNIMOD_DTT_C = 100000736,
9358 
9359  /// TMT6plex: Sixplex Tandem Mass Tag®.
9360  UNIMOD_TMT6plex = 100000737,
9361 
9362  /// TMT2plex: Duplex Tandem Mass Tag®.
9363  UNIMOD_TMT2plex = 100000738,
9364 
9365  /// TMT: Native Tandem Mass Tag®.
9366  UNIMOD_TMT = 100000739,
9367 
9368  /// ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
9369  UNIMOD_ExacTagThiol = 100000740,
9370 
9371  /// ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
9372  UNIMOD_ExacTagAmine = 100000741,
9373 
9374  /// 4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
9376 
9377  /// NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
9378  UNIMOD_NO_SMX_SEMD = 100000744,
9379 
9380  /// NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
9381  UNIMOD_NO_SMX_SMCT = 100000745,
9382 
9383  /// NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
9384  UNIMOD_NO_SMX_SIMD = 100000746,
9385 
9386  /// Malonyl: Malonylation of C and S residues.
9387  UNIMOD_Malonyl = 100000747,
9388 
9389  /// 3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
9390  UNIMOD_3sulfo = 100000748,
9391 
9392  /// trifluoro: Trifluoroleucine replacement of leucine.
9393  UNIMOD_trifluoro = 100000750,
9394 
9395  /// TNBS: Tri nitro benzene.
9396  UNIMOD_TNBS = 100000751,
9397 
9398  /// IDEnT: Isotope Distribution Encoded Tag.
9399  UNIMOD_IDEnT = 100000762,
9400 
9401  /// DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines.
9402  UNIMOD_DTT_ST_2H_6_ = 100000763,
9403 
9404  /// DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines.
9405  UNIMOD_DTT_C_2H_6_ = 100000764,
9406 
9407  /// Met-loss: Removal of initiator methionine from protein N-terminus.
9408  UNIMOD_Met_loss = 100000765,
9409 
9410  /// Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.
9412 
9413  /// Menadione-HQ: Menadione hydroquinone derivative.
9414  UNIMOD_Menadione_HQ = 100000767,
9415 
9416  /// Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
9418 
9419  /// lapachenole: Lapachenole photochemically added to cysteine.
9420  UNIMOD_lapachenole = 100000771,
9421 
9422  /// Label:13C(5): 13C(5) Silac label.
9423  UNIMOD_Label_13C_5_ = 100000772,
9424 
9425  /// maleimide: Maleimide.
9426  UNIMOD_maleimide = 100000773,
9427 
9428  /// Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
9430 
9431  /// Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
9433 
9434  /// NEM:2H(5): D5 N-ethylmaleimide on cysteines.
9435  UNIMOD_NEM_2H_5_ = 100000776,
9436 
9437  /// AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
9439 
9440  /// Hex1HexNAc1: Hex1HexNAc1.
9441  UNIMOD_Hex1HexNAc1 = 100000793,
9442 
9443  /// Label:13C(6)+GlyGly: 13C6 labeled ubiquitinylation residue.
9445 
9446  /// Biotin:Thermo-21345: Was PentylamineBiotin.
9448 
9449  /// Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
9450  UNIMOD_Pentylamine = 100000801,
9451 
9452  /// Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
9454 
9455  /// Cy3b-maleimide: Fluorescent dye that labels cysteines.
9457 
9458  /// Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
9460 
9461  /// BMOE: Addition of BMOE crosslinker.
9462  UNIMOD_BMOE = 100000824,
9463 
9464  /// DFDNB: Addition of DFDNB crosslinker.
9465  UNIMOD_DFDNB = 100000825,
9466 
9467  /// TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
9468  UNIMOD_TMPP_Ac = 100000827,
9469 
9470  /// Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
9472 
9473  /// Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
9475 
9476  /// Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
9478 
9479  /// Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
9481 
9482  /// Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
9483  UNIMOD_Arg__Npo = 100000837,
9484 
9485  /// EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
9486  UNIMOD_EQIGG = 100000846,
9487 
9488  /// Arg2PG: Adduct of phenylglyoxal with Arg.
9489  UNIMOD_Arg2PG = 100000848,
9490 
9491  /// cGMP: S-guanylation.
9492  UNIMOD_cGMP = 100000849,
9493 
9494  /// cGMP+RMP-loss: S-guanylation-2.
9496 
9497  /// Label:2H(4)+GlyGly: Ubiquitination 2H4 lysine.
9499 
9500  /// Label:13C(8)15N(2): 13C(8) 15N(2) Silac label.
9502 
9503  /// MG-H1: Methylglyoxal-derived hydroimidazolone.
9504  UNIMOD_MG_H1 = 100000859,
9505 
9506  /// G-H1: Glyoxal-derived hydroimiadazolone.
9507  UNIMOD_G_H1 = 100000860,
9508 
9509  /// ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
9510  UNIMOD_ZGB = 100000861,
9511 
9512  /// Label:13C(1)2H(3): SILAC.
9514 
9515  /// Label:13C(6)15N(2)+GlyGly: 13C(6) 15N(2) Lysine glygly.
9517 
9518  /// ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
9520 
9521  /// QEQTGG: SUMOylation by SUMO-1.
9522  UNIMOD_QEQTGG = 100000876,
9523 
9524  /// QQQTGG: SUMOylation by SUMO-2/3.
9525  UNIMOD_QQQTGG = 100000877,
9526 
9527  /// Bodipy: Bodipy modifications onto cysteine.
9528  UNIMOD_Bodipy = 100000878,
9529 
9530  /// Biotin:Thermo-21325: Was ChromoBiotin.
9532 
9533  /// Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
9535 
9536  /// HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
9538 
9539  /// MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
9540  UNIMOD_MDCC = 100000887,
9541 
9542  /// mTRAQ: MTRAQ light.
9543  UNIMOD_mTRAQ = 100000888,
9544 
9545  /// mTRAQ:13C(3)15N(1): MTRAQ medium.
9547 
9548  /// DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
9550 
9551  /// Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
9553 
9554  /// CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
9556 
9557  /// CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
9559 
9560  /// Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
9562 
9563  /// Met->Aha: Methionine replacement by azido homoalanine.
9564  UNIMOD_Met__Aha = 100000896,
9565 
9566  /// Label:15N(4): SILAC 15N(4).
9567  UNIMOD_Label_15N_4_ = 100000897,
9568 
9569  /// pyrophospho: Pyrophosphorylation of Ser/Thr.
9570  UNIMOD_pyrophospho = 100000898,
9571 
9572  /// Met->Hpg: Methionine replacement by homopropargylglycine.
9573  UNIMOD_Met__Hpg = 100000899,
9574 
9575  /// 4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
9576  UNIMOD_4AcAllylGal = 100000901,
9577 
9578  /// DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
9580 
9581  /// Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
9582  UNIMOD_Lys__CamCys = 100000903,
9583 
9584  /// Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
9585  UNIMOD_Phe__CamCys = 100000904,
9586 
9587  /// Leu->MetOx: Leu->Met substitution and sulfoxidation.
9588  UNIMOD_Leu__MetOx = 100000905,
9589 
9590  /// Lys->MetOx: Lys->Met substitution and sulfoxidation.
9591  UNIMOD_Lys__MetOx = 100000906,
9592 
9593  /// Galactosyl: Galactosyl hydroxylysine.
9594  UNIMOD_Galactosyl = 100000907,
9595 
9596  /// SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.
9598 
9599  /// Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
9601 
9602  /// MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
9603  UNIMOD_MTSL = 100000911,
9604 
9605  /// HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
9606  UNIMOD_HNE_BAHAH = 100000912,
9607 
9608  /// Methylmalonylation: Methylmalonylation on Serine.
9610 
9611  /// Ethoxyformyl: Ethoxyformylation.
9612  UNIMOD_Ethoxyformyl = 100000915,
9613 
9614  /// Label:13C(4)15N(2)+GlyGly: 13C(4) 15N(2) Lysine glygly.
9616 
9617  /// ethylamino: Ethyl amino.
9618  UNIMOD_ethylamino = 100000926,
9619 
9620  /// MercaptoEthanol: 2-OH-ethyl thio-Ser.
9622 
9623  /// Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
9625 
9626  /// VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
9627  UNIMOD_VFQQQTGG = 100000932,
9628 
9629  /// VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
9630  UNIMOD_VIEVYQEQTGG = 100000933,
9631 
9632  /// AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
9633  UNIMOD_AMTzHexNAc2 = 100000934,
9634 
9635  /// Atto495Maleimide: High molecular absorption maleimide label for proteins.
9637 
9638  /// Chlorination: Chlorination of tyrosine residues.
9639  UNIMOD_Chlorination = 100000936,
9640 
9641  /// dichlorination: Dichlorination.
9643 
9644  /// AROD: Cysteine modifier.
9645  UNIMOD_AROD = 100000938,
9646 
9647  /// Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine.
9649 
9650  /// Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.
9652 
9653  /// DNPS: 2,4-Dinitrobenzenesulfenyl.
9654  UNIMOD_DNPS = 100000941,
9655 
9656  /// SulfoGMBS: High molecular absorption label for proteins.
9657  UNIMOD_SulfoGMBS = 100000942,
9658 
9659  /// DimethylamineGMBS: Modified GMBS X linker for proteins.
9661 
9662  /// Label:15N(2)2H(9): SILAC label.
9664 
9665  /// LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
9667 
9668  /// LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
9669  UNIMOD_LG_pyrrole = 100000947,
9670 
9671  /// LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
9673 
9674  /// 3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
9676 
9677  /// Cation:Li: Replacement of proton by lithium.
9678  UNIMOD_Cation_Li = 100000950,
9679 
9680  /// Cation:Ca[II]: Replacement of 2 protons by calcium.
9682 
9683  /// Cation:Fe[II]: Replacement of 2 protons by iron.
9685 
9686  /// Cation:Ni[II]: Replacement of 2 protons by nickel.
9688 
9689  /// Cation:Zn[II]: Replacement of 2 protons by zinc.
9691 
9692  /// Cation:Ag: Replacement of proton by silver.
9693  UNIMOD_Cation_Ag = 100000955,
9694 
9695  /// Cation:Mg[II]: Replacement of 2 protons by magnesium.
9697 
9698  /// 2-succinyl: S-(2-succinyl) cysteine.
9699  UNIMOD_2_succinyl = 100000957,
9700 
9701  /// Propargylamine: Propargylamine.
9703 
9704  /// Phosphopropargyl: Phospho-propargylamine.
9706 
9707  /// SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
9708  UNIMOD_SUMO2135 = 100000960,
9709 
9710  /// SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
9711  UNIMOD_SUMO3549 = 100000961,
9712 
9713  /// thioacylPA: Membrane protein extraction.
9714  UNIMOD_thioacylPA = 100000967,
9715 
9716  /// maleimide3: Maleimide-3-saccharide.
9717  UNIMOD_maleimide3 = 100000971,
9718 
9719  /// maleimide5: Maleimide-5-saccharide.
9720  UNIMOD_maleimide5 = 100000972,
9721 
9722  /// Puromycin: Puromycin.
9723  UNIMOD_Puromycin = 100000973,
9724 
9725  /// Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.
9726  UNIMOD_Chlorpyrifos = 100000975,
9727 
9728  /// Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
9729  UNIMOD_Carbofuran = 100000977,
9730 
9731  /// BITC: Benzyl isothiocyanate.
9732  UNIMOD_BITC = 100000978,
9733 
9734  /// PEITC: Phenethyl isothiocyanate.
9735  UNIMOD_PEITC = 100000979,
9736 
9737  /// glucosone: Condensation product of glucosone.
9738  UNIMOD_glucosone = 100000981,
9739 
9740  /// cysTMT: Native cysteine-reactive Tandem Mass Tag®.
9741  UNIMOD_cysTMT = 100000984,
9742 
9743  /// cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
9744  UNIMOD_cysTMT6plex = 100000985,
9745 
9746  /// Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
9748 
9749  /// Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
9751 
9752  /// Ammonium: Replacement of proton with ammonium ion.
9753  UNIMOD_Ammonium = 100000989,
9754 
9755  /// ISD_z+2_ion: ISD (z+2)-series.
9756  UNIMOD_ISD_z_2_ion = 100000991,
9757 
9758  /// Biotin:Sigma-B1267: Was Biotin-maleimide.
9760 
9761  /// Label:15N(1): 15N(1).
9762  UNIMOD_Label_15N_1_ = 100000994,
9763 
9764  /// Label:15N(2): 15N(2).
9765  UNIMOD_Label_15N_2_ = 100000995,
9766 
9767  /// Label:15N(3): 15N(3).
9768  UNIMOD_Label_15N_3_ = 100000996,
9769 
9770  /// sulfo+amino: Aminotyrosine with sulfation.
9771  UNIMOD_sulfo_amino = 100000997,
9772 
9773  /// BHAc: N-biotinyl-6-aminohexanoyl.
9774  UNIMOD_BHAc = 100000998,
9775 
9776  /// AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
9777  UNIMOD_AHA_Alkyne = 100001000,
9778 
9779  /// AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
9781 
9782  /// EGCG1: (-)-epigallocatechin-3-gallate.
9783  UNIMOD_EGCG1 = 100001002,
9784 
9785  /// EGCG2: (-)-dehydroepigallocatechin.
9786  UNIMOD_EGCG2 = 100001003,
9787 
9788  /// Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
9790 
9791  /// Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
9793 
9794  /// Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
9796 
9797  /// Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
9799 
9800  /// SecCarbamidomethyl: Sec Iodoacetamide derivative.
9802 
9803  /// Thiazolidine: Addition of Carbon to cysteine.
9804  UNIMOD_Thiazolidine = 100001009,
9805 
9806  /// DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
9808 
9809  /// Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
9811 
9812  /// glycidamide: Glycidamide adduct.
9813  UNIMOD_glycidamide = 100001014,
9814 
9815  /// Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
9816  UNIMOD_Ahx2_Hsl = 100001015,
9817 
9818  /// DMPO: DMPO spin-trap nitrone adduct.
9819  UNIMOD_DMPO = 100001017,
9820 
9821  /// ICDID: Isotope-Coded Dimedone light form.
9822  UNIMOD_ICDID = 100001018,
9823 
9824  /// ICDID:2H(6): Isotope-Coded Dimedone heavy form.
9825  UNIMOD_ICDID_2H_6_ = 100001019,
9826 
9827  /// Xlink:DSS: Monolink of DSS/BS3 crosslinker to Lys or N-terminus.
9828  UNIMOD_Xlink_DSS = 100001020,
9829 
9830  /// Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.
9831  UNIMOD_Xlink_EGS = 100001021,
9832 
9833  /// Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.
9834  UNIMOD_Xlink_DST = 100001022,
9835 
9836  /// Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.
9837  UNIMOD_Xlink_DTSSP = 100001023,
9838 
9839  /// Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.
9840  UNIMOD_Xlink_SMCC = 100001024,
9841 
9842  /// Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.
9843  UNIMOD_Xlink_DMP_de = 100001027,
9844 
9845  /// Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.
9847 
9848  /// Biotin:Thermo-88310: Desthiobiotin modification of lysine.
9850 
9851  /// 2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
9853 
9854  /// SecNEM: N-ethylmaleimide on selenocysteines.
9855  UNIMOD_SecNEM = 100001033,
9856 
9857  /// SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
9858  UNIMOD_SecNEM_2H_5_ = 100001034,
9859 
9860  /// Thiadiazole: Thiadiazolydation of Cys.
9861  UNIMOD_Thiadiazole = 100001035,
9862 
9863  /// Withaferin: Modification of cystein by withaferin.
9864  UNIMOD_Withaferin = 100001036,
9865 
9866  /// Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
9868 
9869  /// TAMRA-FP: TAMRA fluorophosphonate modification of serine.
9870  UNIMOD_TAMRA_FP = 100001038,
9871 
9872  /// Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
9874 
9875  /// Deoxyhypusine: Deoxyhypusine.
9877 
9878  /// Acetyldeoxyhypusine: Acetyldeoxyhypusine.
9880 
9881  /// Acetylhypusine: Acetylhypusine.
9883 
9884  /// Ala->Cys: Ala->Cys substitution.
9885  UNIMOD_Ala__Cys = 100001044,
9886 
9887  /// Ala->Phe: Ala->Phe substitution.
9888  UNIMOD_Ala__Phe = 100001045,
9889 
9890  /// Ala->His: Ala->His substitution.
9891  UNIMOD_Ala__His = 100001046,
9892 
9893  /// Ala->Xle: Ala->Leu/Ile substitution.
9894  UNIMOD_Ala__Xle = 100001047,
9895 
9896  /// Ala->Lys: Ala->Lys substitution.
9897  UNIMOD_Ala__Lys = 100001048,
9898 
9899  /// Ala->Met: Ala->Met substitution.
9900  UNIMOD_Ala__Met = 100001049,
9901 
9902  /// Ala->Asn: Ala->Asn substitution.
9903  UNIMOD_Ala__Asn = 100001050,
9904 
9905  /// Ala->Gln: Ala->Gln substitution.
9906  UNIMOD_Ala__Gln = 100001051,
9907 
9908  /// Ala->Arg: Ala->Arg substitution.
9909  UNIMOD_Ala__Arg = 100001052,
9910 
9911  /// Ala->Trp: Ala->Trp substitution.
9912  UNIMOD_Ala__Trp = 100001053,
9913 
9914  /// Ala->Tyr: Ala->Tyr substitution.
9915  UNIMOD_Ala__Tyr = 100001054,
9916 
9917  /// Cys->Ala: Cys->Ala substitution.
9918  UNIMOD_Cys__Ala = 100001055,
9919 
9920  /// Cys->Asp: Cys->Asp substitution.
9921  UNIMOD_Cys__Asp = 100001056,
9922 
9923  /// Cys->Glu: Cys->Glu substitution.
9924  UNIMOD_Cys__Glu = 100001057,
9925 
9926  /// Cys->His: Cys->His substitution.
9927  UNIMOD_Cys__His = 100001058,
9928 
9929  /// Cys->Xle: Cys->Leu/Ile substitution.
9930  UNIMOD_Cys__Xle = 100001059,
9931 
9932  /// Cys->Lys: Cys->Lys substitution.
9933  UNIMOD_Cys__Lys = 100001060,
9934 
9935  /// Cys->Met: Cys->Met substitution.
9936  UNIMOD_Cys__Met = 100001061,
9937 
9938  /// Cys->Asn: Cys->Asn substitution.
9939  UNIMOD_Cys__Asn = 100001062,
9940 
9941  /// Cys->Pro: Cys->Pro substitution.
9942  UNIMOD_Cys__Pro = 100001063,
9943 
9944  /// Cys->Gln: Cys->Gln substitution.
9945  UNIMOD_Cys__Gln = 100001064,
9946 
9947  /// Cys->Thr: Cys->Thr substitution.
9948  UNIMOD_Cys__Thr = 100001065,
9949 
9950  /// Cys->Val: Cys->Val substitution.
9951  UNIMOD_Cys__Val = 100001066,
9952 
9953  /// Asp->Cys: Asp->Cys substitution.
9954  UNIMOD_Asp__Cys = 100001067,
9955 
9956  /// Asp->Phe: Asp->Phe substitution.
9957  UNIMOD_Asp__Phe = 100001068,
9958 
9959  /// Asp->Xle: Asp->Leu/Ile substitution.
9960  UNIMOD_Asp__Xle = 100001069,
9961 
9962  /// Asp->Lys: Asp->Lys substitution.
9963  UNIMOD_Asp__Lys = 100001070,
9964 
9965  /// Asp->Met: Asp->Met substitution.
9966  UNIMOD_Asp__Met = 100001071,
9967 
9968  /// Asp->Pro: Asp->Pro substitution.
9969  UNIMOD_Asp__Pro = 100001072,
9970 
9971  /// Asp->Gln: Asp->Gln substitution.
9972  UNIMOD_Asp__Gln = 100001073,
9973 
9974  /// Asp->Arg: Asp->Arg substitution.
9975  UNIMOD_Asp__Arg = 100001074,
9976 
9977  /// Asp->Ser: Asp->Ser substitution.
9978  UNIMOD_Asp__Ser = 100001075,
9979 
9980  /// Asp->Thr: Asp->Thr substitution.
9981  UNIMOD_Asp__Thr = 100001076,
9982 
9983  /// Asp->Trp: Asp->Trp substitution.
9984  UNIMOD_Asp__Trp = 100001077,
9985 
9986  /// Glu->Cys: Glu->Cys substitution.
9987  UNIMOD_Glu__Cys = 100001078,
9988 
9989  /// Glu->Phe: Glu->Phe substitution.
9990  UNIMOD_Glu__Phe = 100001079,
9991 
9992  /// Glu->His: Glu->His substitution.
9993  UNIMOD_Glu__His = 100001080,
9994 
9995  /// Glu->Xle: Glu->Leu/Ile substitution.
9996  UNIMOD_Glu__Xle = 100001081,
9997 
9998  /// Glu->Met: Glu->Met substitution.
9999  UNIMOD_Glu__Met = 100001082,
10000 
10001  /// Glu->Asn: Glu->Asn substitution.
10002  UNIMOD_Glu__Asn = 100001083,
10003 
10004  /// Glu->Pro: Glu->Pro substitution.
10005  UNIMOD_Glu__Pro = 100001084,
10006 
10007  /// Glu->Arg: Glu->Arg substitution.
10008  UNIMOD_Glu__Arg = 100001085,
10009 
10010  /// Glu->Ser: Glu->Ser substitution.
10011  UNIMOD_Glu__Ser = 100001086,
10012 
10013  /// Glu->Thr: Glu->Thr substitution.
10014  UNIMOD_Glu__Thr = 100001087,
10015 
10016  /// Glu->Trp: Glu->Trp substitution.
10017  UNIMOD_Glu__Trp = 100001088,
10018 
10019  /// Glu->Tyr: Glu->Tyr substitution.
10020  UNIMOD_Glu__Tyr = 100001089,
10021 
10022  /// Phe->Ala: Phe->Ala substitution.
10023  UNIMOD_Phe__Ala = 100001090,
10024 
10025  /// Phe->Asp: Phe->Asp substitution.
10026  UNIMOD_Phe__Asp = 100001091,
10027 
10028  /// Phe->Glu: Phe->Glu substitution.
10029  UNIMOD_Phe__Glu = 100001092,
10030 
10031  /// Phe->Gly: Phe->Gly substitution.
10032  UNIMOD_Phe__Gly = 100001093,
10033 
10034  /// Phe->His: Phe->His substitution.
10035  UNIMOD_Phe__His = 100001094,
10036 
10037  /// Phe->Lys: Phe->Lys substitution.
10038  UNIMOD_Phe__Lys = 100001095,
10039 
10040  /// Phe->Met: Phe->Met substitution.
10041  UNIMOD_Phe__Met = 100001096,
10042 
10043  /// Phe->Asn: Phe->Asn substitution.
10044  UNIMOD_Phe__Asn = 100001097,
10045 
10046  /// Phe->Pro: Phe->Pro substitution.
10047  UNIMOD_Phe__Pro = 100001098,
10048 
10049  /// Phe->Gln: Phe->Gln substitution.
10050  UNIMOD_Phe__Gln = 100001099,
10051 
10052  /// Phe->Arg: Phe->Arg substitution.
10053  UNIMOD_Phe__Arg = 100001100,
10054 
10055  /// Phe->Thr: Phe->Thr substitution.
10056  UNIMOD_Phe__Thr = 100001101,
10057 
10058  /// Phe->Trp: Phe->Trp substitution.
10059  UNIMOD_Phe__Trp = 100001102,
10060 
10061  /// Gly->Phe: Gly->Phe substitution.
10062  UNIMOD_Gly__Phe = 100001103,
10063 
10064  /// Gly->His: Gly->His substitution.
10065  UNIMOD_Gly__His = 100001104,
10066 
10067  /// Gly->Xle: Gly->Leu/Ile substitution.
10068  UNIMOD_Gly__Xle = 100001105,
10069 
10070  /// Gly->Lys: Gly->Lys substitution.
10071  UNIMOD_Gly__Lys = 100001106,
10072 
10073  /// Gly->Met: Gly->Met substitution.
10074  UNIMOD_Gly__Met = 100001107,
10075 
10076  /// Gly->Asn: Gly->Asn substitution.
10077  UNIMOD_Gly__Asn = 100001108,
10078 
10079  /// Gly->Pro: Gly->Pro substitution.
10080  UNIMOD_Gly__Pro = 100001109,
10081 
10082  /// Gly->Gln: Gly->Gln substitution.
10083  UNIMOD_Gly__Gln = 100001110,
10084 
10085  /// Gly->Thr: Gly->Thr substitution.
10086  UNIMOD_Gly__Thr = 100001111,
10087 
10088  /// Gly->Tyr: Gly->Tyr substitution.
10089  UNIMOD_Gly__Tyr = 100001112,
10090 
10091  /// His->Ala: His->Ala substitution.
10092  UNIMOD_His__Ala = 100001113,
10093 
10094  /// His->Cys: His->Cys substitution.
10095  UNIMOD_His__Cys = 100001114,
10096 
10097  /// His->Glu: His->Glu substitution.
10098  UNIMOD_His__Glu = 100001115,
10099 
10100  /// His->Phe: His->Phe substitution.
10101  UNIMOD_His__Phe = 100001116,
10102 
10103  /// His->Gly: His->Gly substitution.
10104  UNIMOD_His__Gly = 100001117,
10105 
10106  /// His->Lys: His->Lys substitution.
10107  UNIMOD_His__Lys = 100001119,
10108 
10109  /// His->Met: His->Met substitution.
10110  UNIMOD_His__Met = 100001120,
10111 
10112  /// His->Ser: His->Ser substitution.
10113  UNIMOD_His__Ser = 100001121,
10114 
10115  /// His->Thr: His->Thr substitution.
10116  UNIMOD_His__Thr = 100001122,
10117 
10118  /// His->Val: His->Val substitution.
10119  UNIMOD_His__Val = 100001123,
10120 
10121  /// His->Trp: His->Trp substitution.
10122  UNIMOD_His__Trp = 100001124,
10123 
10124  /// Xle->Ala: Leu/Ile->Ala substitution.
10125  UNIMOD_Xle__Ala = 100001125,
10126 
10127  /// Xle->Cys: Leu/Ile->Cys substitution.
10128  UNIMOD_Xle__Cys = 100001126,
10129 
10130  /// Xle->Asp: Leu/Ile->Asp substitution.
10131  UNIMOD_Xle__Asp = 100001127,
10132 
10133  /// Xle->Glu: Leu/Ile->Glu substitution.
10134  UNIMOD_Xle__Glu = 100001128,
10135 
10136  /// Xle->Gly: Leu/Ile->Gly substitution.
10137  UNIMOD_Xle__Gly = 100001129,
10138 
10139  /// Xle->Tyr: Leu/Ile->Tyr substitution.
10140  UNIMOD_Xle__Tyr = 100001130,
10141 
10142  /// Lys->Ala: Lys->Ala substitution.
10143  UNIMOD_Lys__Ala = 100001131,
10144 
10145  /// Lys->Cys: Lys->Cys substitution.
10146  UNIMOD_Lys__Cys = 100001132,
10147 
10148  /// Lys->Asp: Lys->Asp substitution.
10149  UNIMOD_Lys__Asp = 100001133,
10150 
10151  /// Lys->Phe: Lys->Phe substitution.
10152  UNIMOD_Lys__Phe = 100001134,
10153 
10154  /// Lys->Gly: Lys->Gly substitution.
10155  UNIMOD_Lys__Gly = 100001135,
10156 
10157  /// Lys->His: Lys->His substitution.
10158  UNIMOD_Lys__His = 100001136,
10159 
10160  /// Lys->Pro: Lys->Pro substitution.
10161  UNIMOD_Lys__Pro = 100001137,
10162 
10163  /// Lys->Ser: Lys->Ser substitution.
10164  UNIMOD_Lys__Ser = 100001138,
10165 
10166  /// Lys->Val: Lys->Val substitution.
10167  UNIMOD_Lys__Val = 100001139,
10168 
10169  /// Lys->Trp: Lys->Trp substitution.
10170  UNIMOD_Lys__Trp = 100001140,
10171 
10172  /// Lys->Tyr: Lys->Tyr substitution.
10173  UNIMOD_Lys__Tyr = 100001141,
10174 
10175  /// Met->Ala: Met->Ala substitution.
10176  UNIMOD_Met__Ala = 100001142,
10177 
10178  /// Met->Cys: Met->Cys substitution.
10179  UNIMOD_Met__Cys = 100001143,
10180 
10181  /// Met->Asp: Met->Asp substitution.
10182  UNIMOD_Met__Asp = 100001144,
10183 
10184  /// Met->Glu: Met->Glu substitution.
10185  UNIMOD_Met__Glu = 100001145,
10186 
10187  /// Met->Phe: Met->Phe substitution.
10188  UNIMOD_Met__Phe = 100001146,
10189 
10190  /// Met->Gly: Met->Gly substitution.
10191  UNIMOD_Met__Gly = 100001147,
10192 
10193  /// Met->His: Met->His substitution.
10194  UNIMOD_Met__His = 100001148,
10195 
10196  /// Met->Asn: Met->Asn substitution.
10197  UNIMOD_Met__Asn = 100001149,
10198 
10199  /// Met->Pro: Met->Pro substitution.
10200  UNIMOD_Met__Pro = 100001150,
10201 
10202  /// Met->Gln: Met->Gln substitution.
10203  UNIMOD_Met__Gln = 100001151,
10204 
10205  /// Met->Ser: Met->Ser substitution.
10206  UNIMOD_Met__Ser = 100001152,
10207 
10208  /// Met->Trp: Met->Trp substitution.
10209  UNIMOD_Met__Trp = 100001153,
10210 
10211  /// Met->Tyr: Met->Tyr substitution.
10212  UNIMOD_Met__Tyr = 100001154,
10213 
10214  /// Asn->Ala: Asn->Ala substitution.
10215  UNIMOD_Asn__Ala = 100001155,
10216 
10217  /// Asn->Cys: Asn->Cys substitution.
10218  UNIMOD_Asn__Cys = 100001156,
10219 
10220  /// Asn->Glu: Asn->Glu substitution.
10221  UNIMOD_Asn__Glu = 100001157,
10222 
10223  /// Asn->Phe: Asn->Phe substitution.
10224  UNIMOD_Asn__Phe = 100001158,
10225 
10226  /// Asn->Gly: Asn->Gly substitution.
10227  UNIMOD_Asn__Gly = 100001159,
10228 
10229  /// Asn->Met: Asn->Met substitution.
10230  UNIMOD_Asn__Met = 100001160,
10231 
10232  /// Asn->Pro: Asn->Pro substitution.
10233  UNIMOD_Asn__Pro = 100001161,
10234 
10235  /// Asn->Gln: Asn->Gln substitution.
10236  UNIMOD_Asn__Gln = 100001162,
10237 
10238  /// Asn->Arg: Asn->Arg substitution.
10239  UNIMOD_Asn__Arg = 100001163,
10240 
10241  /// Asn->Val: Asn->Val substitution.
10242  UNIMOD_Asn__Val = 100001164,
10243 
10244  /// Asn->Trp: Asn->Trp substitution.
10245  UNIMOD_Asn__Trp = 100001165,
10246 
10247  /// Pro->Cys: Pro->Cys substitution.
10248  UNIMOD_Pro__Cys = 100001166,
10249 
10250  /// Pro->Asp: Pro->Asp substitution.
10251  UNIMOD_Pro__Asp = 100001167,
10252 
10253  /// Pro->Glu: Pro->Glu substitution.
10254  UNIMOD_Pro__Glu = 100001168,
10255 
10256  /// Pro->Phe: Pro->Phe substitution.
10257  UNIMOD_Pro__Phe = 100001169,
10258 
10259  /// Pro->Gly: Pro->Gly substitution.
10260  UNIMOD_Pro__Gly = 100001170,
10261 
10262  /// Pro->Lys: Pro->Lys substitution.
10263  UNIMOD_Pro__Lys = 100001171,
10264 
10265  /// Pro->Met: Pro->Met substitution.
10266  UNIMOD_Pro__Met = 100001172,
10267 
10268  /// Pro->Asn: Pro->Asn substitution.
10269  UNIMOD_Pro__Asn = 100001173,
10270 
10271  /// Pro->Val: Pro->Val substitution.
10272  UNIMOD_Pro__Val = 100001174,
10273 
10274  /// Pro->Trp: Pro->Trp substitution.
10275  UNIMOD_Pro__Trp = 100001175,
10276 
10277  /// Pro->Tyr: Pro->Tyr substitution.
10278  UNIMOD_Pro__Tyr = 100001176,
10279 
10280  /// Gln->Ala: Gln->Ala substitution.
10281  UNIMOD_Gln__Ala = 100001177,
10282 
10283  /// Gln->Cys: Gln->Cys substitution.
10284  UNIMOD_Gln__Cys = 100001178,
10285 
10286  /// Gln->Asp: Gln->Asp substitution.
10287  UNIMOD_Gln__Asp = 100001179,
10288 
10289  /// Gln->Phe: Gln->Phe substitution.
10290  UNIMOD_Gln__Phe = 100001180,
10291 
10292  /// Gln->Gly: Gln->Gly substitution.
10293  UNIMOD_Gln__Gly = 100001181,
10294 
10295  /// Gln->Met: Gln->Met substitution.
10296  UNIMOD_Gln__Met = 100001182,
10297 
10298  /// Gln->Asn: Gln->Asn substitution.
10299  UNIMOD_Gln__Asn = 100001183,
10300 
10301  /// Gln->Ser: Gln->Ser substitution.
10302  UNIMOD_Gln__Ser = 100001184,
10303 
10304  /// Gln->Thr: Gln->Thr substitution.
10305  UNIMOD_Gln__Thr = 100001185,
10306 
10307  /// Gln->Val: Gln->Val substitution.
10308  UNIMOD_Gln__Val = 100001186,
10309 
10310  /// Gln->Trp: Gln->Trp substitution.
10311  UNIMOD_Gln__Trp = 100001187,
10312 
10313  /// Gln->Tyr: Gln->Tyr substitution.
10314  UNIMOD_Gln__Tyr = 100001188,
10315 
10316  /// Arg->Ala: Arg->Ala substitution.
10317  UNIMOD_Arg__Ala = 100001189,
10318 
10319  /// Arg->Asp: Arg->Asp substitution.
10320  UNIMOD_Arg__Asp = 100001190,
10321 
10322  /// Arg->Glu: Arg->Glu substitution.
10323  UNIMOD_Arg__Glu = 100001191,
10324 
10325  /// Arg->Asn: Arg->Asn substitution.
10326  UNIMOD_Arg__Asn = 100001192,
10327 
10328  /// Arg->Val: Arg->Val substitution.
10329  UNIMOD_Arg__Val = 100001193,
10330 
10331  /// Arg->Tyr: Arg->Tyr substitution.
10332  UNIMOD_Arg__Tyr = 100001194,
10333 
10334  /// Arg->Phe: Arg->Phe substitution.
10335  UNIMOD_Arg__Phe = 100001195,
10336 
10337  /// Ser->Asp: Ser->Asp substitution.
10338  UNIMOD_Ser__Asp = 100001196,
10339 
10340  /// Ser->Glu: Ser->Glu substitution.
10341  UNIMOD_Ser__Glu = 100001197,
10342 
10343  /// Ser->His: Ser->His substitution.
10344  UNIMOD_Ser__His = 100001198,
10345 
10346  /// Ser->Lys: Ser->Lys substitution.
10347  UNIMOD_Ser__Lys = 100001199,
10348 
10349  /// Ser->Met: Ser->Met substitution.
10350  UNIMOD_Ser__Met = 100001200,
10351 
10352  /// Ser->Gln: Ser->Gln substitution.
10353  UNIMOD_Ser__Gln = 100001201,
10354 
10355  /// Ser->Val: Ser->Val substitution.
10356  UNIMOD_Ser__Val = 100001202,
10357 
10358  /// Thr->Cys: Thr->Cys substitution.
10359  UNIMOD_Thr__Cys = 100001203,
10360 
10361  /// Thr->Asp: Thr->Asp substitution.
10362  UNIMOD_Thr__Asp = 100001204,
10363 
10364  /// Thr->Glu: Thr->Glu substitution.
10365  UNIMOD_Thr__Glu = 100001205,
10366 
10367  /// Thr->Phe: Thr->Phe substitution.
10368  UNIMOD_Thr__Phe = 100001206,
10369 
10370  /// Thr->Gly: Thr->Gly substitution.
10371  UNIMOD_Thr__Gly = 100001207,
10372 
10373  /// Thr->His: Thr->His substitution.
10374  UNIMOD_Thr__His = 100001208,
10375 
10376  /// Thr->Gln: Thr->Gln substitution.
10377  UNIMOD_Thr__Gln = 100001209,
10378 
10379  /// Thr->Val: Thr->Val substitution.
10380  UNIMOD_Thr__Val = 100001210,
10381 
10382  /// Thr->Trp: Thr->Trp substitution.
10383  UNIMOD_Thr__Trp = 100001211,
10384 
10385  /// Thr->Tyr: Thr->Tyr substitution.
10386  UNIMOD_Thr__Tyr = 100001212,
10387 
10388  /// Val->Cys: Val->Cys substitution.
10389  UNIMOD_Val__Cys = 100001213,
10390 
10391  /// Val->His: Val->His substitution.
10392  UNIMOD_Val__His = 100001214,
10393 
10394  /// Val->Lys: Val->Lys substitution.
10395  UNIMOD_Val__Lys = 100001215,
10396 
10397  /// Val->Asn: Val->Asn substitution.
10398  UNIMOD_Val__Asn = 100001216,
10399 
10400  /// Val->Pro: Val->Pro substitution.
10401  UNIMOD_Val__Pro = 100001217,
10402 
10403  /// Val->Gln: Val->Gln substitution.
10404  UNIMOD_Val__Gln = 100001218,
10405 
10406  /// Val->Arg: Val->Arg substitution.
10407  UNIMOD_Val__Arg = 100001219,
10408 
10409  /// Val->Ser: Val->Ser substitution.
10410  UNIMOD_Val__Ser = 100001220,
10411 
10412  /// Val->Thr: Val->Thr substitution.
10413  UNIMOD_Val__Thr = 100001221,
10414 
10415  /// Val->Trp: Val->Trp substitution.
10416  UNIMOD_Val__Trp = 100001222,
10417 
10418  /// Val->Tyr: Val->Tyr substitution.
10419  UNIMOD_Val__Tyr = 100001223,
10420 
10421  /// Trp->Ala: Trp->Ala substitution.
10422  UNIMOD_Trp__Ala = 100001224,
10423 
10424  /// Trp->Asp: Trp->Asp substitution.
10425  UNIMOD_Trp__Asp = 100001225,
10426 
10427  /// Trp->Glu: Trp->Glu substitution.
10428  UNIMOD_Trp__Glu = 100001226,
10429 
10430  /// Trp->Phe: Trp->Phe substitution.
10431  UNIMOD_Trp__Phe = 100001227,
10432 
10433  /// Trp->His: Trp->His substitution.
10434  UNIMOD_Trp__His = 100001228,
10435 
10436  /// Trp->Lys: Trp->Lys substitution.
10437  UNIMOD_Trp__Lys = 100001229,
10438 
10439  /// Trp->Met: Trp->Met substitution.
10440  UNIMOD_Trp__Met = 100001230,
10441 
10442  /// Trp->Asn: Trp->Asn substitution.
10443  UNIMOD_Trp__Asn = 100001231,
10444 
10445  /// Trp->Pro: Trp->Pro substitution.
10446  UNIMOD_Trp__Pro = 100001232,
10447 
10448  /// Trp->Gln: Trp->Gln substitution.
10449  UNIMOD_Trp__Gln = 100001233,
10450 
10451  /// Trp->Thr: Trp->Thr substitution.
10452  UNIMOD_Trp__Thr = 100001234,
10453 
10454  /// Trp->Val: Trp->Val substitution.
10455  UNIMOD_Trp__Val = 100001235,
10456 
10457  /// Trp->Tyr: Trp->Tyr substitution.
10458  UNIMOD_Trp__Tyr = 100001236,
10459 
10460  /// Tyr->Ala: Tyr->Ala substitution.
10461  UNIMOD_Tyr__Ala = 100001237,
10462 
10463  /// Tyr->Glu: Tyr->Glu substitution.
10464  UNIMOD_Tyr__Glu = 100001238,
10465 
10466  /// Tyr->Gly: Tyr->Gly substitution.
10467  UNIMOD_Tyr__Gly = 100001239,
10468 
10469  /// Tyr->Lys: Tyr->Lys substitution.
10470  UNIMOD_Tyr__Lys = 100001240,
10471 
10472  /// Tyr->Met: Tyr->Met substitution.
10473  UNIMOD_Tyr__Met = 100001241,
10474 
10475  /// Tyr->Pro: Tyr->Pro substitution.
10476  UNIMOD_Tyr__Pro = 100001242,
10477 
10478  /// Tyr->Gln: Tyr->Gln substitution.
10479  UNIMOD_Tyr__Gln = 100001243,
10480 
10481  /// Tyr->Arg: Tyr->Arg substitution.
10482  UNIMOD_Tyr__Arg = 100001244,
10483 
10484  /// Tyr->Thr: Tyr->Thr substitution.
10485  UNIMOD_Tyr__Thr = 100001245,
10486 
10487  /// Tyr->Val: Tyr->Val substitution.
10488  UNIMOD_Tyr__Val = 100001246,
10489 
10490  /// Tyr->Trp: Tyr->Trp substitution.
10491  UNIMOD_Tyr__Trp = 100001247,
10492 
10493  /// Tyr->Xle: Tyr->Leu/Ile substitution.
10494  UNIMOD_Tyr__Xle = 100001248,
10495 
10496  /// AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
10497  UNIMOD_AHA_SS = 100001249,
10498 
10499  /// AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
10500  UNIMOD_AHA_SS_CAM = 100001250,
10501 
10502  /// Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
10504 
10505  /// Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
10507 
10508  /// 2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
10510 
10511  /// Saligenin: O-toluene.
10512  UNIMOD_Saligenin = 100001254,
10513 
10514  /// Cresylphosphate: O-toluyl-phosphorylation.
10516 
10517  /// CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
10519 
10520  /// Ub-Br2: Ub Bromide probe addition.
10521  UNIMOD_Ub_Br2 = 100001257,
10522 
10523  /// Ub-VME: Ubiquitin vinylmethylester.
10524  UNIMOD_Ub_VME = 100001258,
10525 
10526  /// Ub-amide: Ub amide probe addition.
10527  UNIMOD_Ub_amide = 100001260,
10528 
10529  /// Ub-fluorescein: Ub Fluorescein probe addition.
10531 
10532  /// 2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
10534 
10535  /// Gly: Addition of Glycine.
10536  UNIMOD_Gly = 100001263,
10537 
10538  /// pupylation: Addition of GGE.
10539  UNIMOD_pupylation = 100001264,
10540 
10541  /// Label:13C(4): 13C4 Methionine label.
10542  UNIMOD_Label_13C_4_ = 100001266,
10543 
10544  /// Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
10546 
10547  /// HCysThiolactone: N-Homocysteine thiolactone.
10549 
10550  /// HCysteinyl: S-homocysteinylation.
10551  UNIMOD_HCysteinyl = 100001271,
10552 
10553  /// UgiJoullie: Side reaction of HisTag.
10554  UNIMOD_UgiJoullie = 100001276,
10555 
10556  /// Dipyridyl: Cys modified with dipy ligand.
10557  UNIMOD_Dipyridyl = 100001277,
10558 
10559  /// Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
10560  UNIMOD_Furan = 100001278,
10561 
10562  /// Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
10563  UNIMOD_Difuran = 100001279,
10564 
10565  /// BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
10567 
10568  /// UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
10570 
10571  /// UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
10573 
10574  /// IMEHex(2)NeuAc: Glycosylation with IME linked Hex(2) NeuAc.
10576 
10577  /// Arg-loss: Loss of arginine due to transpeptidation.
10578  UNIMOD_Arg_loss = 100001287,
10579 
10580  /// Arg: Addition of arginine due to transpeptidation.
10581  UNIMOD_Arg = 100001288,
10582 
10583  /// Butyryl: Butyryl.
10584  UNIMOD_Butyryl = 100001289,
10585 
10586  /// Dicarbamidomethyl: Double Carbamidomethylation.
10588 
10589  /// Dimethyl:2H(6): Dimethyl-Medium.
10591 
10592  /// GGQ: SUMOylation leaving GlyGlyGln.
10593  UNIMOD_GGQ = 100001292,
10594 
10595  /// QTGG: SUMOylation leaving GlnThrGlyGly.
10596  UNIMOD_QTGG = 100001293,
10597 
10598  /// Label:13C(3): 13C3 label for SILAC.
10599  UNIMOD_Label_13C_3_ = 100001296,
10600 
10601  /// Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
10603 
10604  /// Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
10606 
10607  /// Label:2H(10): 2H(10) label.
10608  UNIMOD_Label_2H_10_ = 100001299,
10609 
10610  /// Label:2H(4)13C(1): Label:2H(4)13C(1).
10612 
10613  /// Lys: Addition of lysine due to transpeptidation.
10614  UNIMOD_Lys = 100001301,
10615 
10616  /// mTRAQ:13C(6)15N(2): MTRAQ heavy.
10618 
10619  /// NeuAc: N-acetyl neuraminic acid.
10620  UNIMOD_NeuAc = 100001303,
10621 
10622  /// NeuGc: N-glycoyl neuraminic acid.
10623  UNIMOD_NeuGc = 100001304,
10624 
10625  /// Propyl: Propyl.
10626  UNIMOD_Propyl = 100001305,
10627 
10628  /// Propyl:2H(6): Propyl:2H(6).
10629  UNIMOD_Propyl_2H_6_ = 100001306,
10630 
10631  /// Propiophenone: Propiophenone.
10633 
10634  /// Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
10636 
10637  /// Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
10639 
10640  /// biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
10642 
10643  /// MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
10645 
10646  /// EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
10648 
10649  /// Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
10651 
10652  /// DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
10654 
10655  /// DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
10656  UNIMOD_DiLeu4plex = 100001322,
10657 
10658  /// DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
10660 
10661  /// DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
10663 
10664  /// NEMsulfur: N-ethylmaleimideSulfur.
10665  UNIMOD_NEMsulfur = 100001326,
10666 
10667  /// SulfurDioxide: SulfurDioxide.
10669 
10670  /// NEMsulfurWater: N-ethylmaleimideSulfurWater.
10672 
10673  /// bisANS-sulfonates: BisANS with loss of both sulfonates.
10675 
10676  /// DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
10677  UNIMOD_DNCB_hapten = 100001331,
10678 
10679  /// Biotin:Thermo-21911: Biotin-PEG11-maleimide.
10681 
10682  /// iodoTMT: Native iodoacetyl Tandem Mass Tag®.
10683  UNIMOD_iodoTMT = 100001341,
10684 
10685  /// iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
10686  UNIMOD_iodoTMT6plex = 100001342,
10687 
10688  /// Gluconoylation: Gluconoylation.
10690 
10691  /// Phosphogluconoylation: Phosphogluconoylation.
10693 
10694  /// PS_Hapten: Reaction with phenyl salicylate (PS).
10695  UNIMOD_PS_Hapten = 100001345,
10696 
10697  /// Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
10699 
10700  /// benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group.
10702 
10703  /// CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
10705 
10706  /// azole: Formation of five membered aromatic heterocycle.
10707  UNIMOD_azole = 100001355,
10708 
10709  /// phosphoRibosyl: Phosphate-ribosylation.
10711 
10712  /// NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
10714 
10715  /// Crotonyl: Crotonylation.
10716  UNIMOD_Crotonyl = 100001363,
10717 
10718  /// O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
10720 
10721  /// N-dimethylphosphate: N-dimethylphosphate.
10723 
10724  /// dHex(1)Hex(1): Hex1dHex1.
10726 
10727  /// Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
10729 
10730  /// Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
10732 
10733  /// Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
10735 
10736  /// Acetyl:13C(2): Heavy acetylation.
10738 
10739  /// dHex(1)Hex(2): Hex2dHex1.
10741 
10742  /// dHex(1)Hex(3): Hex3dHex1.
10744 
10745  /// dHex(1)Hex(4): Hex4dHex1.
10747 
10748  /// dHex(1)Hex(5): Hex5dHex1.
10750 
10751  /// dHex(1)Hex(6): Hex6dHex1.
10753 
10754  /// methylsulfonylethyl: Reaction with methyl vinyl sulfone.
10756 
10757  /// ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
10759 
10760  /// phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
10762 
10763  /// PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage.
10765 
10766  /// Homocysteic_acid: Methionine oxidation to homocysteic acid.
10768 
10769  /// Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
10771 
10772  /// 3-phosphoglyceryl: 3-phosphoglyceryl.
10774 
10775  /// HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
10776  UNIMOD_HN2_mustard = 100001388,
10777 
10778  /// HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
10779  UNIMOD_HN3_mustard = 100001389,
10780 
10781  /// Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
10783 
10784  /// NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
10786 
10787  /// DiART6plex: Representative mass and accurate mass for 114.
10788  UNIMOD_DiART6plex = 100001392,
10789 
10790  /// DiART6plex115: Accurate mass for DiART6plex 115.
10792 
10793  /// DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
10795 
10796  /// DiART6plex117: Accurate mass for DiART6plex 117.
10798 
10799  /// DiART6plex118: Accurate mass for DiART6plex 118.
10801 
10802  /// Iodoacetanilide: Iodoacetanilide derivative.
10804 
10805  /// Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
10807 
10808  /// Dap-DSP: Diaminopimelic acid-DSP monolinked.
10809  UNIMOD_Dap_DSP = 100001399,
10810 
10811  /// MurNAc: N-Acetylmuramic acid.
10812  UNIMOD_MurNAc = 100001400,
10813 
10814  /// TransN-biotin: Transaminated Protein N-terminus biotinylated with biotin-hydrazide.
10816 
10817  /// Label:2H(7)15N(4): Label:2H(7)15N(4).
10819 
10820  /// Label:2H(6)15N(1): Label:2H(6)15N(1).
10822 
10823  /// unit: A unit of measurement is a standardized quantity of a physical quality.
10824  UO_unit = 200000000,
10825 
10826  /// length unit: A unit which is a standard measure of the distance between two points.
10827  UO_length_unit = 200000001,
10828 
10829  /// mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
10830  UO_mass_unit = 200000002,
10831 
10832  /// time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
10833  UO_time_unit = 200000003,
10834 
10835  /// electric current unit: A unit which is a standard measure of the flow of electric charge.
10837 
10838  /// temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
10839  UO_temperature_unit = 200000005,
10840 
10841  /// substance unit: A unit which is a standardised quantity of an element or compound with uniform composition.
10842  UO_substance_unit = 200000006,
10843 
10844  /// luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.
10846 
10847  /// meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
10848  UO_meter = 200000008,
10849 
10850  /// kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
10851  UO_kilogram = 200000009,
10852 
10853  /// second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
10854  UO_second = 200000010,
10855 
10856  /// ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.
10857  UO_ampere = 200000011,
10858 
10859  /// kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.
10860  UO_kelvin = 200000012,
10861 
10862  /// mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.
10863  UO_mole = 200000013,
10864 
10865  /// candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.
10866  UO_candela = 200000014,
10867 
10868  /// centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
10869  UO_centimeter = 200000015,
10870 
10871  /// millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
10872  UO_millimeter = 200000016,
10873 
10874  /// micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
10875  UO_micrometer = 200000017,
10876 
10877  /// nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
10878  UO_nanometer = 200000018,
10879 
10880  /// angstrom: A length unit which is equal to 10 [-10] m.
10881  UO_angstrom = 200000019,
10882 
10883  /// picometer: A length unit which is equal to 10^[-12] m.
10884  UO_picometer = 200000020,
10885 
10886  /// gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
10887  UO_gram = 200000021,
10888 
10889  /// milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
10890  UO_milligram = 200000022,
10891 
10892  /// microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
10893  UO_microgram = 200000023,
10894 
10895  /// nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
10896  UO_nanogram = 200000024,
10897 
10898  /// picogram: A mass unit which is equal to 10^[-12] g.
10899  UO_picogram = 200000025,
10900 
10901  /// femtogram: A mass unit which is equal to 10^[-15] g.
10902  UO_femtogram = 200000026,
10903 
10904  /// degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K.
10905  UO_degree_celsius = 200000027,
10906 
10907  /// millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
10908  UO_millisecond = 200000028,
10909 
10910  /// microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
10911  UO_microsecond = 200000029,
10912 
10913  /// picosecond: A time unit which is equal to 10^[-12] s.
10914  UO_picosecond = 200000030,
10915 
10916  /// minute: A time unit which is equal to 60 seconds.
10917  UO_minute = 200000031,
10918 
10919  /// hour: A time unit which is equal to 3600 seconds or 60 minutes.
10920  UO_hour = 200000032,
10921 
10922  /// day: A time unit which is equal to 24 hours.
10923  UO_day = 200000033,
10924 
10925  /// week: A time unit which is equal to 7 days.
10926  UO_week = 200000034,
10927 
10928  /// month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
10929  UO_month = 200000035,
10930 
10931  /// year: A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.
10932  UO_year = 200000036,
10933 
10934  /// milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A.
10935  UO_milliampere = 200000037,
10936 
10937  /// microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A.
10938  UO_microampere = 200000038,
10939 
10940  /// micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
10941  UO_micromole = 200000039,
10942 
10943  /// millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
10944  UO_millimole = 200000040,
10945 
10946  /// nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
10947  UO_nanomole = 200000041,
10948 
10949  /// picomole: A substance unit equal to 10^[-12] mol.
10950  UO_picomole = 200000042,
10951 
10952  /// femtomole: A substance unit equal to 10^[-15] mol.
10953  UO_femtomole = 200000043,
10954 
10955  /// attomole: A substance unit equal to 10^[-18] mol.
10956  UO_attomole = 200000044,
10957 
10958  /// base unit: A unit which is one of a particular measure to which all measures of that type can be related.
10959  UO_base_unit = 200000045,
10960 
10961  /// derived unit: A unit which is derived from base units.
10963 
10964  /// area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
10965  UO_area_unit = 200000047,
10966 
10967  /// acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction.
10969 
10970  /// angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time.
10972 
10973  /// angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity.
10975 
10976  /// concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
10978 
10979  /// mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume.
10981 
10982  /// luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area.
10983  UO_luminance_unit = 200000053,
10984 
10985  /// area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area.
10987 
10988  /// molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
10989  UO_molar_mass_unit = 200000055,
10990 
10991  /// molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
10993 
10994  /// momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity.
10995  UO_momentum_unit = 200000057,
10996 
10997  /// rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time.
10999 
11000  /// specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density).
11002 
11003  /// speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity.
11005 
11006  /// unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.
11007  UO_unit_of_molarity = 200000061,
11008 
11009  /// molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
11010  UO_molar = 200000062,
11011 
11012  /// millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
11013  UO_millimolar = 200000063,
11014 
11015  /// micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
11016  UO_micromolar = 200000064,
11017 
11018  /// nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.
11019  UO_nanomolar = 200000065,
11020 
11021  /// picomolar: A unit of molarity which is equal to 10^[-12] M.
11022  UO_picomolar = 200000066,
11023 
11024  /// unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent.
11025  UO_unit_of_molality = 200000067,
11026 
11027  /// molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg).
11028  UO_molal = 200000068,
11029 
11030  /// millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
11031  UO_millimolal = 200000069,
11032 
11033  /// micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
11034  UO_micromolal = 200000070,
11035 
11036  /// nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
11037  UO_nanomolal = 200000071,
11038 
11039  /// picomolal: A molality unit which is equal to 10^[-12] m.
11040  UO_picomolal = 200000072,
11041 
11042  /// femtomolar: A unit of molarity which is equal to 10^[-15] M.
11043  UO_femtomolar = 200000073,
11044 
11045  /// unit of normality: A unit of concentration which highlights the chemical nature of salts.
11047 
11048  /// normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule.
11049  UO_normal = 200000075,
11050 
11051  /// mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution.
11052  UO_mole_fraction = 200000076,
11053 
11054  /// meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second.
11056 
11057  /// radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second.
11059 
11060  /// radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute).
11062 
11063  /// square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long.
11064  UO_square_meter = 200000080,
11065 
11066  /// square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2].
11068 
11069  /// square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
11071 
11072  /// kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters.
11074 
11075  /// gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters.
11077 
11078  /// candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter.
11080 
11081  /// kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared.
11083 
11084  /// kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound.
11086 
11087  /// gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound.
11088  UO_gram_per_mole = 200000088,
11089 
11090  /// cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas.
11092 
11093  /// cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas.
11095 
11096  /// kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second.
11098 
11099  /// turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second.
11100  UO_turns_per_second = 200000092,
11101 
11102  /// cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance.
11104 
11105  /// meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second.
11106  UO_meter_per_second = 200000094,
11107 
11108  /// volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
11109  UO_volume_unit = 200000095,
11110 
11111  /// cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters.
11112  UO_cubic_meter = 200000096,
11113 
11114  /// cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
11115  UO_cubic_centimeter = 200000097,
11116 
11117  /// milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
11118  UO_milliliter = 200000098,
11119 
11120  /// liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
11121  UO_liter = 200000099,
11122 
11123  /// cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.
11124  UO_cubic_decimeter = 200000100,
11125 
11126  /// microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
11127  UO_microliter = 200000101,
11128 
11129  /// nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
11130  UO_nanoliter = 200000102,
11131 
11132  /// picoliter: A volume unit which is equal to 10^[-12] L.
11133  UO_picoliter = 200000103,
11134 
11135  /// femtoliter: A volume unit which is equal to 10^[-15] L.
11136  UO_femtoliter = 200000104,
11137 
11138  /// frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time.
11139  UO_frequency_unit = 200000105,
11140 
11141  /// hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
11142  UO_hertz = 200000106,
11143 
11144  /// force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
11145  UO_force_unit = 200000107,
11146 
11147  /// newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force.
11148  UO_newton = 200000108,
11149 
11150  /// pressure unit: A unit which is a standard measure of the force applied to a given area.
11151  UO_pressure_unit = 200000109,
11152 
11153  /// pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2].
11154  UO_pascal = 200000110,
11155 
11156  /// energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc).
11157  UO_energy_unit = 200000111,
11158 
11159  /// joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force.
11160  UO_joule = 200000112,
11161 
11162  /// power unit: A unit which is a standard measure power or the rate of doing work.
11163  UO_power_unit = 200000113,
11164 
11165  /// watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second.
11166  UO_watt = 200000114,
11167 
11168  /// illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
11169  UO_illuminance_unit = 200000115,
11170 
11171  /// lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2].
11172  UO_lux = 200000116,
11173 
11174  /// luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
11176 
11177  /// lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela.
11178  UO_lumen = 200000118,
11179 
11180  /// catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst.
11182 
11183  /// katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second.
11184  UO_katal = 200000120,
11185 
11186  /// angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes.
11187  UO_angle_unit = 200000121,
11188 
11189  /// plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane.
11190  UO_plane_angle_unit = 200000122,
11191 
11192  /// radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds.
11193  UO_radian = 200000123,
11194 
11195  /// solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point.
11196  UO_solid_angle_unit = 200000124,
11197 
11198  /// steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared.
11199  UO_steradian = 200000125,
11200 
11201  /// radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source.
11202  UO_radiation_unit = 200000127,
11203 
11204  /// activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance.
11206 
11207  /// absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue.
11209 
11210  /// dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect.
11212 
11213  /// exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured.
11214  UO_exposure_unit = 200000131,
11215 
11216  /// becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps).
11217  UO_becquerel = 200000132,
11218 
11219  /// curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps).
11220  UO_curie = 200000133,
11221 
11222  /// gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
11223  UO_gray = 200000134,
11224 
11225  /// rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
11226  UO_rad = 200000135,
11227 
11228  /// roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs.
11229  UO_roentgen = 200000136,
11230 
11231  /// sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
11232  UO_sievert = 200000137,
11233 
11234  /// millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
11235  UO_millisievert = 200000138,
11236 
11237  /// microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
11238  UO_microsievert = 200000139,
11239 
11240  /// Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem.
11242 
11243  /// microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
11244  UO_microgray = 200000141,
11245 
11246  /// milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
11247  UO_milligray = 200000142,
11248 
11249  /// nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy.
11250  UO_nanogray = 200000143,
11251 
11252  /// nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv.
11253  UO_nanosievert = 200000144,
11254 
11255  /// millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci.
11256  UO_millicurie = 200000145,
11257 
11258  /// microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci.
11259  UO_microcurie = 200000146,
11260 
11261  /// disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute.
11263 
11264  /// counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute.
11266 
11267  /// nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
11268  UO_nanosecond = 200000150,
11269 
11270  /// century: A time unit which is equal to 100 years.
11271  UO_century = 200000151,
11272 
11273  /// half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration.
11274  UO_half_life = 200000152,
11275 
11276  /// foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux.
11277  UO_foot_candle = 200000153,
11278 
11279  /// irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area.
11280  UO_irradiance_unit = 200000154,
11281 
11282  /// watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area.
11284 
11285  /// einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number.
11287 
11288  /// light unit: A unit which is a standard measure of the intensity of light.
11289  UO_light_unit = 200000157,
11290 
11291  /// watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction.
11293 
11294  /// radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation.
11296 
11297  /// microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2].
11299 
11300  /// radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves.
11301  UO_radiance_unit = 200000161,
11302 
11303  /// watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian.
11305 
11306  /// mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
11307  UO_mass_percentage = 200000163,
11308 
11309  /// mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.
11311 
11312  /// volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.
11314 
11315  /// parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance.
11317 
11318  /// parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same.
11320 
11321  /// parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same.
11323 
11324  /// parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6].
11326 
11327  /// parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9].
11329 
11330  /// parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12].
11332 
11333  /// parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15].
11335 
11336  /// gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter.
11338 
11339  /// kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters.
11341 
11342  /// gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
11343  UO_gram_per_liter = 200000175,
11344 
11345  /// milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.
11347 
11348  /// unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution.
11350 
11351  /// unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter.
11353 
11354  /// unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter.
11355  UO_unit_per_liter = 200000179,
11356 
11357  /// mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density).
11359 
11360  /// enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute.
11361  UO_enzyme_unit = 200000181,
11362 
11363  /// density unit: A unit which is a standard measure of the influence exerted by some mass.
11364  UO_density_unit = 200000182,
11365 
11366  /// linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object.
11368 
11369  /// kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter.
11371 
11372  /// degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
11373  UO_degree = 200000185,
11374 
11375  /// dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units.
11377 
11378  /// percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
11379  UO_percent = 200000187,
11380 
11381  /// pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry.
11382  UO_pi = 200000188,
11383 
11384  /// count unit: A dimensionless unit which denotes a simple count of things.
11385  UO_count_unit = 200000189,
11386 
11387  /// ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
11388  UO_ratio = 200000190,
11389 
11390  /// fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).
11391  UO_fraction = 200000191,
11392 
11393  /// molecule count: A dimensionless count unit which denotes the number of molecules.
11394  UO_molecule_count = 200000192,
11395 
11396  /// purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
11398 
11399  /// confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture).
11401 
11402  /// degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
11404 
11405  /// pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
11406  UO_pH = 200000196,
11407 
11408  /// liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance.
11410 
11411  /// milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg.
11413 
11414  /// microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg.
11416 
11417  /// cell concentration unit: A concentration unit which denotes the average cell number in a given volume.
11419 
11420  /// cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter.
11422 
11423  /// catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume.
11425 
11426  /// katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter.
11428 
11429  /// katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter.
11430  UO_katal_per_liter = 200000204,
11431 
11432  /// volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution.
11434 
11435  /// milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution.
11437 
11438  /// milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
11440 
11441  /// gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.
11443 
11444  /// deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
11445  UO_deciliter = 200000209,
11446 
11447  /// colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
11449 
11450  /// plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume.
11452 
11453  /// colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume.
11455 
11456  /// colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter.
11458 
11459  /// plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume.
11461 
11462  /// plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter.
11464 
11465  /// disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second.
11467 
11468  /// electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field.
11470 
11471  /// volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
11472  UO_volt = 200000218,
11473 
11474  /// electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons.
11475  UO_electric_charge = 200000219,
11476 
11477  /// coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second.
11478  UO_coulomb = 200000220,
11479 
11480  /// dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.
11481  UO_dalton = 200000221,
11482 
11483  /// kilodalton: A mass unit which is equal to one thousand daltons.
11484  UO_kilodalton = 200000222,
11485 
11486  /// watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour.
11487  UO_watt_hour = 200000223,
11488 
11489  /// kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
11490  UO_kilowatt_hour = 200000224,
11491 
11492  /// magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field.
11494 
11495  /// weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt.
11496  UO_weber = 200000226,
11497 
11498  /// magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
11500 
11501  /// tesla: A magnetic flux density unit which is equal to one weber per square meter.
11502  UO_tesla = 200000228,
11503 
11504  /// volt-hour: A magnetic flux unit which is equal to 3600 Wb.
11505  UO_volt_hour = 200000229,
11506 
11507  /// kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
11508  UO_kilovolt_hour = 200000230,
11509 
11510  /// information unit: A unit which is a standard measure of the amount of information.
11511  UO_information_unit = 200000231,
11512 
11513  /// bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1).
11514  UO_bit = 200000232,
11515 
11516  /// byte: An information unit which is equal to 8 bits.
11517  UO_byte = 200000233,
11518 
11519  /// kilobyte: An information unit which is equal to 1000 bytes.
11520  UO_kilobyte = 200000234,
11521 
11522  /// megabyte: An information unit which is equal to 1000 kB.
11523  UO_megabyte = 200000235,
11524 
11525  /// image resolution unit: An information unit which is a standard measure of the detail an image holds.
11527 
11528  /// chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image.
11530 
11531  /// dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel.
11533 
11534  /// spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels.
11536 
11537  /// dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space.
11538  UO_dots_per_inch = 200000240,
11539 
11540  /// micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
11541  UO_micron_pixel = 200000241,
11542 
11543  /// pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions.
11544  UO_pixels_per_inch = 200000242,
11545 
11546  /// pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image.
11548 
11549  /// base pair: A count unit which contains one nucleotide.
11550  UO_base_pair = 200000244,
11551 
11552  /// kibibyte: An information unit which is equal to 1024 B.
11553  UO_kibibyte = 200000245,
11554 
11555  /// mebibyte: An information unit which is equal to 1024 KiB.
11556  UO_mebibyte = 200000246,
11557 
11558  /// millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V.
11559  UO_millivolt = 200000247,
11560 
11561  /// kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
11562  UO_kilovolt = 200000248,
11563 
11564  /// microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V.
11565  UO_microvolt = 200000249,
11566 
11567  /// nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V.
11568  UO_nanovolt = 200000250,
11569 
11570  /// picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V.
11571  UO_picovolt = 200000251,
11572 
11573  /// megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
11574  UO_megavolt = 200000252,
11575 
11576  /// surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.
11578 
11579  /// newton per meter: A surface tension unit which is equal to one newton per meter.
11580  UO_newton_per_meter = 200000254,
11581 
11582  /// dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
11583  UO_dyne_per_cm = 200000255,
11584 
11585  /// viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
11586  UO_viscosity_unit = 200000256,
11587 
11588  /// pascal second: A viscosity unit which is equal to one pascale per second.
11589  UO_pascal_second = 200000257,
11590 
11591  /// poise: A viscosity unit which is equal to one dyne second per square centimeter.
11592  UO_poise = 200000258,
11593 
11594  /// decibel: An ratio unit which is an indicator of sound power per unit area.
11595  UO_decibel = 200000259,
11596 
11597  /// effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human.
11599 
11600  /// conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium.
11601  UO_conduction_unit = 200000261,
11602 
11603  /// electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor).
11605 
11606  /// heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature.
11608 
11609  /// siemens: An electrical conduction unit which is equal to A/V.
11610  UO_siemens = 200000264,
11611 
11612  /// watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
11614 
11615  /// electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J.
11616  UO_electronvolt = 200000266,
11617 
11618  /// electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart.
11620 
11621  /// volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart.
11622  UO_volt_per_meter = 200000268,
11623 
11624  /// absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light.
11625  UO_absorbance_unit = 200000269,
11626 
11627  /// volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
11629 
11630  /// microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
11632 
11633  /// millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth.
11635 
11636  /// milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters.
11638 
11639  /// microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters.
11641 
11642  /// nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters.
11644 
11645  /// amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container.
11647 
11648  /// ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited.
11649  UO_ug_disk = 200000277,
11650 
11651  /// nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited.
11652  UO_nmole_disk = 200000278,
11653 
11654  /// milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter.
11656 
11657  /// rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
11658  UO_rate_unit = 200000280,
11659 
11660  /// count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
11662 
11663  /// count per molar second: A rate unit which is equal to one over one molar second.
11665 
11666  /// kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares..
11668 
11669  /// count per nanomolar: A rate unit which is equal to one over one nanomolar.
11671 
11672  /// count per molar: A rate unit which is equal to one over one molar.
11673  UO_count_per_molar = 200000285,
11674 
11675  /// microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.
11676  UO_microgram_per_liter = 200000301
11677 }; // enum CVID
11678 
11679 
11680 /// Information about an ontology or CV source and a short 'lookup' tag to refer to.
11682 {
11683  /// the short label to be used as a reference tag with which to refer to this particular Controlled Vocabulary source description (e.g., from the cvLabel attribute, in CVParamType elements).
11684  std::string id;
11685 
11686  /// the URI for the resource.
11687  std::string URI;
11688 
11689  /// the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
11690  std::string fullName;
11691 
11692  /// the version of the CV from which the referred-to terms are drawn.
11693  std::string version;
11694 
11695  /// returns true iff id, URI, fullName, and version are all pairwise equal
11696  bool operator==(const CV& that) const;
11697 
11698  /// returns ture iff id, URI, fullName, and version are all empty
11699  bool empty() const;
11700 };
11701 
11702 
11703 /// returns a CV object for the specified namespace (prefix);
11704 /// currently supported namespaces are: MS UO
11705 PWIZ_API_DECL const CV& cv(const std::string& prefix);
11706 
11707 
11708 /// structure for holding CV term info
11710 {
11711  CVID cvid;
11712  std::string id;
11713  std::string name;
11714  std::string def;
11716 
11717  typedef std::vector<CVID> id_list;
11720  std::multimap<std::string, CVID> otherRelations;
11721  std::vector<std::string> exactSynonyms;
11722  std::multimap<std::string, std::string> propertyValues;
11723 
11724  CVTermInfo() : cvid((CVID)-1) {}
11725  const std::string& shortName() const;
11726  std::string prefix() const;
11727 };
11728 
11729 
11730 /// returns CV term info for the specified CVID
11731 PWIZ_API_DECL const CVTermInfo& cvTermInfo(CVID cvid);
11732 
11733 
11734 /// returns CV term info for the specified id (accession number)
11735 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const char* id);
11736 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const std::string& id);
11737 
11738 
11739 /// returns true iff child IsA parent in the CV
11740 PWIZ_API_DECL bool cvIsA(CVID child, CVID parent);
11741 
11742 
11743 /// returns vector of all valid CVIDs
11744 PWIZ_API_DECL const std::vector<CVID>& cvids();
11745 
11746 
11747 } // namespace cv
11748 } // namespace pwiz
11749 
11750 
11751 #endif // _CV_HPP_
11752 
11753 
std::string id
Definition: cv.hpp:11712
UO_liter_per_kilogram
liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogra...
Definition: cv.hpp:11409
MS_2E_Mass_Spectrum
2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value ...
Definition: cv.hpp:1371
MS_static_field
static field: An electric or magnetic field that does not change in time.
Definition: cv.hpp:1368
MS_SEQUEST_PeptideRankSp
SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.
Definition: cv.hpp:3924
MS_nanospray
nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min...
Definition: cv.hpp:1614
MS_contact_address
contact address: Postal address of the contact person or organization.
Definition: cv.hpp:2259
MS_thermospray_inlet
thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heat...
Definition: cv.hpp:324
MS_modification_specificity_protein_N_term
modification specificity protein N-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:6462
MS_Mascot_input_parameter
Mascot input parameter: Search engine input parameters specific to Mascot.
Definition: cv.hpp:6576
UNIMOD_4_ONE_Delta_H__2_O__1_
4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
Definition: cv.hpp:9375
MS_p_value_OBSOLETE
p-value: Quality estimation by p-value.
Definition: cv.hpp:3855
MS_TOPP_SpectraFilterMarkerMower
TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks. ...
Definition: cv.hpp:6705
UNIMOD_Ub_VME
Ub-VME: Ubiquitin vinylmethylester.
Definition: cv.hpp:10524
MS_Applied_Biosystems_instrument_model
Applied Biosystems instrument model: Applied Biosystems instrument model.
Definition: cv.hpp:1932
UNIMOD_Guanidinyl
Guanidinyl: Guanidination.
Definition: cv.hpp:7980
MS_senior_author
senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
Definition: cv.hpp:6390
MS_heavy_labeled_peptide
heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isoto...
Definition: cv.hpp:3222
MS_retention_time_window_width
retention time window width: The full width of a retention time window for a chromatographic peak...
Definition: cv.hpp:5976
MS_H_PINS_retention_time_normalization_standard
H-PINS retention time normalization standard: The de facto standard providing the retention times at ...
Definition: cv.hpp:3258
MS_continuous_mass_spectrum
continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded...
Definition: cv.hpp:567
UNIMOD_Lys_loss
Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
Definition: cv.hpp:8415
std::string id
the short label to be used as a reference tag with which to refer to this particular Controlled Vocab...
Definition: cv.hpp:11684
UNIMOD_Biotin
Biotin: Biotinylation.
Definition: cv.hpp:7860
UNIMOD_Met__Hpg
Met->Hpg: Methionine replacement by homopropargylglycine.
Definition: cv.hpp:9573
MS_modification_probability
modification probability: The a priori probability of a modification.
Definition: cv.hpp:5883
MS_ProteomeDiscoverer_Mascot_X_Static_Modification
ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search...
Definition: cv.hpp:5208
MS_MassHunter_BioConfirm
MassHunter BioConfirm: Software for protein characterization.
Definition: cv.hpp:2565
UO_plaque_forming_unit_per_milliliter
plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in o...
Definition: cv.hpp:11463
MS_DeBunker_score
DeBunker:score: Score specific to DeBunker.
Definition: cv.hpp:6186
MS_solariX
solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
Definition: cv.hpp:4893
MS_mass_defect
mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom...
Definition: cv.hpp:906
UO_dynamic_range_unit
dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast av...
Definition: cv.hpp:11532
UNIMOD_Puromycin
Puromycin: Puromycin.
Definition: cv.hpp:9723
UNIMOD_Glycerophospho
Glycerophospho: Glycerophospho.
Definition: cv.hpp:8652
MS_SEQUEST_DescriptionLines
SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
Definition: cv.hpp:3372
MS_free_electron_laser
free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which...
Definition: cv.hpp:3102
MS_tolerance_on_types_OBSOLETE
tolerance on types: OBSOLETE: Tolerance on types.
Definition: cv.hpp:3501
MS_coated_glass_plate
coated glass plate: Coated glass plate.
Definition: cv.hpp:6081
MS_ITRAQAnalyzer
ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS expe...
Definition: cv.hpp:6675
MS_GCT_Premier
GCT Premier: Waters oa-ToF based GCT Premier.
Definition: cv.hpp:5565
UNIMOD_Gln__Pro
Gln->Pro: Gln->Pro substitution.
Definition: cv.hpp:9132
MS_peptide_labeling_state
peptide labeling state: A state description of how a peptide might be isotopically or isobarically la...
Definition: cv.hpp:3219
MS_ProfileAnalysis
ProfileAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2700
MS_param__z_1_ion
param: z+1 ion: Parameter information, type of product: z+1 ion.
Definition: cv.hpp:4464
UNIMOD_Biotin_Thermo_21901_2H2O
Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
Definition: cv.hpp:10650
UNIMOD_Label_13C_4_15N_1_
Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
Definition: cv.hpp:10605
UO_disintegrations_per_second
disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:11466
MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE
ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application search...
Definition: cv.hpp:5193
MS_Cleavage_agent_regular_expression
Cleavage agent regular expression: Regular expressions for cleavage enzymes.
Definition: cv.hpp:3843
MS_isobaric_label_quantitation_analysis
isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow...
Definition: cv.hpp:6309
MS_LCQ_Classic
LCQ Classic: ThermoFinnigan LCQ Classic MS.
Definition: cv.hpp:711
MS_frag__z_2_ion
frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
Definition: cv.hpp:4353
MS_SEQUEST_PeptideSp
SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
Definition: cv.hpp:3921
MS_mass_to_charge_ratio
mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by divid...
Definition: cv.hpp:225
MS_Element_GD
Element GD: Thermo Scientific Element GD Glow Discharge MS.
Definition: cv.hpp:2460
UNIMOD_Propionamide_2H_3_
Propionamide:2H(3): Acrylamide d3.
Definition: cv.hpp:8043
MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time
two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatograp...
Definition: cv.hpp:6552
MS_NG_5400
NG-5400: Waters NG-5400 MS.
Definition: cv.hpp:747
MS_liquid_chromatography_separation
liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the m...
Definition: cv.hpp:7101
UNIMOD_mTRAQ_13C_6_15N_2_
mTRAQ:13C(6)15N(2): MTRAQ heavy.
Definition: cv.hpp:10617
MS_product_ion_drift_time_OBSOLETE
product ion drift time: The ion drift time of an MS2 product ion.
Definition: cv.hpp:6165
MS_CRM_OBSOLETE
CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and...
Definition: cv.hpp:1008
MS_ion_reaction
ion reaction: Chemical transformation involving an ion.
Definition: cv.hpp:1740
UNIMOD_Biotin_phenacyl
Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
Definition: cv.hpp:9429
MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage
ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that mu...
Definition: cv.hpp:5268
MS_Bruker_Daltonics_EVOQ_series
Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
Definition: cv.hpp:7173
MS_wavelength_array
wavelength array: A data array of electromagnetic radiation wavelength values.
Definition: cv.hpp:2361
MS_anti_aromatic_ion
anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
Definition: cv.hpp:1488
MS_deisotoping
deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is comm...
Definition: cv.hpp:201
UO_mass_density_unit
mass density unit: A density unit which is a standard measure of the mass of a substance in a given v...
Definition: cv.hpp:10980
MS_leading_protein
leading protein: At least one protein within each group should be annotated as a leading protein to i...
Definition: cv.hpp:7494
MS_Scaffold__Minimum_Peptide_Probability
Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for pro...
Definition: cv.hpp:4971
MS_TIC
TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/...
Definition: cv.hpp:1257
UNIMOD_Lys__Tyr
Lys->Tyr: Lys->Tyr substitution.
Definition: cv.hpp:10173
UNIMOD_Ala__Glu
Ala->Glu: Ala->Glu substitution.
Definition: cv.hpp:8901
MS_electromagnetic_radiation_chromatogram
electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function o...
Definition: cv.hpp:2976
MS_selected_reaction_monitoring_chromatogram
selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measureme...
Definition: cv.hpp:4659
UNIMOD_DiART6plex
DiART6plex: Representative mass and accurate mass for 114.
Definition: cv.hpp:10788
MS_TOPP_IDPosteriorErrorProbability
TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model...
Definition: cv.hpp:6864
UNIMOD_Ala__Tyr
Ala->Tyr: Ala->Tyr substitution.
Definition: cv.hpp:9915
MS_chromatogram
chromatogram: The representation of detector response versus time.
Definition: cv.hpp:2391
MS_MRMaid
MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of i...
Definition: cv.hpp:6948
MS_SEQUEST_deltacn
SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
Definition: cv.hpp:3774
MS_param__z_ion
param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side...
Definition: cv.hpp:4062
MS_m_z_difference
m/z difference (delta m/z): The difference between a theoretically calculated m/z and the correspondi...
Definition: cv.hpp:6192
UNIMOD_Val__Pro
Val->Pro: Val->Pro substitution.
Definition: cv.hpp:10401
MS_collision_energy_ramp_end
collision energy ramp end: Collision energy at the end of the collision energy ramp.
Definition: cv.hpp:6327
MS_electron_induced_excitation_in_organics
electron-induced excitation in organics: The reaction of an ion with an electron in which the transla...
Definition: cv.hpp:1053
UNIMOD_probiotinhydrazide
probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
Definition: cv.hpp:8499
UNIMOD_Diphthamide
Diphthamide: Diphthamide.
Definition: cv.hpp:8541
UNIMOD_GluGluGlu
GluGluGlu: Triglutamyl.
Definition: cv.hpp:8739
MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only
ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern...
Definition: cv.hpp:5166
MS_Paragon_confidence
Paragon:confidence: The Paragon result 'Confidence'.
Definition: cv.hpp:3807
UNIMOD_DHP
DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
Definition: cv.hpp:8775
UNIMOD_Lysbiotinhydrazide
Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
Definition: cv.hpp:8493
MS_cross_linking_score
cross-linking score: Cross-linking scoring value.
Definition: cv.hpp:7827
UNIMOD_Arg__Tyr
Arg->Tyr: Arg->Tyr substitution.
Definition: cv.hpp:10332
MS_QuantAnalysis
QuantAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2724
MS_Bioworks
Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
Definition: cv.hpp:2052
MS_MZmine
MZmine: A framework for differential analysis of mass spectrometry data.
Definition: cv.hpp:7317
MS_m_z_calibration
m/z calibration: Calibration of data point m/z positions.
Definition: cv.hpp:4701
UNIMOD_FAD
FAD: Flavin adenine dinucleotide.
Definition: cv.hpp:7974
MS_ProteomeDiscoverer_Xtract_Resolution_At_400
ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
Definition: cv.hpp:5175
UO_mass_volume_percentage
mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in...
Definition: cv.hpp:11310
MS_thresholding
thresholding (low intensity data point removal): The removal of very low intensity data points that a...
Definition: cv.hpp:2283
UO_plane_angle_unit
plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the...
Definition: cv.hpp:11190
MS_solid_sample_state
solid sample state: State if the sample is in solid form.
Definition: cv.hpp:264
MS_ProteomeDiscoverer_max_number_neutral_loss
ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
Definition: cv.hpp:7263
MS_sequential_m_z_separation_method
sequential m/z separation method: Sequential m/z separation method.
Definition: cv.hpp:1764
MS_ProteoSuite
ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
Definition: cv.hpp:6660
MS_charge_state
charge state: The charge state of the ion, single or multiple and positive or negatively charged...
Definition: cv.hpp:234
UNIMOD_HexNAc_2_dHex_1_
HexNAc(2)dHex(1): HexNAc2dHex1.
Definition: cv.hpp:8148
MS_CompassXport
CompassXport: Bruker stand-alone software for data conversion.
Definition: cv.hpp:2667
MS_Continuum_Mass_Spectrum
Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded ...
Definition: cv.hpp:570
MS_SEQUEST_sort_by_Sequence
SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
Definition: cv.hpp:3534
UO_millimolal
millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m...
Definition: cv.hpp:11031
MS_delta_m_z
delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally...
Definition: cv.hpp:6189
MS_Phenyx_Turbo
Phenyx:Turbo: The turbo mode parameter in Phenyx.
Definition: cv.hpp:4386
MS_radical_ion
radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state...
Definition: cv.hpp:1548
MS_positive_ion
positive ion: An atomic or molecular species having a net positive electric charge.
Definition: cv.hpp:1542
UNIMOD_AMTzHexNAc2
AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
Definition: cv.hpp:9633
MS_MS_Numpress_short_logged_float_compression
MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compress...
Definition: cv.hpp:7233
MS_normalization_to_mean_of_sum_of_all_proteins
normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum ...
Definition: cv.hpp:5841
MS_Paragon_score
Paragon:score: The Paragon result 'Score'.
Definition: cv.hpp:3804
MS_____BD__
(?=[BD]): Regular expression for Asp-N.
Definition: cv.hpp:4086
UO_liter
liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3]...
Definition: cv.hpp:11121
MS_SRM_peptide_level_quantitation
SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
Definition: cv.hpp:7134
MS_SEQUEST_Chromatogram
SEQUEST:Chromatogram:
Definition: cv.hpp:3612
UNIMOD_PhosphoHex
PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
Definition: cv.hpp:8679
UNIMOD_Methylphosphonate
Methylphosphonate: Methylphosphonylation.
Definition: cv.hpp:9339
MS_HiRes_MALDI
HiRes MALDI: IonSpec HiResMALDI MS.
Definition: cv.hpp:696
MS_Paragon_unused_protscore
Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
Definition: cv.hpp:3798
UNIMOD_Label_13C_6_15N_2__GlyGly
Label:13C(6)15N(2)+GlyGly: 13C(6) 15N(2) Lysine glygly.
Definition: cv.hpp:9516
UNIMOD_Gly__Asp
Gly->Asp: Gly->Asp substitution.
Definition: cv.hpp:8994
MS_pyrolysis_mass_spectrometry
pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point...
Definition: cv.hpp:1188
UNIMOD_Val__Phe
Val->Phe: Val->Phe substitution.
Definition: cv.hpp:9240
MS_scan_number_s__OBSOLETE
scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
Definition: cv.hpp:3651
UNIMOD_Thiazolidine
Thiazolidine: Addition of Carbon to cysteine.
Definition: cv.hpp:9804
MS_param__a_ion_NH3_DEPRECATED
param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammoni...
Definition: cv.hpp:3744
MS_CRF
CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond ...
Definition: cv.hpp:1002
UO_hour
hour: A time unit which is equal to 3600 seconds or 60 minutes.
Definition: cv.hpp:10920
MS_instrument
instrument: Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1830
UNIMOD_Arg_loss
Arg-loss: Loss of arginine due to transpeptidation.
Definition: cv.hpp:10578
MS_percent_collision_energy_ramp_end
percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percen...
Definition: cv.hpp:6945
MS_membrane_inlet
membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly t...
Definition: cv.hpp:1605
UO_microsievert
microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv...
Definition: cv.hpp:11238
MS_de_facto_standard
de facto standard: A practice or product that has become a standard not because it has been approved ...
Definition: cv.hpp:3249
UO_pixels_per_millimeter
pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels ...
Definition: cv.hpp:11547
MS_PAnalyzer
PAnalyzer: PAnalyzer software for getting protein evidence categories.
Definition: cv.hpp:6519
MS_mzidLib_Omssa2Mzid
mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
Definition: cv.hpp:7002
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr paramete...
Definition: cv.hpp:5373
UNIMOD_Retinylidene
Retinylidene: Retinal.
Definition: cv.hpp:8556
UNIMOD_Xle__Ala
Xle->Ala: Leu/Ile->Ala substitution.
Definition: cv.hpp:10125
UNIMOD_Cation_Ca_II_
Cation:Ca[II]: Replacement of 2 protons by calcium.
Definition: cv.hpp:9681
MS_cross_linking_attribute
cross-linking attribute: Cross-linking attribute.
Definition: cv.hpp:7815
UO_microgray
microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy...
Definition: cv.hpp:11244
MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE
decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabido...
Definition: cv.hpp:4131
MS_label_free_protein_level_quantitation
label-free protein level quantitation: Label-free protein level quantitation.
Definition: cv.hpp:6348
UNIMOD_Dehydro
Dehydro: Half of a disulfide bridge.
Definition: cv.hpp:8538
MS_intensity_of_precursor_ion
intensity of precursor ion: The intensity of the precursor ion.
Definition: cv.hpp:3729
MS_decoy_DB_from_IPI_cow_OBSOLETE
decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus...
Definition: cv.hpp:4146
MS_mass_spectrometer_file_format
mass spectrometer file format: The format of the file being used. This could be a instrument or vendo...
Definition: cv.hpp:2136
UNIMOD_cysTMT6plex
cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
Definition: cv.hpp:9744
MS_Phenyx_Peptides1
Phenyx:Peptides1: First number of phenyx result "#Peptides".
Definition: cv.hpp:4422
MS_peak_list_scans
peak list scans: A list of scan numbers and or scan ranges associated with a peak list...
Definition: cv.hpp:2925
UO_microsecond
microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
Definition: cv.hpp:10911
UNIMOD_iodoTMT
iodoTMT: Native iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:10683
MS_autoflex
autoflex: Bruker Daltonics' autoflex: MALDI TOF.
Definition: cv.hpp:4905
MS_DB_PI_filter_maximum
DB PI filter maximum: Maximum value of isoelectric point filter.
Definition: cv.hpp:3891
MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions
ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5334
MS_InternalCalibration
InternalCalibration: Applies an internal calibration.
Definition: cv.hpp:2793
MS_light_labeled_sample
light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy".
Definition: cv.hpp:6402
MS_dissociative_ionization
dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to fo...
Definition: cv.hpp:1584
MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold
ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that thres...
Definition: cv.hpp:4560
MS_quantitation_software_version_OBSOLETE
quantitation software version: Quantitation software version.
Definition: cv.hpp:3726
MS_Bruker_U2_format
Bruker U2 format: Bruker HyStar U2 file format.
Definition: cv.hpp:2994
MS_Quistor
Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensi...
Definition: cv.hpp:393
MS_BioTOF_Q
BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
Definition: cv.hpp:663
MS_inductively_coupled_plasma
inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied ...
Definition: cv.hpp:294
MS_field_ionization
field ionization: The removal of electrons from any species by interaction with a high electric field...
Definition: cv.hpp:1089
MS_number_of_precursor_ion_observations
number of precursor ion observations: The number of times the specific precursor ion has been observe...
Definition: cv.hpp:6972
UNIMOD_CyDye_Cy5
CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:8787
MS_TraML_format
TraML format: The TraML format for transitions in SRM from the PSI. File extension '...
Definition: cv.hpp:7524
MS_EVOQ_Elite
EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
Definition: cv.hpp:7182
MS_LC_MS_feature_intensity
LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
Definition: cv.hpp:5775
MS_MSn_spectrum
MSn spectrum: MSn refers to multi-stage MS/MS experiments designed to record product ion spectra wher...
Definition: cv.hpp:2211
MS_mass_chromatogram
mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a functi...
Definition: cv.hpp:2973
MS_EA
EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:870
MS_TOPP_OpenSwathRTNormalizer
TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized ...
Definition: cv.hpp:6894
MS_ProteomeDiscoverer_Target_FDR_Strict
ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR...
Definition: cv.hpp:5247
MS_domain_range
domain range: Domain range of a numerical value.
Definition: cv.hpp:7203
MS_coefficient_of_variation
coefficient of variation: Variation of a set of signal measurements calculated as the standard deviat...
Definition: cv.hpp:5904
UNIMOD_Cys__Xle
Cys->Xle: Cys->Leu/Ile substitution.
Definition: cv.hpp:9930
UNIMOD_Tyr__Asp
Tyr->Asp: Tyr->Asp substitution.
Definition: cv.hpp:9288
MS_mathieu_stability_diagram
mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that ...
Definition: cv.hpp:1356
MS_Asp_N
Asp-N: Endoproteinase Asp-N.
Definition: cv.hpp:4164
UNIMOD_Trioxidation
Trioxidation: Cysteine oxidation to cysteic acid.
Definition: cv.hpp:8475
PWIZ_API_DECL const CVTermInfo & cvTermInfo(CVID cvid)
returns CV term info for the specified CVID
MS_QSTAR_XL
QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
Definition: cv.hpp:2490
UNIMOD_Phosphogluconoylation
Phosphogluconoylation: Phosphogluconoylation.
Definition: cv.hpp:10692
UNIMOD_Xlink_DST
Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.
Definition: cv.hpp:9834
MS_MzStar
MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format...
Definition: cv.hpp:2082
MS_frag__a_ion___NH3
frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia...
Definition: cv.hpp:3984
MS_pre_ionization_state
pre-ionization state: An electronic state capable of undergoing auto-Ionization.
Definition: cv.hpp:1623
UNIMOD_Ser__Gly
Ser->Gly: Ser->Gly substitution.
Definition: cv.hpp:9213
MS_selected_reaction_monitoring
selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected ...
Definition: cv.hpp:831
MS_PASSEL_transition_group_browser_URI
PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas...
Definition: cv.hpp:6378
MS_AB_SCIEX_TOF_TOF_Series_Explorer_Software
AB SCIEX TOF/TOF Series Explorer Software: AB SCIEX or Applied Biosystems software for TOF/TOF data a...
Definition: cv.hpp:4695
MS_TOF_MS
TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free r...
Definition: cv.hpp:1269
MS_chemical_compound_formula
chemical compound formula: A combination of symbols used to express the chemical composition of a com...
Definition: cv.hpp:3141
MS_SEQUEST_InfoAndLog
SEQUEST:InfoAndLog:
Definition: cv.hpp:3615
MS_reflectron
reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direc...
Definition: cv.hpp:1308
UNIMOD_glycidamide
glycidamide: Glycidamide adduct.
Definition: cv.hpp:9813
MS_Compass
Compass: Bruker Compass software.
Definition: cv.hpp:2652
MS_Element_XR
Element XR: Thermo Scientific Element XR HR-ICP-MS.
Definition: cv.hpp:2454
MS_Thermo_Electron_instrument_model
Thermo Electron instrument model: Thermo Electron Corporation instrument model.
Definition: cv.hpp:1923
MS_apex_ultra
apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:2601
UNIMOD_Ser__Trp
Ser->Trp: Ser->Trp substitution.
Definition: cv.hpp:9189
MS_Byonic_Delta_Score
Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with di...
Definition: cv.hpp:7077
MS_protein_ambiguity_group_result_details
protein ambiguity group result details:
Definition: cv.hpp:3747
MS_protein_cluster_details
protein cluster details: Details describing a protein cluster.
Definition: cv.hpp:7506
MS_Phenyx_Conflict_Resolution
Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorit...
Definition: cv.hpp:4410
MS_number_of_spectra_searched
number of spectra searched: Number of spectra in a search.
Definition: cv.hpp:7593
UO_count_per_molar_second
count per molar second: A rate unit which is equal to one over one molar second.
Definition: cv.hpp:11664
UNIMOD_GluGlu
GluGlu: Diglutamyl.
Definition: cv.hpp:8736
MS_assay_label_attribute
assay label attribute: Attribute describing an assay label.
Definition: cv.hpp:6621
MS_SEQUEST_out_file_format
SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
Definition: cv.hpp:3882
MS_membrane_separator
membrane separator: A device to separate carrier molecules from analyte molecules on the basis of eas...
Definition: cv.hpp:303
UNIMOD_His__Gly
His->Gly: His->Gly substitution.
Definition: cv.hpp:10104
MS_zoom_scan
zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achi...
Definition: cv.hpp:1941
MS_TOPP_HighResPrecursorMassCorrector
TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution da...
Definition: cv.hpp:6771
MS_sample_batch
sample batch: Sample batch lot identifier.
Definition: cv.hpp:273
UO_mole_fraction
mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of th...
Definition: cv.hpp:11052
MS_ProteomeDiscoverer_Initial_minimal_peptide_probability
ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contri...
Definition: cv.hpp:5430
MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered
ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched ...
Definition: cv.hpp:5277
MS_metastable_ion
metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation...
Definition: cv.hpp:1524
MS_frag__c_ion
frag: c ion: Fragmentation information, type of product: c ion.
Definition: cv.hpp:3972
MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses
ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments...
Definition: cv.hpp:5304
UNIMOD_Ethanolamine
Ethanolamine: Carboxyl modification with ethanolamine.
Definition: cv.hpp:9351
UNIMOD_QAT_2H_3_
QAT:2H(3): APTA d3.
Definition: cv.hpp:8235
MS_area_peak_picking
area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to...
Definition: cv.hpp:2937
MS_protein
protein: A compound composed of one or more chains of amino acids in a specific order determined by t...
Definition: cv.hpp:3195
MS_PQD
PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q...
Definition: cv.hpp:2304
UNIMOD_Asn__Phe
Asn->Phe: Asn->Phe substitution.
Definition: cv.hpp:10224
UNIMOD_Methyl
Methyl: Methylation.
Definition: cv.hpp:7929
UNIMOD_NBS
NBS: Shimadzu NBS-12C.
Definition: cv.hpp:8202
MS_alpha_cleavage
alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to th...
Definition: cv.hpp:1650
UO_nanometer
nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m...
Definition: cv.hpp:10878
UNIMOD_Menadione_HQ
Menadione-HQ: Menadione hydroquinone derivative.
Definition: cv.hpp:9414
UO_steradian
steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere b...
Definition: cv.hpp:11199
MS_precursor_activation_attribute
precursor activation attribute: Precursor Activation Attribute.
Definition: cv.hpp:1983
MS_quadratic
quadratic: The mass scan is done in quadratic mode.
Definition: cv.hpp:441
MS_SEQUEST_ProcessAll
SEQUEST:ProcessAll:
Definition: cv.hpp:3591
MS_micrOTOF_Q_III
micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7188
MS_SRM_feature_level_quantitation
SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
Definition: cv.hpp:7131
MS_Bruker_Daltonics_solarix_series
Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4890
MS_ProteomeDiscoverer_Residue_substitution_list
ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides...
Definition: cv.hpp:5463
UNIMOD_Pyridylethyl
Pyridylethyl: S-pyridylethylation.
Definition: cv.hpp:7926
MS_spectral_count_peptide_level_quantitation
spectral count peptide level quantitation: Spectral count peptide level quantitation.
Definition: cv.hpp:6330
MS_peptide_consensus_attribute
peptide consensus attribute: Attribute describing a peptide consensus.
Definition: cv.hpp:6636
MS_SEQUEST_sort_by_XCorr
SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
Definition: cv.hpp:3564
UNIMOD_CarbamidomethylDTT
CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
Definition: cv.hpp:9555
MS_PSM_level_identification_confidence_metric
PSM-level identification confidence metric: Identification confidence metric for a peptide spectrum m...
Definition: cv.hpp:7332
MS_FlexAnalysis
FlexAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2058
MS_normalized_retention_time
normalized retention time: A time interval from the start of chromatography when an analyte exits a s...
Definition: cv.hpp:3240
UNIMOD_Thr__Xle
Thr->Xle: Thr->Leu/Ile substitution.
Definition: cv.hpp:9234
MS_EMR_spectrum
EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagneti...
Definition: cv.hpp:2955
UNIMOD_EHD_diphenylpentanone
EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
Definition: cv.hpp:10647
MS_ProteomeDiscoverer_3__Dynamic_Modification
ProteomeDiscoverer:3. Dynamic Modification: Determine 3rd dynamic post-translational modifications (P...
Definition: cv.hpp:5421
MS_Phenyx_Pepzscore
Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
Definition: cv.hpp:4434
UNIMOD_BHAc
BHAc: N-biotinyl-6-aminohexanoyl.
Definition: cv.hpp:9774
MS_normalized_XIC_area
normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)...
Definition: cv.hpp:5832
MS_postprocessing_software
postprocessing software: Postprocessing software.
Definition: cv.hpp:7533
MS_TOPP_XTandemAdapter
TOPP XTandemAdapter: Identifies MS/MS spectra using the external program XTandem. ...
Definition: cv.hpp:6846
MS_SQID
SQID: Software for data analysis of peptides and proteins.
Definition: cv.hpp:5913
MS_constant_OBSOLETE
constant: When resolution is constant with respect to m/z.
Definition: cv.hpp:417
MS_Libra
Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-cha...
Definition: cv.hpp:7164
MS_Finnigan_MAT_instrument_model
Finnigan MAT instrument model: Finnigan MAT instrument model.
Definition: cv.hpp:1926
UO_siemens
siemens: An electrical conduction unit which is equal to A/V.
Definition: cv.hpp:11610
MS_Hitachi_instrument_model
Hitachi instrument model: Hitachi instrument model.
Definition: cv.hpp:1911
UO_meter_per_second
meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter di...
Definition: cv.hpp:11106
MS_purgatory
purgatory: Terms that will likely become obsolete unless there are wails of dissent.
Definition: cv.hpp:1884
UNIMOD_FormylMet
FormylMet: Addition of N-formyl met.
Definition: cv.hpp:8052
MS_SRM
SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z sel...
Definition: cv.hpp:834
MS_Arg_C
Arg-C: Endoproteinase Arg-C.
Definition: cv.hpp:4158
UNIMOD_iTRAQ4plex
iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
Definition: cv.hpp:8274
MS_DBExporter
DBExporter: Exports data from an OpenMS database to a file.
Definition: cv.hpp:2778
UO_Roentgen_equivalent_man
Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one siev...
Definition: cv.hpp:11241
MS_Accela_PDA
Accela PDA: Accela PDA.
Definition: cv.hpp:2382
MS_ProteomeDiscoverer_Mascot_Significance_Middle
ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a deco...
Definition: cv.hpp:6975
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically ...
Definition: cv.hpp:5355
MS_____M_
(?<=M): Regular expression for CNBr.
Definition: cv.hpp:4248
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO ...
MS_base_peak
base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to t...
Definition: cv.hpp:849
MS_absorption_spectrum
absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms ...
Definition: cv.hpp:2961
MS_SEQUEST_sortCV
SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
Definition: cv.hpp:3459
MS_DI
DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vap...
Definition: cv.hpp:1026
UO_pixels_per_inch
pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a compute...
Definition: cv.hpp:11544
MS_ELEMENT2_OBSOLETE
ELEMENT2: ThermoFinnigan ELEMENT2 MS.
Definition: cv.hpp:672
MS_common_software_input_parameter
common software input parameter: Software input parameter that is shared by more than one software...
Definition: cv.hpp:6600
MS_co_eluting_ion
co-eluting ion: Co-eluting ion.
Definition: cv.hpp:4002
UO_megabyte
megabyte: An information unit which is equal to 1000 kB.
Definition: cv.hpp:11523
MS_ProteinLynx_XML_format
ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format...
Definition: cv.hpp:4938
MS_decoy_DB_accession_regexp
decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
Definition: cv.hpp:4098
MS_point_collector
point collector: A detector in which the ion beam is focused onto a point and the individual ions arr...
Definition: cv.hpp:1470
MS_FFR
FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic ...
Definition: cv.hpp:882
MS_total_ion_current_chromatogram
total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in e...
Definition: cv.hpp:954
MS_microflex_LT
microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
Definition: cv.hpp:2619
MS_t_test_p_value
t-test p-value: P-value of t-Test of two groups.
Definition: cv.hpp:5820
MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions
ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5331
MS_distinct_peptide_level_probability
distinct peptide-level probability: Probability that the reported distinct peptide sequence (irrespec...
Definition: cv.hpp:7377
MS_AXIMA_CFR_MALDI_TOF
AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
Definition: cv.hpp:2328
UNIMOD_Thr__Ala
Thr->Ala: Thr->Ala substitution.
Definition: cv.hpp:9219
MS_McLafferty_Rearrangement
McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-me...
Definition: cv.hpp:1725
MS_matrix_assisted_laser_desorption_ionization
matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are ...
Definition: cv.hpp:357
MS_wolf
wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML...
Definition: cv.hpp:2070
MS_Bruker_Agilent_YEP_nativeID_format
Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2832
UNIMOD_Cholesterol
Cholesterol: Cholesterol ester.
Definition: cv.hpp:8685
MS_even_electron_ion
even-electron ion: An ion containing no unpaired electrons in its ground electronic state...
Definition: cv.hpp:1047
MS_no_combination
no combination: Use this term if only one scan was recorded or there is no information about scans av...
Definition: cv.hpp:2919
MS_Acquity_SQD
Acquity SQD: Waters quadrupole based Acquity SQD.
Definition: cv.hpp:5616
MS_SEQUEST_sort_by_Sf
SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'...
Definition: cv.hpp:3537
MS_multiple_enzyme_combination_rules_OBSOLETE
multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead...
Definition: cv.hpp:3486
MS_MassHunter_Quantitative_Analysis
MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-...
Definition: cv.hpp:2559
MS_mzidLib_ProteoGrouper
mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files...
Definition: cv.hpp:7011
MS_contact_role
contact role: Role of the contact person.
Definition: cv.hpp:6384
MS_ProteomeDiscoverer_Minimal_peptide_weight
ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability...
Definition: cv.hpp:5436
MS_MassLynx
MassLynx: Micromass software for data acquisition and analysis.
Definition: cv.hpp:2055
MS_ProteoWizard_chainsaw
ProteoWizard chainsaw: Filters and processes protein sequence databases.
Definition: cv.hpp:6909
UNIMOD_Cys__methylaminoAla
Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ...
Definition: cv.hpp:9648
MS_DELTAplusXP
DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
Definition: cv.hpp:669
MS_dilution_series__concentration_X
dilution series, concentration X: The experimental design followed a dilution series design...
Definition: cv.hpp:5703
MS_local_retention_time
local retention time: A time interval from the start of chromatography when an analyte exits an unspe...
Definition: cv.hpp:3237
UNIMOD_Cys__Trp
Cys->Trp: Cys->Trp substitution.
Definition: cv.hpp:8913
MS_peptide
peptide: A compound of low molecular weight that is composed of two or more amino acids...
Definition: cv.hpp:3123
MS_Byonic_Peptide_LogProb
Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM w...
Definition: cv.hpp:7086
MS_plasma_desorption
plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutra...
Definition: cv.hpp:597
MS_ProteomeDiscoverer_Default_FDR_calculator
ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (...
Definition: cv.hpp:6984
MS_ProteomeDiscoverer_Number_of_input1_spectra
ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
Definition: cv.hpp:5439
MS_ProteomeDiscoverer_Min_Precursor_Mass
ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion...
Definition: cv.hpp:5079
MS_protonated_molecule
protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented...
Definition: cv.hpp:1545
MS_dynode
dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to ampli...
Definition: cv.hpp:1461
MS_internal_reference_abundance
internal reference abundance: The absolute abundance of the spiked in reference peptide or protein us...
Definition: cv.hpp:7842
MS_TOPP_FalseDiscoveryRate
TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy ...
Definition: cv.hpp:6900
UO_foot_candle
foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread ...
Definition: cv.hpp:11277
MS_API
API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas pha...
Definition: cv.hpp:984
MS_SRM_protein_level_quantitation
SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
Definition: cv.hpp:7137
MS_modification_specificity_peptide_C_term
modification specificity peptide C-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:3852
MS_product_ion_intensity
product ion intensity: The intensity of a single product ion.
Definition: cv.hpp:3954
UNIMOD_Lys__Gln
Lys->Gln: Lys->Gln substitution.
Definition: cv.hpp:9036
UNIMOD_Hydroxytrimethyl
Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
Definition: cv.hpp:8721
MS_Phenyx_Turbo_Series
Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
Definition: cv.hpp:4395
MS_ionization_efficiency_OBSOLETE
ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
Definition: cv.hpp:888
UNIMOD_Xle__Ser
Xle->Ser: Leu/Ile->Ser substitution.
Definition: cv.hpp:9048
MS_Phenyx
Phenyx: The name of the Phenyx search engine.
Definition: cv.hpp:3903
MS_SRM_transition_type
SRM transition type: The type of the transitions, e.g. target or decoy.
Definition: cv.hpp:6291
UNIMOD_DiART6plex115
DiART6plex115: Accurate mass for DiART6plex 115.
Definition: cv.hpp:10791
UO_area_density_unit
area density unit: A density unit which is a standard measure of the mass exerting an influence on a ...
Definition: cv.hpp:10986
MS_reflectron_state
reflectron state: Status of the reflectron, turned on or off.
Definition: cv.hpp:162
MS_mass_spectrum
mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function o...
Definition: cv.hpp:1290
MS_protein_level_q_value
protein-level q-value: Estimation of the q-value for proteins.
Definition: cv.hpp:5862
UNIMOD_Biotin_Thermo_21325
Biotin:Thermo-21325: Was ChromoBiotin.
Definition: cv.hpp:9531
MS_time_of_flight_mass_spectrometer
time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region aft...
Definition: cv.hpp:1266
UNIMOD_Val__Trp
Val->Trp: Val->Trp substitution.
Definition: cv.hpp:10416
MS_Amanda
Amanda: Amanda scoring system for PSM identification.
Definition: cv.hpp:7299
UO_milliliter_per_kilogram
milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogra...
Definition: cv.hpp:11412
UNIMOD_His__Ser
His->Ser: His->Ser substitution.
Definition: cv.hpp:10113
MS_PROTEINEER_spII
PROTEINEER spII: Bruker PROTEINEER spII software.
Definition: cv.hpp:2712
UNIMOD_Gly__Arg
Gly->Arg: Gly->Arg substitution.
Definition: cv.hpp:9000
MS_biological_replicate
biological replicate: The study variable is 'biological replicate'. This means, the run was generated...
Definition: cv.hpp:5682
MS_MaRiMba
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3165
MS_height_peak_picking
height peak picking: Spectral peak processing conducted on the acquired data to convert profile data ...
Definition: cv.hpp:2943
MS_fast_evaporation_MALDI_sample_preparation
fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method...
Definition: cv.hpp:6237
UNIMOD_Lys__Pro
Lys->Pro: Lys->Pro substitution.
Definition: cv.hpp:10161
MS_contact_attribute
contact attribute: Details about a person or organization to contact in case of concern or discussion...
Definition: cv.hpp:2253
MS_MaxQuant_peptide_counts__razor_unique_
MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQu...
Definition: cv.hpp:5952
UNIMOD_Delta_H_6_C_6_O_1_
Delta:H(6)C(6)O(1): Acrolein addition +94.
Definition: cv.hpp:8250
UNIMOD_DiART6plex116_119
DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
Definition: cv.hpp:10794
UO_nanoliter
nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L...
Definition: cv.hpp:11130
MS_DB_composition_target_decoy
DB composition target+decoy: Decoy database composition: database contains original (target) and deco...
Definition: cv.hpp:3873
MS_precursor_ion
precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular d...
Definition: cv.hpp:1437
MS_Orbitrap_Fusion
Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
Definition: cv.hpp:7539
MS_EM
EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:1062
MS_Phenyx_Peptides2
Phenyx:Peptides2: Second number of phenyx result "#Peptides".
Definition: cv.hpp:4425
UNIMOD_GeranylGeranyl
GeranylGeranyl: Geranyl-geranyl.
Definition: cv.hpp:7968
UNIMOD_unimod_root_node
unimod root node: The root node of the unimod modifications ontology.
Definition: cv.hpp:7851
UNIMOD_Triiodo
Triiodo: Tri-Iodination.
Definition: cv.hpp:8109
MS_GCT
GCT: Waters oa-ToF based GCT.
Definition: cv.hpp:684
MS_decoy_DB_type_shuffle
decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order...
Definition: cv.hpp:4596
UNIMOD_O_pinacolylmethylphosphonate
O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
Definition: cv.hpp:9336
MS_peptide_attribute_calculation_software
peptide attribute calculation software: Software used to predict or calculate numerical attributes of...
Definition: cv.hpp:3168
MS_frag__internal_yb_ion
frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
Definition: cv.hpp:4344
MS_Scan_Function
Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical ac...
Definition: cv.hpp:150
MS_MALDI_Synapt_MS
MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
Definition: cv.hpp:5583
UNIMOD_Label_13C_3_15N_1_
Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
Definition: cv.hpp:10602
MS_Andromeda
Andromeda: Andromeda is a peptide search engine.
Definition: cv.hpp:7302
MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold
ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score...
Definition: cv.hpp:7242
MS_spectrum_subsumable_protein
spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are di...
Definition: cv.hpp:5052
MS_Pro_Quant
Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
Definition: cv.hpp:2526
MS_NRMS
NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neu...
Definition: cv.hpp:1179
UNIMOD_Met__Arg
Met->Arg: Met->Arg substitution.
Definition: cv.hpp:9078
MS_ionization_cross_section
ionization cross section: A measure of the probability that a given ionization process will occur whe...
Definition: cv.hpp:885
MS_MALDI_matrix_application
MALDI matrix application: Attributes to describe the technique how the sample is prepared with the ma...
Definition: cv.hpp:3039
MS_superelastic_collision
superelastic collision: Collision in which the translational energy of the fast-moving collision part...
Definition: cv.hpp:1743
MS_SSRCalc
SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on the...
Definition: cv.hpp:3171
MS_DB_MW_filter
DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range...
Definition: cv.hpp:3411
UNIMOD_Gly__Met
Gly->Met: Gly->Met substitution.
Definition: cv.hpp:10074
MS_quantitation_software_name
quantitation software name: Quantitation software name.
Definition: cv.hpp:3723
MS_mass_selective_instability
mass selective instability: A method for selective ejection of ions according to their m/z value in a...
Definition: cv.hpp:1353
UNIMOD_Molybdopterin
Molybdopterin: Molybdopterin.
Definition: cv.hpp:8580
UNIMOD_Glu__His
Glu->His: Glu->His substitution.
Definition: cv.hpp:9993
MS_LTQ
LTQ: Finnigan LTQ MS.
Definition: cv.hpp:1773
MS_isolation_window_lower_offset
isolation window lower offset: The extent of the isolation window in m/z below the isolation window t...
Definition: cv.hpp:3030
MS_3100
3100: Waters quadrupole based 3100.
Definition: cv.hpp:5613
MS_space_charge_effect
space charge effect: The mutual repulsion of particles of like charge that limits the current in a ch...
Definition: cv.hpp:1365
MS_ProteomeDiscoverer_phosphoRS_score
ProteomeDiscoverer:phosphoRS score: Peptide score based on the cumulative binomial probability that t...
Definition: cv.hpp:6171
UNIMOD_Gly__His
Gly->His: Gly->His substitution.
Definition: cv.hpp:10065
MS_peptide_consensus_m_z
peptide consensus m/z: Peptide consensus mass/charge ratio.
Definition: cv.hpp:6486
UNIMOD_Farnesyl
Farnesyl: Farnesylation.
Definition: cv.hpp:7956
MS_MS1_feature_area
MS1 feature area: Area of MS1 feature.
Definition: cv.hpp:5787
UNIMOD_GlycerylPE
GlycerylPE: Glycerylphosphorylethanolamine.
Definition: cv.hpp:8595
UNIMOD_Ser__Glu
Ser->Glu: Ser->Glu substitution.
Definition: cv.hpp:10341
MS_multi_collector
multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers...
Definition: cv.hpp:513
MS_BP
BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied...
Definition: cv.hpp:852
UNIMOD_Phe__Lys
Phe->Lys: Phe->Lys substitution.
Definition: cv.hpp:10038
UNIMOD_Lys__Arg
Lys->Arg: Lys->Arg substitution.
Definition: cv.hpp:9042
MS_lowest_observed_wavelength
lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2367
MS_group_PSMs_by_sequence_with_modifications_and_charge
group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with ta...
Definition: cv.hpp:7785
UNIMOD_BMP_piperidinol
BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
Definition: cv.hpp:10566
MS_microflex_II
microflex II: Bruker Daltonics' microflex II: MALDI TOF.
Definition: cv.hpp:4896
MS_statistical_threshold
statistical threshold: Estimated statistical threshold.
Definition: cv.hpp:7737
UNIMOD_Hex_3_HexNAc_1_Pent_1_
Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
Definition: cv.hpp:8169
MS_None____OBSOLETE
None ??: None.
Definition: cv.hpp:468
MS_taxonomy__Swiss_Prot_ID
taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4647
MS_ProteomeDiscoverer_Number_of_input2_spectra
ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
Definition: cv.hpp:5442
MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions
ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative fac...
Definition: cv.hpp:5322
MS_Progenesis_protein_group_normalised_abundance
Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups ...
Definition: cv.hpp:7845
MS_isoelectric_point
isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric f...
Definition: cv.hpp:3129
MS_continuous_flow_fast_atom_bombardment
continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solut...
Definition: cv.hpp:279
MS_Compass_for_micrOTOF
Compass for micrOTOF: Bruker Compass for micrOTOF software.
Definition: cv.hpp:2658
MS_Pegasus_4D
Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
Definition: cv.hpp:6099
MS_scan_law
scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
Definition: cv.hpp:156
UO_joule
joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object ...
Definition: cv.hpp:11160
MS_frag__y_ion___NH3
frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia...
Definition: cv.hpp:3978
MS_Mascot_MinMSMSThreshold
Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1...
Definition: cv.hpp:4209
std::multimap< std::string, std::string > propertyValues
Definition: cv.hpp:11722
MS_database_IPI_arabidopsis
database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences...
Definition: cv.hpp:4119
MS_Progenesis_protein_raw_abundance
Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-...
Definition: cv.hpp:5931
MS_IRMS_OBSOLETE
IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different iso...
Definition: cv.hpp:1122
MS_base_peak_intensity
base peak intensity: The intensity of the greatest peak in the mass spectrum.
Definition: cv.hpp:1968
MS_contact_phone_number
contact phone number: Phone number of the contact person or organization.
Definition: cv.hpp:5520
MS_IonSpec_instrument_model
IonSpec instrument model: IonSpec corporation instrument model.
Definition: cv.hpp:546
MS_protein_value__median_of_peptide_ratios
protein value: median of peptide ratios: Protein quantification value calculated as median of peptide...
Definition: cv.hpp:6492
UNIMOD_LG_lactam_R
LG-lactam-R: Levuglandinyl - arginine lactam adduct.
Definition: cv.hpp:8808
UO_millimeter
millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
Definition: cv.hpp:10872
MS_Daly
Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier...
Definition: cv.hpp:492
UNIMOD_Gln__Lys
Gln->Lys: Gln->Lys substitution.
Definition: cv.hpp:9135
MS_frag__z_1_ion
frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
Definition: cv.hpp:4350
UNIMOD_DTT_C_2H_6_
DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines. ...
Definition: cv.hpp:9405
MS_MS_GF_PEP
MS-GF:PEP: MS-GF posterior error probability.
Definition: cv.hpp:6459
MS_TOPP_SpectraFilterParentPeakMower
TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra...
Definition: cv.hpp:6714
MS_order
order: The order of modifications to be referenced elsewhere in the document.
Definition: cv.hpp:7803
UO_spatial_resolution_unit
spatial resolution unit: An image resolution unit which is a standard measure of the way luminance an...
Definition: cv.hpp:11535
MS_data_filtering
data filtering: Filtering out part of the data.
Definition: cv.hpp:4704
MS_inductive_detector
inductive detector: Inductive detector.
Definition: cv.hpp:2385
UNIMOD_Ala__His
Ala->His: Ala->His substitution.
Definition: cv.hpp:9891
MS_percent_of_base_peak
percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percen...
Definition: cv.hpp:582
UO_unit_of_molality
unit of molality: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:11025
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact p...
Definition: cv.hpp:5139
UNIMOD_Glu__pyro_Glu
Glu->pyro-Glu: Pyro-glu from E.
Definition: cv.hpp:7914
MS_Tranche_file_hash
Tranche file hash: Hash assigned by the Tranche resource to an individual file.
Definition: cv.hpp:6042
UNIMOD_Gly__Thr
Gly->Thr: Gly->Thr substitution.
Definition: cv.hpp:10086
UO_microeinstein_per_square_meter_per_second
microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per...
Definition: cv.hpp:11298
MS_mattauch_herzog_geometry_OBSOLETE
mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflectio...
Definition: cv.hpp:1293
MS_PIA_protein_score
PIA:protein score: The score given to a protein by any protein inference.
Definition: cv.hpp:7473
std::vector< CVID > id_list
Definition: cv.hpp:11717
MS_parent_mass_type_mono
parent mass type mono: Mass type setting for parent mass was monoisotopic.
Definition: cv.hpp:3909
MS_SEQUEST_matched_ions
SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
Definition: cv.hpp:3789
UNIMOD_Asp__Val
Asp->Val: Asp->Val substitution.
Definition: cv.hpp:8943
MS_ProteinLynx_Global_Server
ProteinLynx Global Server: Waters software for data analysis.
Definition: cv.hpp:2310
UNIMOD_Dipyridyl
Dipyridyl: Cys modified with dipy ligand.
Definition: cv.hpp:10557
UNIMOD_Carboxymethyl_13C_2_
Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
Definition: cv.hpp:9432
MS_lab_head
lab head: The scientist responsible for personnel, grants, and instrumentation in a functional labora...
Definition: cv.hpp:7287
UO_turns_per_second
turns per second: A rotational frequency unit which is equal to the number complete turn in a period ...
Definition: cv.hpp:11100
MS_CLINPROT
CLINPROT: Bruker CLINPROT software.
Definition: cv.hpp:2640
MS_Paragon__quantitation
Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is cond...
Definition: cv.hpp:7575
MS_4700_Explorer
4700 Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2064
MS_massWolf
massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was origin...
Definition: cv.hpp:2067
MS_database_version_OBSOLETE
database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database...
Definition: cv.hpp:3393
MS_TOPP_NoiseFilterSGolay
TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing...
Definition: cv.hpp:6687
MS_Agilent_MassHunter_format
Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains...
Definition: cv.hpp:4773
MS_TOPP_software_adaptor
TOPP software adaptor: Software adaptor to an external program in the TOPP software.
Definition: cv.hpp:6828
UO_radian_per_second
radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minu...
Definition: cv.hpp:11061
UNIMOD_DiART6plex117
DiART6plex117: Accurate mass for DiART6plex 117.
Definition: cv.hpp:10797
MS_electrospray_supply_type
electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
Definition: cv.hpp:6084
MS_compact
compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7128
MS_____W_
(?<=W): Regular expression for 2-iodobenzoate.
Definition: cv.hpp:6144
MS_binomial_smoothing
binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-d...
Definition: cv.hpp:2874
MS_sustained_off_resonance_irradiation
sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron reso...
Definition: cv.hpp:1236
MS_API_5000
API 5000: AB SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
Definition: cv.hpp:2481
UNIMOD_Val__Ser
Val->Ser: Val->Ser substitution.
Definition: cv.hpp:10410
MS_mass_resolving_power
mass resolving power: The observed mass divided by the difference between two masses that can be sepa...
Definition: cv.hpp:2934
MS_MassHunter_Data_Acquisition
MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
Definition: cv.hpp:2550
UO_mass_per_unit_volume
mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in ...
Definition: cv.hpp:11358
MS_source_sprayer
source sprayer: The source sprayer.
Definition: cv.hpp:6060
MS_magnetic_sector
magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam tha...
Definition: cv.hpp:378
MS_distinct_peptide_level_e_value
distinct peptide-level e-value: Estimation of the e-value for distinct peptides once redundant identi...
Definition: cv.hpp:5871
MS_normalized_protein_value
normalized protein value: Normalized protein value.
Definition: cv.hpp:5811
MS_SEQUEST_Consensus
SEQUEST:Consensus: Specify depth as value of the CVParam.
Definition: cv.hpp:3453
MS_cluster_identifier
cluster identifier: An identifier applied to protein groups to indicate that they are linked by share...
Definition: cv.hpp:7512
MS_LIFT
LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy...
Definition: cv.hpp:6273
MS_selected_ion_monitoring
selected ion monitoring: The operation of a mass spectrometer in which the intensities of several spe...
Definition: cv.hpp:822
MS_EE
EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state...
Definition: cv.hpp:1050
MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score
ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that eac...
Definition: cv.hpp:5235
UNIMOD_IMEHex_2_NeuAc
IMEHex(2)NeuAc: Glycosylation with IME linked Hex(2) NeuAc.
Definition: cv.hpp:10575
MS_chromatograph_file_format
chromatograph file format: The format of the chromatography file being used. This could be a instrume...
Definition: cv.hpp:7617
MS_Phenyx_XML_format
Phenyx XML format: Phenyx open XML file format.
Definition: cv.hpp:4629
MS_Mascot_ProteinScoringMethod
Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
Definition: cv.hpp:4206
UNIMOD_Biotin_Thermo_21911
Biotin:Thermo-21911: Biotin-PEG11-maleimide.
Definition: cv.hpp:10680
MS_cross_link_receiver
cross-link receiver: Cross-linking receiver, assigned according to the following rules: the export so...
Definition: cv.hpp:7821
MS_Phenyx_Modif
Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptid...
Definition: cv.hpp:4443
UNIMOD_Met__Ala
Met->Ala: Met->Ala substitution.
Definition: cv.hpp:10176
MS_OMSSA_input_parameter
OMSSA input parameter: Search engine input parameters specific to OMSSA.
Definition: cv.hpp:6588
UNIMOD_Arg__Gly
Arg->Gly: Arg->Gly substitution.
Definition: cv.hpp:9180
UNIMOD_Xle__Pro
Xle->Pro: Leu/Ile->Pro substitution.
Definition: cv.hpp:9057
MS_IsoPrime
IsoPrime: Waters IsoPrime MS.
Definition: cv.hpp:699
UO_kilowatt_hour
kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
Definition: cv.hpp:11490
MS_constant_neutral_mass_gain_spectrum
constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1389
MS_empirical_formula
empirical formula: A chemical formula which expresses the proportions of the elements present in a su...
Definition: cv.hpp:3144
MS_accelerator_mass_spectrometry
accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample a...
Definition: cv.hpp:969
UNIMOD_Chlorination
Chlorination: Chlorination of tyrosine residues.
Definition: cv.hpp:9639
UNIMOD_Thr__His
Thr->His: Thr->His substitution.
Definition: cv.hpp:10374
MS_unlabeled_sample
unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "ligh...
Definition: cv.hpp:6399
MS_SEQUEST_sprank
SEQUEST:sprank: The SEQUEST result 'SpRank'.
Definition: cv.hpp:7035
MS_ProteomeDiscoverer_Number_of_input4_spectra
ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
Definition: cv.hpp:5448
UNIMOD_Asn__Thr
Asn->Thr: Asn->Thr substitution.
Definition: cv.hpp:9093
UNIMOD_Cys__Ser
Cys->Ser: Cys->Ser substitution.
Definition: cv.hpp:8910
MS_translation_frame
translation frame: The translated open reading frames from a nucleotide database considered in the se...
Definition: cv.hpp:3417
UNIMOD_Label_13C_6_15N_2_
Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
Definition: cv.hpp:8295
MS_small_molecule_attribute
small molecule attribute: Attribute describing a small molecule.
Definition: cv.hpp:6642
UNIMOD_Hex_3_HexNAc_2_P_1_
Hex(3)HexNAc(2)P(1): Hex3HexNAc2P1.
Definition: cv.hpp:8190
UO_parts_per_hundred
parts per hundred: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:11319
UNIMOD_Methylamine
Methylamine: Michael addition with methylamine.
Definition: cv.hpp:8460
MS_alternate_single_letter_codes
alternate single letter codes: List of standard residue one letter codes which are used to replace a ...
Definition: cv.hpp:4329
MS_number_of_peaks_submitted
number of peaks submitted: The number of peaks from the original peaks listed that were submitted to ...
Definition: cv.hpp:3678
MS_mass_spectrograph_obsolete_OBSOLETE
mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-ch...
Definition: cv.hpp:1284
UNIMOD_benzylguanidine
benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favo...
Definition: cv.hpp:10701
UNIMOD_LG_anhydrolactam
LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
Definition: cv.hpp:9666
MS_PEAKS_Node
PEAKS Node: PEAKS Node software for high throughput data analysis.
Definition: cv.hpp:6108
MS_modification_localization_scoring
modification localization scoring: Modification localization scoring performed.
Definition: cv.hpp:7764
MS_distinct_peptide_level_p_value
distinct peptide-level p-value: Estimation of the p-value for distinct peptides once redundant identi...
Definition: cv.hpp:5865
MS_TruTOF
TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
Definition: cv.hpp:5667
UNIMOD_Ala__Ser
Ala->Ser: Ala->Ser substitution.
Definition: cv.hpp:8886
MS_spectrum
spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical ...
Definition: cv.hpp:1755
MS_direct_inlet
direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable p...
Definition: cv.hpp:285
UO_kilogram_meter_per_second
kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass obje...
Definition: cv.hpp:11097
MS_PSM_is_used_for_peptide_level_scoring
PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring...
Definition: cv.hpp:7800
MS_protein_level_PSM_counts
protein level PSM counts: The number of spectra identified for this protein in spectral counting...
Definition: cv.hpp:6747
MS_sprayed_MALDI_matrix_preparation
sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
Definition: cv.hpp:3057
MS_frag__a_ion___H2O
frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
Definition: cv.hpp:3981
UNIMOD_Lys__His
Lys->His: Lys->His substitution.
Definition: cv.hpp:10158
MS_isolation_window_lower_limit_OBSOLETE
isolation window lower limit: The lowest m/z being isolated in an isolation window.
Definition: cv.hpp:2916
MS_TOPP_IDMerger
TOPP IDMerger: Merges several protein/peptide identification files into one file. ...
Definition: cv.hpp:6753
MS_APCI
APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric ...
Definition: cv.hpp:330
MS_time_unit_OBSOLETE
time unit: Time Unit.
Definition: cv.hpp:2106
MS_retention_time_alignment
retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free prote...
Definition: cv.hpp:2751
MS_spectrum_identifier_nativeID_format
spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
Definition: cv.hpp:2850
MS_MS_Amanda_csv_format
MS Amanda csv format: MS Amanda csv output format.
Definition: cv.hpp:7668
MS_____DE__
(?=[DE]): Regular expression for Asp-N-ambic.
Definition: cv.hpp:4089
MS_FT_ICR
FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on th...
Definition: cv.hpp:375
UNIMOD_Ser__Xle
Ser->Xle: Ser->Leu/Ile substitution.
Definition: cv.hpp:9210
MS_stable_ion
stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate pri...
Definition: cv.hpp:1554
MS_ProteinExtractor_MinNumberOfPeptides
ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider. ...
Definition: cv.hpp:4527
UO_radiation_unit
radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radi...
Definition: cv.hpp:11202
UNIMOD_NA_OA_NO2
NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
Definition: cv.hpp:9300
UNIMOD_Succinyl
Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
Definition: cv.hpp:8013
MS_kinetic_energy_analyzer
kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retar...
Definition: cv.hpp:1341
MS_scan_mode_OBSOLETE
scan mode: OBSOLETE.
Definition: cv.hpp:210
UNIMOD_GPIanchor
GPIanchor: Glycosylphosphatidylinositol.
Definition: cv.hpp:8589
MS_internal_protein_reference_used
internal protein reference used: States whether an internal protein reference is used or not in absol...
Definition: cv.hpp:7839
MS_spectrum_from_ProteinScape_database_nativeID_format
spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
Definition: cv.hpp:4839
MS_product_ion
product ion: An ion formed as the product of a reaction involving a particular precursor ion...
Definition: cv.hpp:1443
UO_nanomole
nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol...
Definition: cv.hpp:10947
MS_PEAKS_inChorusPeptideScore
PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
Definition: cv.hpp:7635
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5391
MS_Comet_matched_ions
Comet:matched ions: The Comet result 'Matched Ions'.
Definition: cv.hpp:7062
UNIMOD_CLIP_TRAQ_3
CLIP_TRAQ_3: CLIP_TRAQ_3.
Definition: cv.hpp:8874
MS_number_of_peptide_seqs_compared_to_each_spectrum
number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum...
Definition: cv.hpp:3435
MS_multiple_reaction_monitoring_OBSOLETE
multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring...
Definition: cv.hpp:450
UNIMOD_HPG
HPG: Hydroxyphenylglyoxal arginine.
Definition: cv.hpp:8217
MS_kinetic_energy_release_distribution
kinetic energy release distribution: Distribution of values of translational kinetic energy release f...
Definition: cv.hpp:1131
MS_ChromaTOF_software
ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments...
Definition: cv.hpp:5652
MS_highest_observed_m_z
highest observed m/z: Highest m/z value observed in the m/z array.
Definition: cv.hpp:2034
MS_Phenyx_MinPepzscore
Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identific...
Definition: cv.hpp:4401
MS_apex_IV
apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR. ...
Definition: cv.hpp:630
MS_no_special_processing
no special processing: No special processing performed.
Definition: cv.hpp:7776
MS_SpectrumMill_directories
SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format...
Definition: cv.hpp:4941
MS_software_vendor
software vendor: Software vendor role.
Definition: cv.hpp:4068
MS_source_interface_model
source interface model: The source interface model.
Definition: cv.hpp:6057
MS_detector
detector: The device that detects ions.
Definition: cv.hpp:1797
MS_FAIMS_CV
FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS t...
Definition: cv.hpp:4986
MS_sample_name_OBSOLETE
sample name: A reference string relevant to the sample under study.
Definition: cv.hpp:105
UNIMOD_Ethylphosphate
Ethylphosphate: O-Ethylphosphorylation.
Definition: cv.hpp:9333
MS_OMSSA_csv_format
OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
Definition: cv.hpp:4446
MS_ISQ
ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
Definition: cv.hpp:5979
UO_nanosecond
nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s...
Definition: cv.hpp:11268
MS_ions_series_considered_in_search
ions series considered in search: The description of the DEPRECATED ion fragment series (including ch...
Definition: cv.hpp:3522
UNIMOD_Butyryl
Butyryl: Butyryl.
Definition: cv.hpp:10584
UNIMOD_Asn__Glu
Asn->Glu: Asn->Glu substitution.
Definition: cv.hpp:10221
UNIMOD_TMT
TMT: Native Tandem Mass Tag®.
Definition: cv.hpp:9366
UNIMOD_Glu__Asp
Glu->Asp: Glu->Asp substitution.
Definition: cv.hpp:8952
MS_SEQUEST
SEQUEST: The name of the SEQUEST search engine.
Definition: cv.hpp:3900
MS_absorption_chromatogram
absorption chromatogram: The measurement of light absorbed by the sample as a function of the retenti...
Definition: cv.hpp:2982
MS_SEQUEST_sort_by_z
SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
Definition: cv.hpp:3588
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from differen...
Definition: cv.hpp:5145
UNIMOD_NHS_LC_Biotin
NHS-LC-Biotin: NHS-LC-Biotin.
Definition: cv.hpp:8031
UO_counts_per_minute
counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissio...
Definition: cv.hpp:11265
MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL
ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server...
Definition: cv.hpp:5202
MS_Bruker_BAF_format
Bruker BAF format: Bruker BAF raw file format.
Definition: cv.hpp:2991
MS_source
source: Terms to describe the source.
Definition: cv.hpp:1815
MS_frag__w_ion
frag: w ion: Fragmentation information, type of product: w ion.
Definition: cv.hpp:3993
MS_database_local_file_path_OBSOLETE
database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search...
Definition: cv.hpp:3387
UNIMOD_Pro__Lys
Pro->Lys: Pro->Lys substitution.
Definition: cv.hpp:10263
UNIMOD_Glu__Asn
Glu->Asn: Glu->Asn substitution.
Definition: cv.hpp:10002
UNIMOD_Asp__Tyr
Asp->Tyr: Asp->Tyr substitution.
Definition: cv.hpp:8937
MS_first_stability_region
first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
Definition: cv.hpp:1335
MS_contact_affiliation
contact affiliation: Home institution of the contact person.
Definition: cv.hpp:2268
UO_catalytic_activity_unit
catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst...
Definition: cv.hpp:11181
MS_API_4000
API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
Definition: cv.hpp:648
UNIMOD_Oxidation_NEM
Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
Definition: cv.hpp:10782
MS_metabolic_labeling_14N___15N_quantitation_analysis
metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light vers...
Definition: cv.hpp:5772
MS_X_Tandem_expect
X!Tandem:expect: The X!Tandem expectation value.
Definition: cv.hpp:4239
MS_target_SRM_transition
target SRM transition: A transition used to target a specific compound that may be in the sample...
Definition: cv.hpp:6297
MS_ProCon
ProCon: Java software designed to convert one of several proteomics identification results formats in...
Definition: cv.hpp:7293
UNIMOD_Label_2H_9_13C_6_15N_2_
Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
Definition: cv.hpp:9309
UNIMOD_PET
PET: Phosphorylation to pyridyl thiol.
Definition: cv.hpp:8307
MS_ProteinScape_ProfoundProbability
ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
Definition: cv.hpp:4737
UO_pi
pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3...
Definition: cv.hpp:11382
UO_micrometer
micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
Definition: cv.hpp:10875
MS_Xevo_TQD
Xevo TQD: Waters quadrupole based Xevo TQD.
Definition: cv.hpp:5628
UNIMOD_Asp__Arg
Asp->Arg: Asp->Arg substitution.
Definition: cv.hpp:9975
UNIMOD_Pro__Gly
Pro->Gly: Pro->Gly substitution.
Definition: cv.hpp:10260
MS_SpectraST
SpectraST: SpectraST was used to analyze the spectra.
Definition: cv.hpp:4677
MS_ProteomeDiscoverer_Static_Modifications
ProteomeDiscoverer:Static Modifications: Static Modification to all occurrences of a named amino acid...
Definition: cv.hpp:5190
MS_emission_chromatogram
emission chromatogram: The measurement of light emitted by the sample as a function of the retention ...
Definition: cv.hpp:2985
MS_Voyager_DE_PRO
Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
Definition: cv.hpp:816
MS_peptide_level_statistical_threshold
peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
Definition: cv.hpp:7743
UNIMOD_CresylSaligeninPhosphate
CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
Definition: cv.hpp:10518
MS_vacuum_drying_MALDI_sample_preparation
vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method...
Definition: cv.hpp:6231
UNIMOD_UgiJoullie
UgiJoullie: Side reaction of HisTag.
Definition: cv.hpp:10554
MS_combined_pmf___ms_ms_search
combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS/MS ...
Definition: cv.hpp:4995
MS_pulsed_q_dissociation
pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
Definition: cv.hpp:2301
MS_PSM_level_p_value
PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
Definition: cv.hpp:7347
MS_beam_type_collision_induced_dissociation
beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a b...
Definition: cv.hpp:1686
UNIMOD_Biotin_Thermo_21345
Biotin:Thermo-21345: Was PentylamineBiotin.
Definition: cv.hpp:9447
UNIMOD_Trp__Gly
Trp->Gly: Trp->Gly substitution.
Definition: cv.hpp:9270
UNIMOD_BDMAPP
BDMAPP: Mass Defect Tag on lysine e-amino.
Definition: cv.hpp:9294
MS_spark_ionization
spark ionization: The formation of ions from a solid material by an intermittent electrical discharge...
Definition: cv.hpp:1632
MS_spectral_count_proteingroup_level_quantitation
spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation...
Definition: cv.hpp:6336
MS_instrument_vendor
instrument vendor: Instrument vendor role.
Definition: cv.hpp:4074
UNIMOD_AEBS
AEBS: Aminoethylbenzenesulfonylation.
Definition: cv.hpp:8334
UNIMOD_Ub_Br2
Ub-Br2: Ub Bromide probe addition.
Definition: cv.hpp:10521
UNIMOD_Ser__Met
Ser->Met: Ser->Met substitution.
Definition: cv.hpp:10350
MS_mzidLib
mzidLib: A library of Java routines for manipulating mzIdentML files.
Definition: cv.hpp:6999
UO_centimeter
centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
Definition: cv.hpp:10869
MS_ProteinExtractor_GenerateNonRedundant
ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated...
Definition: cv.hpp:4515
UNIMOD_Label_2H_7_15N_4_
Label:2H(7)15N(4): Label:2H(7)15N(4).
Definition: cv.hpp:10818
MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE
ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
Definition: cv.hpp:5217
MS_frag__immonium_ion
frag: immonium ion: Fragmentation information, type of product: immonium ion.
Definition: cv.hpp:3996
MS_particle_beam
particle beam: Method for generating ions from a solution of an analyte.
Definition: cv.hpp:315
MS_distonic_ion
distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin canno...
Definition: cv.hpp:1506
MS_frag__b_ion
frag: b ion: Fragmentation information, type of product: b ion.
Definition: cv.hpp:3945
MS_final_PSM_list_UNDER_DISCUSSION
final PSM list UNDER DISCUSSION: A flag on a list of PSMs (SpectrumIdentificationList) to indicate th...
Definition: cv.hpp:7608
MS_TOPP_SpectraMerger
TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks...
Definition: cv.hpp:6759
UNIMOD_sulfo_amino
sulfo+amino: Aminotyrosine with sulfation.
Definition: cv.hpp:9771
UNIMOD_Lys__Trp
Lys->Trp: Lys->Trp substitution.
Definition: cv.hpp:10170
UNIMOD_Xle__Val
Xle->Val: Leu/Ile->Val substitution.
Definition: cv.hpp:9060
MS_MS2_format
MS2 format: MS2 file format for MS/MS spectral data.
Definition: cv.hpp:4635
UO_day
day: A time unit which is equal to 24 hours.
Definition: cv.hpp:10923
UNIMOD_Biotin_PEO_Amine
Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
Definition: cv.hpp:8358
MS_6520_Quadrupole_Time_of_Flight_LC_MS
6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2547
MS_FAB
FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused...
Definition: cv.hpp:354
MS_fast_atom_bombardment_ionization
fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam ...
Definition: cv.hpp:351
UNIMOD_Ser__Pro
Ser->Pro: Ser->Pro substitution.
Definition: cv.hpp:9198
UNIMOD_Cys__Lys
Cys->Lys: Cys->Lys substitution.
Definition: cv.hpp:9933
MS_Unify
Unify: Waters Unify software for liquid chromatography and mass spectrometry acquisition.
Definition: cv.hpp:5640
UO_femtoliter
femtoliter: A volume unit which is equal to 10^[-15] L.
Definition: cv.hpp:11136
MS_AB_SCIEX_TOF_TOF_database
AB SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database...
Definition: cv.hpp:4689
MS_CXP
CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole in...
Definition: cv.hpp:6096
MS_TOPP_MassTraceExtractor
TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
Definition: cv.hpp:6765
MS_PRIDE_Converter2
PRIDE Converter2: Java software designed to convert one of several proteomics identification results ...
Definition: cv.hpp:7296
MS_raw_data_file
raw data file: Describes the type of file and its content.
Definition: cv.hpp:2187
MS_PeptideShaker_PSM_confidence
PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence. ...
Definition: cv.hpp:7692
UNIMOD_Acetyl_13C_2_
Acetyl:13C(2): Heavy acetylation.
Definition: cv.hpp:10737
MS_no_threshold
no threshold: In case no threshold was used.
Definition: cv.hpp:4728
MS_METLIN
METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human...
Definition: cv.hpp:2574
MS_PSM_FDR_threshold
PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
Definition: cv.hpp:7068
UO_rotational_frequency_unit
rotational frequency unit: A unit which is a standard measure of the number of rotations in a given t...
Definition: cv.hpp:10998
UNIMOD_Phosphopantetheine
Phosphopantetheine: Phosphopantetheine.
Definition: cv.hpp:7971
MS_sampling_frequency
sampling frequency: The rate of signal sampling (measurement) with respect to time.
Definition: cv.hpp:189
UNIMOD_Carboxy
Carboxy: Carboxylation.
Definition: cv.hpp:8382
UNIMOD_Label_13C_6_15N_4_
Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
Definition: cv.hpp:8310
MS_Waters_nativeID_format
Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegative...
Definition: cv.hpp:2826
MS_binary_data_compression_type
binary data compression type: Compression Type.
Definition: cv.hpp:2172
MS_ion_role
ion role: Ion Role.
Definition: cv.hpp:1971
MS_analysis_software
analysis software: Analysis software.
Definition: cv.hpp:4608
UNIMOD_Asp__Met
Asp->Met: Asp->Met substitution.
Definition: cv.hpp:9966
MS_Laser_Desorption_OBSOLETE
Laser Desorption: The formation of ions through the interaction of a laser with a material or with ga...
Definition: cv.hpp:1137
UNIMOD_Arg__Asp
Arg->Asp: Arg->Asp substitution.
Definition: cv.hpp:10320
UNIMOD_Carbamyl
Carbamyl: Carbamylation.
Definition: cv.hpp:7866
MS_X_Tandem
X!Tandem: X!Tandem was used to analyze the spectra.
Definition: cv.hpp:4674
UNIMOD_dNIC
dNIC: Deuterated Nicotinic Acid.
Definition: cv.hpp:9315
UNIMOD_Phycocyanobilin
Phycocyanobilin: Phycocyanobilin.
Definition: cv.hpp:8568
UNIMOD_NeuGc
NeuGc: N-glycoyl neuraminic acid.
Definition: cv.hpp:10623
UNIMOD_IBTP
IBTP: Thio Ether Formation - BTP Adduct.
Definition: cv.hpp:8079
MS_TOPP_ConsensusMapNormalizer
TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
Definition: cv.hpp:6804
MS_6420_Triple_Quadrupole_LC_MS
6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7623
MS_param__b_ion
param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side...
Definition: cv.hpp:3660
UNIMOD_Ser__Val
Ser->Val: Ser->Val substitution.
Definition: cv.hpp:10356
MS_MaxQuant_PTM_Delta_Score
MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highes...
Definition: cv.hpp:6219
MS_inclusive_low_intensity_threshold
inclusive low intensity threshold: Threshold at or below which some action is taken.
Definition: cv.hpp:2895
MS_Scaffold__Minimum_Peptide_Count
Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted...
Definition: cv.hpp:4965
MS_SEQUEST_Sum
SEQUEST:Sum:
Definition: cv.hpp:4371
UO_gram_per_liter
gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volum...
Definition: cv.hpp:11343
UNIMOD_GlyGly
GlyGly: Ubiquitinylation residue.
Definition: cv.hpp:8082
MS_Platform_ICP
Platform ICP: Waters Platform ICP MS.
Definition: cv.hpp:759
MS_sample_pre_fractionation
sample pre-fractionation: Sample pre-fractionation performed.
Definition: cv.hpp:7770
MS_modified_peptide_sequence
modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compos...
Definition: cv.hpp:3216
MS_Comet_xcorr
Comet:xcorr: The Comet result 'XCorr'.
Definition: cv.hpp:7044
MS_SEQUEST_PeptideIdnumber
SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
Definition: cv.hpp:3930
UNIMOD_Dicarbamidomethyl
Dicarbamidomethyl: Double Carbamidomethylation.
Definition: cv.hpp:10587
MS_SymBiot_I
SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
Definition: cv.hpp:789
MS_enhanced_resolution_scan
enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acqui...
Definition: cv.hpp:1944
MS_iProphet
iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines ...
Definition: cv.hpp:7155
MS_HiRes_ESI
HiRes ESI: IonSpec HiResESI MS.
Definition: cv.hpp:693
UO_cubic_meter_per_mole
cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a s...
Definition: cv.hpp:11091
UO_square_meter
square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter lon...
Definition: cv.hpp:11064
UNIMOD_Ammonia_loss
Ammonia-loss: Loss of ammonia.
Definition: cv.hpp:8565
UNIMOD_AHA_Alkyne_KDDDD
AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
Definition: cv.hpp:9780
MS_DB_source_UniProt
DB source UniProt: Database source UniProt.
Definition: cv.hpp:4035
UO_unit_per_liter
unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount p...
Definition: cv.hpp:11355
MS_quantification_datatype
quantification datatype: The data type of the value reported in a QuantLayer for a feature...
Definition: cv.hpp:5670
MS_frag__x_ion___NH3
frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
Definition: cv.hpp:4806
MS_SWIFT
SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ion...
Definition: cv.hpp:1251
MS_proportional_OBSOLETE
proportional: When resolution is proportional with respect to m/z.
Definition: cv.hpp:420
MS_product_ion_intensity_standard_deviation
product ion intensity standard deviation: Standard deviation of product ion intensity in a collection...
Definition: cv.hpp:6966
MS_mzidLib_CombineSearchEngines
mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three searc...
Definition: cv.hpp:7026
MS_protein_group_level_global_FDR
protein group-level global FDR: Estimation of the global false discovery rate of protein groups...
Definition: cv.hpp:7398
MS_software_input_parameter
software input parameter: Software input parameters.
Definition: cv.hpp:6597
MS_Phenyx_ID
Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
Definition: cv.hpp:4416
UNIMOD_Tripalmitate
Tripalmitate: N-acyl diglyceride cysteine.
Definition: cv.hpp:7977
MS_GC_IsoLink
GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
Definition: cv.hpp:2463
UNIMOD_Carboxyethyl
Carboxyethyl: Carboxyethyl.
Definition: cv.hpp:8550
UNIMOD_HexNAc_2_dHex_2_
HexNAc(2)dHex(2): HexNAc2dHex2.
Definition: cv.hpp:8157
UO_plaque_forming_unit
plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given vo...
Definition: cv.hpp:11451
MS_mzidLib_Tandem2Mzid
mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
Definition: cv.hpp:7005
MS_database_type
database type: Database containing amino acid or nucleic acid sequences.
Definition: cv.hpp:3399
MS_FlexControl
FlexControl: Bruker software for data acquisition.
Definition: cv.hpp:2076
MS_contact_URL
contact URL: Uniform Resource Locator related to the contact person or organization.
Definition: cv.hpp:2262
MS_total_ion_current
total ion current: The sum of all the separate ion currents carried by the ions of different m/z cont...
Definition: cv.hpp:1254
MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion
ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the give...
Definition: cv.hpp:5151
MS_precursor_ion_detection_probability
precursor ion detection probability: Probability of detecting precursor when parent protein is presen...
Definition: cv.hpp:6957
UNIMOD_Delta_H_2_C_5_
Delta:H(2)C(5): MDA adduct +62.
Definition: cv.hpp:8424
UNIMOD_ICAT_G
ICAT-G: Gygi ICAT(TM) d0.
Definition: cv.hpp:7875
MS_decoy_DB_from_IPI_chicken_OBSOLETE
decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gall...
Definition: cv.hpp:4143
MS_below_precursor_intensity_dominance_charge_state_calculation
below precursor intensity dominance charge state calculation: Infers charge state as single or ambigu...
Definition: cv.hpp:2856
MS_PeptideShaker_protein_group_confidence
PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence...
Definition: cv.hpp:7704
MS_date___time_search_performed_OBSOLETE
date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actu...
Definition: cv.hpp:3444
MS_TOPP_SpectraFilterSqrtMower
TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square r...
Definition: cv.hpp:6720
MS_Mascot_Distiller
Mascot Distiller: Mascot Distiller.
Definition: cv.hpp:4710
MS_ProteinExtractor
ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinSca...
Definition: cv.hpp:4707
UNIMOD_glucosone
glucosone: Condensation product of glucosone.
Definition: cv.hpp:9738
MS_magnetic_field_strength
magnetic field strength: A property of space that produces a force on a charged particle equal to qv ...
Definition: cv.hpp:174
MS_ProteomeDiscoverer_2__Static_Modification
ProteomeDiscoverer:2. Static Modification: Determine 2nd static post-translational modifications (PTM...
Definition: cv.hpp:6528
MS_gas_chromatography_separation
gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile ...
Definition: cv.hpp:7104
MS_linked_scan_OBSOLETE
linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer ...
Definition: cv.hpp:1404
MS_database_UniProtKB_TrEMBL
database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
Definition: cv.hpp:6471
MS_embl_em
embl em: EMBL entry format.
Definition: cv.hpp:4305
MS_retention_time_window_upper_offset
retention time window upper offset: The extent of the retention time window in time units above the t...
Definition: cv.hpp:3306
MS_constant_neutral_gain_scan_OBSOLETE
constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment...
Definition: cv.hpp:1380
UO_millisecond
millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
Definition: cv.hpp:10908
UNIMOD_Arg__Phe
Arg->Phe: Arg->Phe substitution.
Definition: cv.hpp:10335
MS_MS_MS_in_Space
MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z an...
Definition: cv.hpp:1422
UNIMOD_Gly__Tyr
Gly->Tyr: Gly->Tyr substitution.
Definition: cv.hpp:10089
MS_esquireControl
esquireControl: Bruker software for data acquisition.
Definition: cv.hpp:2679
UO_milligram_per_liter
milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by...
Definition: cv.hpp:11637
MS_KERD
KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy re...
Definition: cv.hpp:1134
MS_mzidLib_InsertMetaDataFromFasta
mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequen...
Definition: cv.hpp:7029
MS_retention_time_normalization_standard
retention time normalization standard: A standard providing the retention times at which a set of ref...
Definition: cv.hpp:3255
MS_ProteinProspector_expectation_value
ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
Definition: cv.hpp:6423
MS_spin_coating_MALDI_sample_preparation
spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
Definition: cv.hpp:6246
UNIMOD_GIST_Quat
GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
Definition: cv.hpp:8001
UNIMOD_Ala__Val
Ala->Val: Ala->Val substitution.
Definition: cv.hpp:8904
UNIMOD_Ser__Ala
Ser->Ala: Ser->Ala substitution.
Definition: cv.hpp:9186
UNIMOD_His__Glu
His->Glu: His->Glu substitution.
Definition: cv.hpp:10098
MS_Comet_total_ions
Comet:total ions: The Comet result 'Total Ions'.
Definition: cv.hpp:7065
MS_TOPP_SpectraFilterThresholdMower
TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra...
Definition: cv.hpp:6723
MS_ultrafleXtreme
ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
Definition: cv.hpp:4878
MS_Sequence_database_filter_types
Sequence database filter types: Filter types which are used to filter a sequence database.
Definition: cv.hpp:4779
MS_ProteomeDiscoverer_max_peptide_length
ProteomeDiscoverer:max peptide length: Maximum peptide length.
Definition: cv.hpp:7260
MS_Mascot_UseUnigeneClustering
Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and...
Definition: cv.hpp:4221
MS_Byonic
Byonic: Byonic search engine from Protein Metrics.
Definition: cv.hpp:7071
MS_Skyline
Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of...
Definition: cv.hpp:3321
MS_param__b_ion_NH3_DEPRECATED
param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammoni...
Definition: cv.hpp:3753
UNIMOD_QQQTGG
QQQTGG: SUMOylation by SUMO-2/3.
Definition: cv.hpp:9525
MS_OMEGA
OMEGA: IonSpec OMEGA MS.
Definition: cv.hpp:750
MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions
ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching...
Definition: cv.hpp:5490
MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions
ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for ...
Definition: cv.hpp:5310
MS_PerSeptive_PKS_format
PerSeptive PKS format: PerSeptive peak list file format.
Definition: cv.hpp:4011
UNIMOD_Label_13C_5_
Label:13C(5): 13C(5) Silac label.
Definition: cv.hpp:9423
MS_Profound_ClusterRank
Profound:ClusterRank: The Profound cluster rank.
Definition: cv.hpp:4746
MS_CLINPROT_micro
CLINPROT micro: Bruker CLINPROT micro software.
Definition: cv.hpp:2643
UO_kibibyte
kibibyte: An information unit which is equal to 1024 B.
Definition: cv.hpp:11553
MS_counts_per_second
counts per second: The number of counted events observed per second in one or a group of elements of ...
Definition: cv.hpp:2988
UO_poise
poise: A viscosity unit which is equal to one dyne second per square centimeter.
Definition: cv.hpp:11592
MS_MS1_label_based_analysis
MS1 label-based analysis: MS1 label-based analysis.
Definition: cv.hpp:6339
MS_MS1_feature_maximum_intensity
MS1 feature maximum intensity: Maximum intensity of MS1 feature.
Definition: cv.hpp:5784
UO_power_unit
power unit: A unit which is a standard measure power or the rate of doing work.
Definition: cv.hpp:11163
MS_hybrid_mass_spectrometer
hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perfo...
Definition: cv.hpp:1278
MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions
ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative fac...
Definition: cv.hpp:5340
UO_volt_hour
volt-hour: A magnetic flux unit which is equal to 3600 Wb.
Definition: cv.hpp:11505
MS______KR_____P_
(?<=[KR])(?!P): Regular expression for Trypsin.
Definition: cv.hpp:3834
MS_ACQUITY_UPLC_I_Class
ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
Definition: cv.hpp:5547
MS_mzML_format
mzML format: Proteomics Standards Inititative mzML file format.
Definition: cv.hpp:2250
UNIMOD_Gly
Gly: Addition of Glycine.
Definition: cv.hpp:10536
MS_sophisticated_numerical_annotation_procedure
sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum...
Definition: cv.hpp:6264
MS_area_normalization
area normalization: Normalization of areas below the curves.
Definition: cv.hpp:6270
MS_ion_series_considered_in_search
ion series considered in search: The description of the ion fragment series (including charges and ne...
Definition: cv.hpp:7710
MS_ion_chemical_type
ion chemical type: Ion Type.
Definition: cv.hpp:1977
MS_search_engine_specific_score_for_PSMs
search engine specific score for PSMs: Search engine specific peptide spectrum match scores...
Definition: cv.hpp:3735
UO_curie
curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioacti...
Definition: cv.hpp:11220
UNIMOD_Label_13C_6__Acetyl
Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
Definition: cv.hpp:9477
MS_IKES
IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated acc...
Definition: cv.hpp:1104
MS_LTQ_XL
LTQ XL: Thermo Scientific LTQ XL MS.
Definition: cv.hpp:3105
UNIMOD_IGBP_13C_2_
IGBP:13C(2): Heavy IDBEST tag for quantitation.
Definition: cv.hpp:8793
UNIMOD_cysTMT
cysTMT: Native cysteine-reactive Tandem Mass Tag®.
Definition: cv.hpp:9741
MS_technical_replicate
technical replicate: The study variable is 'technical replicate'. The string value denotes the catego...
Definition: cv.hpp:5679
MS_OMSSA_pvalue
OMSSA:pvalue: OMSSA p-value.
Definition: cv.hpp:4236
MS_ion_desolvation
ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heatin...
Definition: cv.hpp:1590
UNIMOD_Dibromo
Dibromo: Dibromo.
Definition: cv.hpp:8868
UNIMOD_Trp__Xle
Trp->Xle: Trp->Leu/Ile substitution.
Definition: cv.hpp:9273
MS_ProteinExtractor_SequestPeptideScoreThreshold
ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold a...
Definition: cv.hpp:4548
MS_XPRESS
XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled...
Definition: cv.hpp:7161
UNIMOD_Lys__CamCys
Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
Definition: cv.hpp:9582
MS_gaseous_sample_state
gaseous sample state: State if the sample is in gaseous form.
Definition: cv.hpp:258
UNIMOD_EDT_maleimide_PEO_biotin
EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
Definition: cv.hpp:8034
MS_protein_group_level_global_FNR
protein group-level global FNR: Estimation of the global false negative rate of protein groups...
Definition: cv.hpp:7671
MS_Bruker_U2_nativeID_format
Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd...
Definition: cv.hpp:3015
MS_Trypsin
Trypsin: Enzyme trypsin.
Definition: cv.hpp:4026
MS_unimolecular_dissociation
unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one...
Definition: cv.hpp:1749
MS_fragment_ion_m_z
fragment ion m/z (product ion m/z): The m/z of the product ion.
Definition: cv.hpp:3951
UNIMOD_His__Asn
His->Asn: His->Asn substitution.
Definition: cv.hpp:8478
UNIMOD_Methylpyrroline
Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
Definition: cv.hpp:8694
MS_ProteoWizard_msconvert
ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats...
Definition: cv.hpp:6903
UNIMOD_Glu__Phe
Glu->Phe: Glu->Phe substitution.
Definition: cv.hpp:9990
MS_Channeltron_Detector
Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multipl...
Definition: cv.hpp:480
UNIMOD_Cys__Pro
Cys->Pro: Cys->Pro substitution.
Definition: cv.hpp:9942
UNIMOD_SulfanilicAcid_13C_6_
SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
Definition: cv.hpp:8352
UNIMOD_Hex_3_HexNAc_2_
Hex(3)HexNAc(2): Hex3HexNAc2.
Definition: cv.hpp:8184
MS_search_database_details
search database details: Details about the database searched.
Definition: cv.hpp:3378
MS_charge_transfer_reaction
charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the c...
Definition: cv.hpp:1671
MS_modulation_time
modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional se...
Definition: cv.hpp:6414
UNIMOD_Ser__Phe
Ser->Phe: Ser->Phe substitution.
Definition: cv.hpp:9183
UNIMOD_methylsulfonylethyl
methylsulfonylethyl: Reaction with methyl vinyl sulfone.
Definition: cv.hpp:10755
UO_milliliter
milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
Definition: cv.hpp:11118
MS_IdentityE_XML_format
IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
Definition: cv.hpp:4935
MS_attenuation
attenuation: Describes the reduction of the intensity of the laser beam energy.
Definition: cv.hpp:3087
UNIMOD_Met__Glu
Met->Glu: Met->Glu substitution.
Definition: cv.hpp:10185
UNIMOD_Dimethyl_2H_6_13C_2_
Dimethyl:2H(6)13C(2): Dimethylated arginine.
Definition: cv.hpp:8448
UNIMOD_GIST_Quat_2H_6_
GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
Definition: cv.hpp:8007
MS_database_IPI_rat
database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
Definition: cv.hpp:4107
MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset
ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge r...
Definition: cv.hpp:5121
MS_param__b_ion_H3PO4_DEPRECATED
param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
Definition: cv.hpp:7641
MS_false_localization_rate
false localization rate: Estimation of the false localization rate for modification site assignment...
Definition: cv.hpp:7431
MS_database_IPI_chicken
database IPI_chicken: International Protein Index database for Gallus gallus sequences.
Definition: cv.hpp:4113
UNIMOD_NO_SMX_SMCT
NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
Definition: cv.hpp:9381
UO_dots_per_inch
dots per inch: A spatial resolution unit which is a standard measure of the printing resolution...
Definition: cv.hpp:11538
MS_theoretical_mass
theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modificatio...
Definition: cv.hpp:3657
MS_ProteomeDiscoverer_Scan_Type_OBSOLETE
ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM)...
Definition: cv.hpp:5097
MS_SEQUEST_consensus_score
SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
Definition: cv.hpp:3795
MS_Clostripain
Clostripain (Arg-C): Endoproteinase Arg-C.
Definition: cv.hpp:4161
MS_PAnalyzer_ambiguous_group_member
PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclu...
Definition: cv.hpp:6936
MS_selected_ion_current_chromatogram
selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a...
Definition: cv.hpp:2397
MS_consecutive_reaction_monitoring_OBSOLETE_1000327
consecutive reaction monitoring: A type of MS/MS experiments with three or more stages of m/z separat...
Definition: cv.hpp:1398
UNIMOD_ICAT_C
ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
Definition: cv.hpp:8046
MS_Paragon__FDR_analysis
Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted...
Definition: cv.hpp:7572
MS_DeBunker
DeBunker: DeBunker software.
Definition: cv.hpp:6183
MS_mean_of_spectra
mean of spectra: Spectra is combined by calculating the mean of the spectra.
Definition: cv.hpp:2181
MS_Cliquid
Cliquid: AB SCIEX Cliquid software for data analysis and quantitation.
Definition: cv.hpp:2532
UNIMOD_Phe__Asn
Phe->Asn: Phe->Asn substitution.
Definition: cv.hpp:10044
MS_reference_ion
reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by...
Definition: cv.hpp:1551
UNIMOD_Asp__His
Asp->His: Asp->His substitution.
Definition: cv.hpp:8928
MS_TSQ_Quantiva
TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
Definition: cv.hpp:7545
MS_TOPP_CompNovo
TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
Definition: cv.hpp:6822
MS_constant_neutral_gain_spectrum
constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain...
Definition: cv.hpp:1386
UNIMOD_Dimethyl_2H_4_
Dimethyl:2H(4): DiMethyl-CHD2.
Definition: cv.hpp:8244
MS_TOPP_IDFilter
TOPP IDFilter: Filters results from protein or peptide identification engines based on different crit...
Definition: cv.hpp:6858
MS_ProteomeDiscoverer_Reference_Database_OBSOLETE
ProteomeDiscoverer:Reference Database: Full path database name.
Definition: cv.hpp:5460
UO_mebibyte
mebibyte: An information unit which is equal to 1024 KiB.
Definition: cv.hpp:11556
MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor
ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a ...
Definition: cv.hpp:5241
MS_nominal_mass
nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope o...
Definition: cv.hpp:933
MS_molecules_per_cell
molecules per cell: The absolute abundance of protein in a cell.
Definition: cv.hpp:7830
MS_PSM_level_statistical_threshold
PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
Definition: cv.hpp:7740
MS_Analyst
Analyst: AB SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
Definition: cv.hpp:2109
MS_ion_neutral_species_exchange_reaction
ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the...
Definition: cv.hpp:1713
UNIMOD_Tyr__Glu
Tyr->Glu: Tyr->Glu substitution.
Definition: cv.hpp:10464
MS_instrument_additional_description_OBSOLETE
instrument additional description: Additional terms to describe the instrument as outlined in the mas...
Definition: cv.hpp:1800
MS_Byonic_DeltaMod_Score
Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide diff...
Definition: cv.hpp:7080
MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps
two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chr...
Definition: cv.hpp:6555
MS_collision_gas
collision gas: An inert gas used for collisional excitation. The term target gas is not recommended...
Definition: cv.hpp:1677
MS_modification_position_score
modification position score: Modification position score.
Definition: cv.hpp:7809
MS_LCQ_Deca_XP_Plus
LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
Definition: cv.hpp:714
MS_param__immonium_ion
param: immonium ion: Parameter information, type of product: immonium ion.
Definition: cv.hpp:4050
UO_exposure_unit
exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radia...
Definition: cv.hpp:11214
MS_native_source_path
native source path: The original source path used for directory-based sources.
Definition: cv.hpp:6426
MS_quantification_object_attribute
quantification object attribute: Attributes describing the details of an object relevant for reportin...
Definition: cv.hpp:5673
UO_milliunits_per_milliliter
milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of a...
Definition: cv.hpp:11655
MS_Bruker_FID_nativeID_format
Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:2838
MS_ProteoWizard_software
ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by...
Definition: cv.hpp:2352
MS_Mascot_ProteinGrouping
Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of '...
Definition: cv.hpp:5532
MS_FileConverter
FileConverter: Converts between different MS file formats.
Definition: cv.hpp:2784
UNIMOD_Phe__Gly
Phe->Gly: Phe->Gly substitution.
Definition: cv.hpp:10032
UNIMOD_Met_loss_Acetyl
Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new...
Definition: cv.hpp:9411
MS_microelectrospray
microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is...
Definition: cv.hpp:1608
MS_TOPP_ProteinQuantifier
TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps...
Definition: cv.hpp:6801
UNIMOD_O_Dimethylphosphate
O-Dimethylphosphate: O-Dimethylphosphorylation.
Definition: cv.hpp:9324
UNIMOD_MTSL
MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL)...
Definition: cv.hpp:9603
UNIMOD_ICPL_2H_4_
ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
Definition: cv.hpp:9303
MS_group_member_with_undefined_relationship_OR_ortholog_protein
group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relations...
Definition: cv.hpp:5034
MS_percolator_PEP
percolator:PEP: Posterior error probability.
Definition: cv.hpp:4725
UNIMOD_Gly__Cys
Gly->Cys: Gly->Cys substitution.
Definition: cv.hpp:8997
UNIMOD_Argbiotinhydrazide
Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
Definition: cv.hpp:8469
MS_taxonomy_nomenclature_OBSOLETE
taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated ...
Definition: cv.hpp:3576
MS_ProteomeDiscoverer_2__Dynamic_Modification
ProteomeDiscoverer:2. Dynamic Modification: Determine 2nd dynamic post-translational modifications (P...
Definition: cv.hpp:5418
MS_search_statistics
search statistics: The details of the actual run of the search.
Definition: cv.hpp:3846
MS_quantitation_analysis_summary
quantitation analysis summary: The overall workflow of this quantitation report.
Definition: cv.hpp:5754
UNIMOD_Gly__Asn
Gly->Asn: Gly->Asn substitution.
Definition: cv.hpp:10077
MS_Phenyx_AC_Score
Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in t...
Definition: cv.hpp:4407
MS_Percolator_input_parameter
Percolator input parameter: Search engine input parameters specific to Percolator.
Definition: cv.hpp:6609
UNIMOD_PhosphoUridine
PhosphoUridine: Uridine phosphodiester.
Definition: cv.hpp:8649
MS_database_IPI_human
database IPI_human: International Protein Index database for Homo sapiens sequences.
Definition: cv.hpp:3732
UNIMOD_Met__Hsl
Met->Hsl: Homoserine lactone.
Definition: cv.hpp:7884
MS_mean_drift_time_array
mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time valu...
Definition: cv.hpp:7722
MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions
ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching...
Definition: cv.hpp:5508
UNIMOD_Asn__Gln
Asn->Gln: Asn->Gln substitution.
Definition: cv.hpp:10236
MS_MyriMatch_mzFidelity
MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental...
Definition: cv.hpp:5019
MS_constant_neutral_mass_loss_spectrum
constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1395
UNIMOD_Xlink_DSS
Xlink:DSS: Monolink of DSS/BS3 crosslinker to Lys or N-terminus.
Definition: cv.hpp:9828
MS_Pepitome
Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra. ...
Definition: cv.hpp:5007
MS_retention_time
retention time: A time interval from the start of chromatography when an analyte exits a chromatograp...
Definition: cv.hpp:3234
UNIMOD_Iodo
Iodo: Iodination.
Definition: cv.hpp:8103
MS_data_processing_software
data processing software: Data processing software.
Definition: cv.hpp:4611
MS_autodetachment
autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy gre...
Definition: cv.hpp:1569
UNIMOD_Furan
Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
Definition: cv.hpp:10560
UNIMOD_Hex_2_HexNAc_2_Pent_1_
Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
Definition: cv.hpp:8178
MS_highest_observed_wavelength
highest observed wavelength: Highest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2364
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr para...
Definition: cv.hpp:5388
MS_TOPP_SpectraFilterNormalizer
TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra...
Definition: cv.hpp:6711
UO_coulomb
coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of...
Definition: cv.hpp:11478
MS_OMSSA_evalue
OMSSA:evalue: OMSSA E-value.
Definition: cv.hpp:4233
UNIMOD_Trp__His
Trp->His: Trp->His substitution.
Definition: cv.hpp:10434
MS_Xevo_G2_S_QTof
Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
Definition: cv.hpp:7116
MS_IsoProbe_T
IsoProbe T: Waters IsoProbe T MS.
Definition: cv.hpp:705
MS_database_source
database source: The organisation, project or laboratory from where the database is obtained (UniProt...
Definition: cv.hpp:3381
UNIMOD_Ser__Tyr
Ser->Tyr: Ser->Tyr substitution.
Definition: cv.hpp:9201
UNIMOD_Glutathione
Glutathione: Glutathione disulfide.
Definition: cv.hpp:7989
MS_travelling_wave_ion_mobility_mass_spectrometer
travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on ...
Definition: cv.hpp:5643
MS_image_current_detector
image current detector (inductive detector): Inductive detector.
Definition: cv.hpp:2388
MS_soft_ionization
soft ionization: The formation of gas-phase ions without extensive fragmentation. ...
Definition: cv.hpp:1629
UO_pascal_second
pascal second: A viscosity unit which is equal to one pascale per second.
Definition: cv.hpp:11589
UO_molar_mass_unit
molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing...
Definition: cv.hpp:10989
MS_prot_FDR_threshold
prot:FDR threshold: False-discovery rate threshold for proteins.
Definition: cv.hpp:4581
UNIMOD_Arg__GluSA
Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
Definition: cv.hpp:8472
UO_cubic_meter_per_kilogram
cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by...
Definition: cv.hpp:11103
MS_source_temperature
source temperature: The temperature of the source of a mass spectrometer.
Definition: cv.hpp:6411
UNIMOD_N_dimethylphosphate
N-dimethylphosphate: N-dimethylphosphate.
Definition: cv.hpp:10722
UNIMOD_NEMsulfur
NEMsulfur: N-ethylmaleimideSulfur.
Definition: cv.hpp:10665
UNIMOD_Label_13C_5_15N_1_
Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
Definition: cv.hpp:8313
MS_non_standard_data_array
non-standard data array: A data array that contains data not covered by any other term in this group...
Definition: cv.hpp:2892
UNIMOD_dHex
dHex: Fucose.
Definition: cv.hpp:8376
MS_emPAI_value
emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
Definition: cv.hpp:5970
MS_ProteinProphet
ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM o...
Definition: cv.hpp:7158
MS_AP_MALDI
AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser de...
Definition: cv.hpp:978
MS_scan_start_time
scan start time: The time that an analyzer started a scan, relative to the start of the MS run...
Definition: cv.hpp:147
MS_ReAdW
ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML...
Definition: cv.hpp:2079
UNIMOD_Glu
Glu: Monoglutamyl.
Definition: cv.hpp:8733
MS_pepXML_format
pepXML format: Source file for this mzIdentML was in a pepXML file format.
Definition: cv.hpp:4503
UNIMOD_Diironsubcluster
Diironsubcluster: Hydrogenase diiron subcluster.
Definition: cv.hpp:8706
MS_cleavage_agent_name
cleavage agent name: The name of the cleavage agent.
Definition: cv.hpp:3468
UNIMOD_Octanoyl
Octanoyl: Octanoyl.
Definition: cv.hpp:8673
MS_total_XIC_area
total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e...
Definition: cv.hpp:7527
MS_nucleic_acid_base_modification
nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion)...
Definition: cv.hpp:6369
MS_Paragon__cysteine_alkylation
Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation ag...
Definition: cv.hpp:7560
MS_nth_generation_product_ion_scan_OBSOLETE
nth generation product ion scan: The specific scan functions or processes that record the appropriate...
Definition: cv.hpp:1431
UNIMOD_Xle__Asp
Xle->Asp: Leu/Ile->Asp substitution.
Definition: cv.hpp:10131
UNIMOD_AHA_SS_CAM
AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
Definition: cv.hpp:10500
UNIMOD_Asn__Ala
Asn->Ala: Asn->Ala substitution.
Definition: cv.hpp:10215
MS_PEAKS_inChorusProteinScore
PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
Definition: cv.hpp:7638
MS_SEQUEST_input_parameter
SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
Definition: cv.hpp:6579
MS_ProteinScape_SearchEventId
ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database...
Definition: cv.hpp:4734
MS_MS1_label_based_raw_feature_quantitation
MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
Definition: cv.hpp:6276
MS_No_fixed_modifications_searched
No fixed modifications searched: No fixed modifications are included as a parameter for the search...
Definition: cv.hpp:7650
MS_collisionally_activated_dissociation
collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion aft...
Definition: cv.hpp:594
UNIMOD_DTT_C
DTT_C: Dithiothreitol (DTT) on Cys.
Definition: cv.hpp:9357
MS_TOPP_FeatureLinkerUnlabeled
TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
Definition: cv.hpp:6816
MS_hydrogen_deuterium_exchange
hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-for...
Definition: cv.hpp:1695
MS_feature_list_attribute
feature list attribute: Attribute describing a feature list.
Definition: cv.hpp:5730
MS_distinct_peptide_level_global_FDR
distinct peptide-level global FDR: Estimation of the global false discovery rate for distinct peptide...
Definition: cv.hpp:4341
MS_Mascot_MGF_format
Mascot MGF format: Mascot MGF file format.
Definition: cv.hpp:3516
MS_c_terminal_flanking_residue
c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it ...
Definition: cv.hpp:3645
MS_ProteinExtractor_MascotPeptideScoreThreshold
ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition: cv.hpp:4533
UNIMOD_4_ONE
4-ONE: 4-Oxononenal (ONE).
Definition: cv.hpp:9321
MS_M_LDI_L
M L: Waters oa-ToF based MALDI L.
Definition: cv.hpp:717
UNIMOD_Phosphoadenosine
Phosphoadenosine: AMP binding site.
Definition: cv.hpp:8616
MS_ProteomeDiscoverer_Spectrum_Exporter_File_name
ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported da...
Definition: cv.hpp:5361
MS_PSM_level_global_FDR
PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches...
Definition: cv.hpp:7341
MS_matrix_solution
matrix solution: Describes the chemical solution used as matrix.
Definition: cv.hpp:3045
UNIMOD_Propionyl_13C_3_
Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
Definition: cv.hpp:7998
MS_ion_neutral_species_reaction
ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant t...
Definition: cv.hpp:1710
MS_target_list
target list: A list of peptides or compounds and their expected m/z coordinates that can be used to c...
Definition: cv.hpp:3309
MS_protein_identification_confidence_metric
protein identification confidence metric: Identification confidence metric for a protein.
Definition: cv.hpp:3876
MS_spectrum_descriptions
spectrum descriptions: Descriptions of the input spectra.
Definition: cv.hpp:4317
UNIMOD_EQAT_2H_5_
EQAT:2H(5): EAPTA d5.
Definition: cv.hpp:8241
UNIMOD_Succinyl_2H_4_
Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K...
Definition: cv.hpp:8016
UNIMOD_TMAB_2H_9_
TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:8766
MS_temperature_array
temperature array: A data array of temperature measurements.
Definition: cv.hpp:3012
MS_electron_volt_OBSOLETE
electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing o...
Definition: cv.hpp:615
MS_microflex
microflex: Bruker Daltonics' microflex: MALDI TOF.
Definition: cv.hpp:738
UNIMOD_Ala__Xle
Ala->Xle: Ala->Leu/Ile substitution.
Definition: cv.hpp:9894
UO_angle_unit
angle unit: A unit which is a standard measure of the figure or space formed by the junction of two l...
Definition: cv.hpp:11187
UO_illuminance_unit
illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area...
Definition: cv.hpp:11169
UNIMOD_Trp__Asp
Trp->Asp: Trp->Asp substitution.
Definition: cv.hpp:10425
MS_z_OBSOLETE
z (OBSOLETE charge number): OBSOLETE. The total charge on an ion divided by the electron charge e...
Definition: cv.hpp:858
MS_profile_spectrum
profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts p...
Definition: cv.hpp:564
MS_DSQ
DSQ: ThermoFinnigan DSQ GC-MS.
Definition: cv.hpp:2421
MS_Trans_Proteomic_Pipeline_software
Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipe...
Definition: cv.hpp:7149
UNIMOD_Arg__Ala
Arg->Ala: Arg->Ala substitution.
Definition: cv.hpp:10317
MS_Thermo_Fisher_Scientific_instrument_model
Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
Definition: cv.hpp:1896
UNIMOD_Thr__Met
Thr->Met: Thr->Met substitution.
Definition: cv.hpp:9231
MS_SEQUEST_sort_by_MH_
SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion...
Definition: cv.hpp:3480
UNIMOD_Met__Thr
Met->Thr: Met->Thr substitution.
Definition: cv.hpp:9075
UNIMOD_IGBP
IGBP: Light IDBEST tag for quantitation.
Definition: cv.hpp:8277
MS_SEQUEST_sort_by_Ref
SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference. ...
Definition: cv.hpp:3492
MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly
ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are...
Definition: cv.hpp:5514
UO_colony_forming_unit
colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers...
Definition: cv.hpp:11448
MS_quality_estimation_with_decoy_database
quality estimation with decoy database: Quality estimation by decoy database.
Definition: cv.hpp:3864
MS_field_free_region
field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields...
Definition: cv.hpp:879
UO_gram
gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
Definition: cv.hpp:10887
MS_MBMS
MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introdu...
Definition: cv.hpp:921
MS_higher_energy_beam_type_collision_induced_dissociation
higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wher...
Definition: cv.hpp:7734
MS_diagnostic_ion
diagnostic ion: A product ion whose formation reveals structural or compositional information of its ...
Definition: cv.hpp:1500
UO_unit_of_molarity
unit of molarity: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:11007
MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold
ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectr...
Definition: cv.hpp:5100
MS_ADC
ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an el...
Definition: cv.hpp:525
MS_baseline_reduction
baseline reduction: A process of removal of varying intensities generated due to variable energy abso...
Definition: cv.hpp:2277
MS_progeny_ion
progeny ion: A charged product of a series of consecutive reactions that includes product ions...
Definition: cv.hpp:1449
MS_PyMS
PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to th...
Definition: cv.hpp:1191
MS_Mascot_score
Mascot:score: The Mascot result 'Score'.
Definition: cv.hpp:3819
MS_precoated_MALDI_sample_plate
precoated MALDI sample plate: Precoated MALDI sample plate.
Definition: cv.hpp:3060
MS_MS1_label_based_protein_level_quantitation
MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
Definition: cv.hpp:6282
MS_MaxQuant_feature_intensity
MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant. ...
Definition: cv.hpp:5964
MS_Thermo_Scientific_instrument_model
Thermo Scientific instrument model: Thermo Scientific instrument model.
Definition: cv.hpp:1929
MS_Q1_spectrum
Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2202
MS_molecular_mass
molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules)...
Definition: cv.hpp:912
MS_mzidLib_FalseDiscoveryRate
mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML f...
Definition: cv.hpp:7020
UNIMOD_DiLeu4plex115
DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
Definition: cv.hpp:10653
UNIMOD_Nethylmaleimide
Nethylmaleimide: N-ethylmaleimide on cysteines.
Definition: cv.hpp:8055
MS_6490_Triple_Quadrupole_LC_MS
6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7629
std::string def
Definition: cv.hpp:11714
MS_Weierstrass_transform
Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a on...
Definition: cv.hpp:2877
MS_software
software: Software related to the recording or transformation of spectra.
Definition: cv.hpp:2046
UO_count_per_molar
count per molar: A rate unit which is equal to one over one molar.
Definition: cv.hpp:11673
UNIMOD_Pro__Trp
Pro->Trp: Pro->Trp substitution.
Definition: cv.hpp:10275
MS_positive_scan
positive scan: Polarity of the scan is positive.
Definition: cv.hpp:576
MS_Mascot_MaxProteinHits
Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.
Definition: cv.hpp:4203
MS_identification_file_attribute
identification file attribute: Attribute describing an identification file.
Definition: cv.hpp:6669
UNIMOD_Xle__Thr
Xle->Thr: Leu/Ile->Thr substitution.
Definition: cv.hpp:9018
UNIMOD_FTC
FTC: Fluorescein-5-thiosemicarbazide.
Definition: cv.hpp:8769
UNIMOD_Thrbiotinhydrazide
Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
Definition: cv.hpp:8508
UNIMOD_HNE
HNE: 4-hydroxynonenal (HNE).
Definition: cv.hpp:7983
UO_temperature_unit
temperature unit: A unit which is a standard measure of the average kinetic energy of the particles i...
Definition: cv.hpp:10839
MS_LC_MS_feature_volume
LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
Definition: cv.hpp:5778
MS_percolator_Q_value
percolator:Q value: Percolator:Q value.
Definition: cv.hpp:4719
UNIMOD_Methyl_2H_2_
Methyl:2H(2): Deuterium Methylation of Lysine.
Definition: cv.hpp:8346
UNIMOD_NIPCAM
NIPCAM: N-isopropylcarboxamidomethyl.
Definition: cv.hpp:7893
UNIMOD_LG_lactam_K
LG-lactam-K: Levuglandinyl - lysine lactam adduct.
Definition: cv.hpp:8802
MS_MALDI_Solutions
MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:4914
MS_group_PSMs_by_sequence_with_modifications
group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifi...
Definition: cv.hpp:7782
MS_param__v_ion
param: v ion: Parameter information, type of product: side chain loss v ion.
Definition: cv.hpp:4044
MS_special_processing
special processing: Details describing a special processing.
Definition: cv.hpp:7758
MS_Glu_C
Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6012
UNIMOD_DimethylpyrroleAdduct
DimethylpyrroleAdduct: 2,5-dimethypyrrole.
Definition: cv.hpp:8421
MS_BioTOF
BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
Definition: cv.hpp:4857
UNIMOD_IMID
IMID: IMID d0.
Definition: cv.hpp:8037
MS_electric_field_strength
electric field strength: The magnitude of the force per unit charge at a given point in space...
Definition: cv.hpp:1332
MS_Pepitome_mzFidelity
Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5022
MS_6340_Ion_Trap_LC_MS
6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1872
MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions
ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching...
Definition: cv.hpp:5496
UNIMOD_Hydroxamic_acid
Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
Definition: cv.hpp:10770
UNIMOD_Sulfo
Sulfo: O-Sulfonation.
Definition: cv.hpp:7944
UO_colony_forming_unit_per_milliliter
colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers...
Definition: cv.hpp:11457
MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or ...
Definition: cv.hpp:5220
UNIMOD_TMAB
TMAB: 4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:8763
MS_cyclotron_motion
cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field ...
Definition: cv.hpp:1323
MS_TOPP_peak_picker
TOPP peak picker: Peak picker component of the TOPP software.
Definition: cv.hpp:6690
UNIMOD_Label_13C_6_15N_4__Methyl
Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:9789
MS_MPI
MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons ...
Definition: cv.hpp:927
UNIMOD_Pro__Met
Pro->Met: Pro->Met substitution.
Definition: cv.hpp:10266
MS_ProteomeDiscoverer_WinCyg_source_files
ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
Definition: cv.hpp:5478
MS_neutralization_reionization_mass_spectrometry
neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals b...
Definition: cv.hpp:1176
MS_vertical_ionization
vertical ionization: A process in which an electron is removed from or added to a molecule without a ...
Definition: cv.hpp:1644
MS_MAT900XP
MAT900XP: ThermoFinnigan MAT900XP MS.
Definition: cv.hpp:726
UNIMOD_HexNAc_1_dHex_2_
HexNAc(1)dHex(2): HexNAc1dHex2.
Definition: cv.hpp:8142
MS_database_name
database name: The name of the search database (nr, SwissProt or est_human).
Definition: cv.hpp:3384
UNIMOD_Label_15N_3_
Label:15N(3): 15N(3).
Definition: cv.hpp:9768
UNIMOD_BMOE
BMOE: Addition of BMOE crosslinker.
Definition: cv.hpp:9462
MS_Pegasus_III
Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:7122
MS_contact_fax_number
contact fax number: Fax number for the contact person or organization.
Definition: cv.hpp:5523
UNIMOD_Glu__Gln
Glu->Gln: Glu->Gln substitution.
Definition: cv.hpp:8949
MS_no_PSM_threshold
no PSM threshold: Indicating that no PSM threshold was used.
Definition: cv.hpp:7794
UNIMOD_PropylNAGthiazoline
PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline...
Definition: cv.hpp:8823
MS_database_UniProtKB_Swiss_Prot
database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
Definition: cv.hpp:3618
UO_mole
mole: A substance unit which is equal to the amount of substance of a molecular system which contains...
Definition: cv.hpp:10863
MS_Paragon__digestion
Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other s...
Definition: cv.hpp:7599
MS_thomson
thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass ...
Definition: cv.hpp:231
UNIMOD_Cation_Zn_II_
Cation:Zn[II]: Replacement of 2 protons by zinc.
Definition: cv.hpp:9690
UNIMOD_Methylthio
Methylthio: Beta-methylthiolation.
Definition: cv.hpp:7941
UNIMOD_Met__Tyr
Met->Tyr: Met->Tyr substitution.
Definition: cv.hpp:10212
UNIMOD_HCysThiolactone
HCysThiolactone: N-Homocysteine thiolactone.
Definition: cv.hpp:10548
UNIMOD_Deamidated
Deamidated: Deamidation.
Definition: cv.hpp:7872
UNIMOD_Hex_2_HexNAc_2_dHex_1_
Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
Definition: cv.hpp:8181
MS_Quattro_UItima
Quattro UItima: Waters oa-ToF based Ultima.
Definition: cv.hpp:783
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks
ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss pea...
Definition: cv.hpp:5130
MS_Scaffold
Scaffold: Scaffold analysis software.
Definition: cv.hpp:4923
UNIMOD_Acetyl_2H_3_
Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
Definition: cv.hpp:7992
MS_ProteinLynx_Ladder_Score
ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
Definition: cv.hpp:4953
MS_higher_score_better
higher score better: Indicates that a higher score is better.
Definition: cv.hpp:6612
MS_SIM_spectrum
SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of ...
Definition: cv.hpp:2226
UNIMOD_Ala__Arg
Ala->Arg: Ala->Arg substitution.
Definition: cv.hpp:9909
MS_infusion
infusion: The continuous flow of solution of a sample into the ionization source. ...
Definition: cv.hpp:297
MS_amaZon_Speed
amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7194
MS_nanoelectrospray
nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is sy...
Definition: cv.hpp:1611
UNIMOD_Lys__Val
Lys->Val: Lys->Val substitution.
Definition: cv.hpp:10167
MS_reporter_ion_normalized_value
reporter ion normalized value: Normalized value of MS/MS reporter ion (e.g. iTraq).
Definition: cv.hpp:5826
MS_desorption_ionization_on_silicon
desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample de...
Definition: cv.hpp:1581
MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the princip...
Definition: cv.hpp:372
MS_TOPP_MascotAdapter
TOPP MascotAdapter: Identifies MS/MS spectra using the external program Mascot.
Definition: cv.hpp:6834
MS_quistor_OBSOLETE
quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap...
Definition: cv.hpp:1305
MS_doi
doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
Definition: cv.hpp:6027
MS_Scaffold_Peptide_Probability
Scaffold:Peptide Probability: Scaffold peptide probability score.
Definition: cv.hpp:4944
MS_count_of_identified_clusters
count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
Definition: cv.hpp:7509
MS_AE
AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a ...
Definition: cv.hpp:846
MS_4700_Proteomics_Analyzer
4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
Definition: cv.hpp:627
MS_IMS
IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer ...
Definition: cv.hpp:1110
MS_Thermo_RAW_format
Thermo RAW format: Thermo Scientific RAW file format.
Definition: cv.hpp:2145
UNIMOD_Asp__Asn
Asp->Asn: Asp->Asn substitution.
Definition: cv.hpp:8931
UO_watt_per_meter_kelvin
watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin...
Definition: cv.hpp:11613
UO_katal
katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second...
Definition: cv.hpp:11184
MS_surface_enhanced_neat_desorption
surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is ...
Definition: cv.hpp:1218
MS_dataset_submitter
dataset submitter: A person who submits a dataset to a repository.
Definition: cv.hpp:6396
UNIMOD_Trp__Arg
Trp->Arg: Trp->Arg substitution.
Definition: cv.hpp:9267
MS_ion_optics
ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise man...
Definition: cv.hpp:1827
MS_no_nativeID_format
no nativeID format: No nativeID format indicates that the file tagged with this term does not contain...
Definition: cv.hpp:3018
MS_electron_multiplier
electron multiplier: A device to amplify the current of a beam or packet of charged particles or phot...
Definition: cv.hpp:1059
MS_Phenyx_Turbo_ErrorTol
Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of ...
Definition: cv.hpp:4389
MS_MALDI_LTQ_Orbitrap
MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
Definition: cv.hpp:2448
UNIMOD_Ethoxyformyl
Ethoxyformyl: Ethoxyformylation.
Definition: cv.hpp:9612
MS_chromatogram_attribute
chromatogram attribute: Chromatogram properties that are associated with a value. ...
Definition: cv.hpp:2967
UNIMOD_phosphoRibosyl
phosphoRibosyl: Phosphate-ribosylation.
Definition: cv.hpp:10710
MS_MapNormalizer
MapNormalizer: Normalizes peak intensities in an MS run.
Definition: cv.hpp:2799
MS_protein_value__sum_of_peptide_values
protein value: sum of peptide values: Protein quantification value calculated as sum of peptide value...
Definition: cv.hpp:5808
MS_high_energy_collision
high energy collision: Collision-induced dissociation process wherein the projectile ion has laborato...
Definition: cv.hpp:1683
UNIMOD_Thioacyl
Thioacyl: 3-sulfanylpropanoyl.
Definition: cv.hpp:8094
MS_mass_table_options
mass table options: Root node for options for the mass table used.
Definition: cv.hpp:4311
MS_declustering_potential
declustering potential: Potential difference between the orifice and the skimmer in volts...
Definition: cv.hpp:3174
MS_sequence_subsumable_protein
sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are di...
Definition: cv.hpp:5049
UO_information_unit
information unit: A unit which is a standard measure of the amount of information.
Definition: cv.hpp:11511
MS_Mascot_PreferredTaxonomy
Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same s...
Definition: cv.hpp:5634
MS_DLI
DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray ...
Definition: cv.hpp:1038
MS_generic_experimental_condition
generic experimental condition: The experimental condition is given in the value of this term...
Definition: cv.hpp:5697
MS_mass_unit_OBSOLETE
mass unit: A unit of measurement for mass.
Definition: cv.hpp:1836
MS_quality_estimation_method_details
quality estimation method details: Method for quality estimation (manually or with decoy database)...
Definition: cv.hpp:3510
MS_ProteomeDiscoverer_Max_Precursor_Mass
ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion...
Definition: cv.hpp:5076
UNIMOD_Delta_H_8_C_6_O_1_
Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
Definition: cv.hpp:10638
MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE
Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that und...
Definition: cv.hpp:1383
MS_Resampler
Resampler: Transforms an LC/MS map into a resampled map or a png image.
Definition: cv.hpp:2808
MS_fluorescence_detector
fluorescence detector: A detector using a fluorescent signal after excitation with light...
Definition: cv.hpp:7215
MS_ABI
ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
Definition: cv.hpp:1935
MS_fragment_neutral_loss
fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion...
Definition: cv.hpp:4818
MS_scan_window_upper_limit
scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:1953
MS_CID
CID (collision-induced dissociation): The dissociation of an ion after collisional excitation...
Definition: cv.hpp:588
MS_TOPP_IDMapper
TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
Definition: cv.hpp:6861
UNIMOD_Xlink_B10621
Xlink:B10621: Bis-N-I-sulfonerahodamine.
Definition: cv.hpp:8433
UO_square_centimeter
square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2]...
Definition: cv.hpp:11067
UO_irradiance_unit
irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a su...
Definition: cv.hpp:11280
MS_peak_intensity_rank
peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
Definition: cv.hpp:3270
Information about an ontology or CV source and a short 'lookup' tag to refer to.
Definition: cv.hpp:11681
MS_ProteomeDiscoverer_max_differential_modifications
ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM...
Definition: cv.hpp:7251
UNIMOD_Thr__Cys
Thr->Cys: Thr->Cys substitution.
Definition: cv.hpp:10359
MS_moving_wire
moving wire: Continuous moving surface in the form of a wire which passes through an ion source carry...
Definition: cv.hpp:309
MS_TIC_chromatogram
TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion cu...
Definition: cv.hpp:957
UNIMOD_dHex_1_Hex_6_
dHex(1)Hex(6): Hex6dHex1.
Definition: cv.hpp:10752
UNIMOD_Asp__Trp
Asp->Trp: Asp->Trp substitution.
Definition: cv.hpp:9984
UNIMOD_Glu__Tyr
Glu->Tyr: Glu->Tyr substitution.
Definition: cv.hpp:10020
UNIMOD_iodoTMT6plex
iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:10686
UNIMOD_Label_15N_2_2H_9_
Label:15N(2)2H(9): SILAC label.
Definition: cv.hpp:9663
MS_alternate_mass
alternate mass: List of masses a non-standard letter code is replaced with.
Definition: cv.hpp:4332
MS_simple_ratio_of_two_values
simple ratio of two values: Simple ratio of two values (enumerator and denominator).
Definition: cv.hpp:5799
MS_de_novo_search
de novo search: A de novo sequencing search (without database).
Definition: cv.hpp:3375
UO_volume_percentage
volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL pe...
Definition: cv.hpp:11313
MS_collision_induced_dissociation
collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
Definition: cv.hpp:585
UNIMOD_SecNEM_2H_5_
SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:9858
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmen...
Definition: cv.hpp:5103
UNIMOD_Met__Val
Met->Val: Met->Val substitution.
Definition: cv.hpp:9087
MS_site_global_FDR
site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modi...
Definition: cv.hpp:7308
UO_radian
radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc ...
Definition: cv.hpp:11193
UNIMOD_Arg__Ser
Arg->Ser: Arg->Ser substitution.
Definition: cv.hpp:9150
MS_TrypChymo
TrypChymo: Cleavage agent TrypChymo.
Definition: cv.hpp:4188
MS_ion_optics_type
ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectromete...
Definition: cv.hpp:2292
MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE
ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer applicat...
Definition: cv.hpp:5301
UNIMOD_Ethyl
Ethyl: Ethylation.
Definition: cv.hpp:8340
MS_atmospheric_pressure_photoionization
atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ...
Definition: cv.hpp:1566
MS_ProteinExtractor_Score
ProteinExtractor:Score: The score calculated by ProteinExtractor.
Definition: cv.hpp:4767
UNIMOD_Thiophos_S_S_biotin
Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
Definition: cv.hpp:8451
MS_PolyTools
PolyTools: Bruker PolyTools software.
Definition: cv.hpp:2697
MS_light_labeled_peptide
light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usu...
Definition: cv.hpp:3228
MS_PIA_protein_inference
PIA:protein inference: The used algorithm for the protein inference using PIA.
Definition: cv.hpp:7476
MS_LTQ_Orbitrap
LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
Definition: cv.hpp:1779
UNIMOD_ICAT_C_13C_9_
ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
Definition: cv.hpp:8049
UNIMOD_Deoxy
Deoxy: Reduction.
Definition: cv.hpp:8724
MS_Mascot_SigThresholdType
Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or '...
Definition: cv.hpp:5529
MS_minimum_number_of_enzymatic_termini
minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be ac...
Definition: cv.hpp:4974
MS_taxonomy__common_name
taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4641
UNIMOD_iTRAQ4plex115
iTRAQ4plex115: Accurate mass for 115.
Definition: cv.hpp:8865
MS_SpectraST_delta
SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up...
Definition: cv.hpp:4500
UNIMOD_Val__Asn
Val->Asn: Val->Asn substitution.
Definition: cv.hpp:10398
MS_faraday_cup
faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically ...
Definition: cv.hpp:501
MS_contact_toll_free_phone_number
contact toll-free phone number: Toll-free phone number of the contact person or organization.
Definition: cv.hpp:5526
MS_experiment_name
experiment name: The name for identifying an experiment.
Definition: cv.hpp:6648
UNIMOD_UgiJoullieProGlyProGly
UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid...
Definition: cv.hpp:10572
UNIMOD_trifluoro
trifluoro: Trifluoroleucine replacement of leucine.
Definition: cv.hpp:9393
MS______FYWL_____P_
(?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
Definition: cv.hpp:4245
UNIMOD_Phe__Ser
Phe->Ser: Phe->Ser substitution.
Definition: cv.hpp:8964
MS_frag__x_ion___H2O
frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
Definition: cv.hpp:4803
MS_MS1_label_based_peptide_level_quantitation
MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
Definition: cv.hpp:6279
MS_PAnalyzer_conclusive_protein
PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
Definition: cv.hpp:6927
UNIMOD_Asp__Cys
Asp->Cys: Asp->Cys substitution.
Definition: cv.hpp:9954
UO_parts_per_million
parts per million: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:11325
MS_Maltcms
Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework...
Definition: cv.hpp:7323
MS_maXis_4G
maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7125
MS_ProteinScape_second_round_Phenyx
ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
Definition: cv.hpp:6159
MS_protein_inference_confidence_category
protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
Definition: cv.hpp:5055
MS_SRM_chromatogram
SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an arr...
Definition: cv.hpp:4662
UNIMOD_Withaferin
Withaferin: Modification of cystein by withaferin.
Definition: cv.hpp:9864
UNIMOD_Biotin_Thermo_88317
Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
Definition: cv.hpp:9867
MS_product_ion_detection_probability
product ion detection probability: Probability of detecting product ion when precursor ion is present...
Definition: cv.hpp:6960
MS_LD_OBSOLETE
LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or wi...
Definition: cv.hpp:1143
UNIMOD_OxArgBiotin
OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:8070
MS_Bruker_Daltonics_SCION_series
Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
Definition: cv.hpp:7170
UNIMOD_Xlink_EGScleaved
Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.
Definition: cv.hpp:9846
UNIMOD_pyrophospho
pyrophospho: Pyrophosphorylation of Ser/Thr.
Definition: cv.hpp:9570
UNIMOD_ethylsulfonylethyl
ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
Definition: cv.hpp:10758
MS_QSTAR
QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
Definition: cv.hpp:777
UNIMOD_Hydroxymethyl
Hydroxymethyl: Hydroxymethyl.
Definition: cv.hpp:8640
MS_Waters_software
Waters software: Waters software for data acquisition and analysis.
Definition: cv.hpp:2598
MS_B
B (magnetic field strength): A property of space that produces a force on a charged particle equal to...
Definition: cv.hpp:177
UNIMOD_Asp__Ala
Asp->Ala: Asp->Ala substitution.
Definition: cv.hpp:8925
MS_Thermo_Finnigan_software
Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2595
MS_Xevo_G2_Q_Tof
Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
Definition: cv.hpp:5604
UNIMOD_Lys__Asp
Lys->Asp: Lys->Asp substitution.
Definition: cv.hpp:10149
MS_Paragon_contrib
Paragon:contrib: The Paragon result 'Contrib'.
Definition: cv.hpp:3816
MS_Phenyx_Auto
Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
Definition: cv.hpp:4428
MS_peptide_shared_in_multiple_proteins
peptide shared in multiple proteins: A peptide matching multiple proteins.
Definition: cv.hpp:3831
UNIMOD_Nitro
Nitro: Oxidation to nitro.
Definition: cv.hpp:8496
MS_MaxQuant_peptide_counts__unique_
MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant...
Definition: cv.hpp:5946
MS_constant_neutral_mass_loss_OBSOLETE
constant neutral mass loss: A spectrum formed of all product ions that have been produced with a sele...
Definition: cv.hpp:444
MS_Th
Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an...
Definition: cv.hpp:228
MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE
ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files...
Definition: cv.hpp:5058
MS_Profound_Cluster
Profound:Cluster: The Profound cluster score.
Definition: cv.hpp:4743
UO_amount_per_container
amount per container: A concentration unit which is a standard measure of the amount of a substance i...
Definition: cv.hpp:11646
UO_radian_per_second_per_second
radian per second per second: An angular unit acceleration which is equal to the angular acceleration...
Definition: cv.hpp:11058
UNIMOD_Tyr__Ser
Tyr->Ser: Tyr->Ser substitution.
Definition: cv.hpp:9279
UO_weber
weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn ...
Definition: cv.hpp:11496
MS_selection_window_attribute
selection window attribute: Selection window properties that are associated with a value...
Definition: cv.hpp:2103
UNIMOD_AROD
AROD: Cysteine modifier.
Definition: cv.hpp:9645
MS_value_greater_than_zero
value greater than zero: Positive value range.
Definition: cv.hpp:7209
MS_SNAP
SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured s...
Definition: cv.hpp:6267
MS_selected_ion_flow_tube
selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and...
Definition: cv.hpp:1230
MS_additional_description_OBSOLETE
additional description: Terms to describe Additional.
Definition: cv.hpp:1824
UNIMOD_Tyr__Lys
Tyr->Lys: Tyr->Lys substitution.
Definition: cv.hpp:10470
MS_SQID_deltaScore
SQID:deltaScore: The SQID result 'deltaScore'.
Definition: cv.hpp:5919
MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites
ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider...
Definition: cv.hpp:5226
MS_param__y_ion
param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side...
Definition: cv.hpp:4059
MS_MS2_tag_based_analysis
MS2 tag-based analysis: MS2 tag-based analysis.
Definition: cv.hpp:6354
MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score
ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do ...
Definition: cv.hpp:7428
MS_X_Tandem_hyperscore
X!Tandem:hyperscore: The X!Tandem hyperscore.
Definition: cv.hpp:4242
MS_m_z_Separation_Method
m/z Separation Method: Mass/charge separation Method.
Definition: cv.hpp:1761
MS_q
q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so a...
Definition: cv.hpp:1197
MS_database_filtering
database filtering: Was there filtering used on the database.
Definition: cv.hpp:3402
MS_negative_ion
negative ion: An atomic or molecular species having a net negative electric charge.
Definition: cv.hpp:1530
UNIMOD_O_Methylphosphate
O-Methylphosphate: O-Methylphosphorylation.
Definition: cv.hpp:9327
MS_Digital_Object_Identifier__DOI_
Digital Object Identifier (DOI): DOI unique identifier of a publication.
Definition: cv.hpp:6024
MS_Asp_N_ambic
Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
Definition: cv.hpp:4167
MS_CNBr
CNBr: Cyanogen bromide.
Definition: cv.hpp:4173
UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_
MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide...
Definition: cv.hpp:8643
MS_SpectrumMill_Score
SpectrumMill:Score: Spectrum mill peptide score.
Definition: cv.hpp:4956
UNIMOD_Deoxyhypusine
Deoxyhypusine: Deoxyhypusine.
Definition: cv.hpp:9876
UNIMOD_Xlink_DMP_s
Xlink:DMP-s: One end of crosslink attached, one end free.
Definition: cv.hpp:8748
UO_decibel
decibel: An ratio unit which is an indicator of sound power per unit area.
Definition: cv.hpp:11595
UNIMOD_Pro__Asn
Pro->Asn: Pro->Asn substitution.
Definition: cv.hpp:10269
MS_mzidLib_Mzidentml2Csv
mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
Definition: cv.hpp:7023
UNIMOD_Asn__Cys
Asn->Cys: Asn->Cys substitution.
Definition: cv.hpp:10218
MS_param__a_ion_H2O_DEPRECATED
param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
Definition: cv.hpp:3750
MS_TOPP_FeatureFinderRaw
TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
Definition: cv.hpp:6789
MS_mass_trace_reporting__polygons
mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygon...
Definition: cv.hpp:5736
MS_search_engine_specific_score_for_distinct_peptides
search engine specific score for distinct peptides: Search engine specific distinct peptide score...
Definition: cv.hpp:7365
MS_ProteinProspector
ProteinProspector: ProteinProspector software for data acquisition and analysis.
Definition: cv.hpp:6417
UNIMOD_Asp__Xle
Asp->Xle: Asp->Leu/Ile substitution.
Definition: cv.hpp:9960
MS_LTQ_Orbitrap_XL_ETD
LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
Definition: cv.hpp:2436
MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation
ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor r...
Definition: cv.hpp:5511
UNIMOD_OxLysBiotinRed
OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:8058
UO_count_per_nanomolar_second
count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
Definition: cv.hpp:11661
MS_Byonic__Protein_AbsLogProb
Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition: cv.hpp:7221
UNIMOD_Pro__Asp
Pro->Asp: Pro->Asp substitution.
Definition: cv.hpp:10251
MS_transition_validation_method
transition validation method: The strategy used to validate that a transition is effective.
Definition: cv.hpp:3282
MS_cone_voltage
cone voltage: Potential difference between the sampling cone/orifice in volts.
Definition: cv.hpp:3177
UNIMOD_Asp__Phe
Asp->Phe: Asp->Phe substitution.
Definition: cv.hpp:9957
UNIMOD_maleimide3
maleimide3: Maleimide-3-saccharide.
Definition: cv.hpp:9717
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5412
UO_micron_pixel
micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
Definition: cv.hpp:11541
UNIMOD_Methyl_Acetyl_2H_3_
Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:9417
MS_quick_and_dirty_MALDI_sample_preparation
quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix ha...
Definition: cv.hpp:6249
MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE
ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format)...
Definition: cv.hpp:5061
UNIMOD_Trp__Oxolactone
Trp->Oxolactone: Tryptophan oxidation to oxolactone.
Definition: cv.hpp:8355
MS_regular_expression
regular expression: Regular expression.
Definition: cv.hpp:7728
MS_H_Score
H-Score: H-Score for peptide phosphorylation site location.
Definition: cv.hpp:6228
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5409
MS_MSQuant_PTM_score
MSQuant:PTM-score: The PTM score from MSQuant software.
Definition: cv.hpp:6204
MS_SEQUEST_probability
SEQUEST:probability: The SEQUEST result 'Probability'.
Definition: cv.hpp:3768
MS_Bioworks_SRF_format
Bioworks SRF format: Thermo Finnigan SRF file format.
Definition: cv.hpp:2742
MS_distinct_peptide_sequences
distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a mi...
Definition: cv.hpp:3597
MS_BSI_software
BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
Definition: cv.hpp:6111
MS_MS1_label_based_proteingroup_level_quantitation
MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation...
Definition: cv.hpp:6285
MS_dimeric_ion
dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral ...
Definition: cv.hpp:1503
MS_ECD
ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts wit...
Definition: cv.hpp:1044
MS_sandwich_MALDI_sample_preparation
sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
Definition: cv.hpp:6243
UNIMOD_maleimide
maleimide: Maleimide.
Definition: cv.hpp:9426
MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measu...
Definition: cv.hpp:5163
MS_ProteinExtractor_MascotWeighting
ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the sea...
Definition: cv.hpp:4542
UNIMOD_Asn__His
Asn->His: Asn->His substitution.
Definition: cv.hpp:9102
UNIMOD_ADP_Ribosyl
ADP-Ribosyl: ADP Ribose addition.
Definition: cv.hpp:8271
MS_Synapt_MS
Synapt MS: Waters oa-ToF based Synapt MS.
Definition: cv.hpp:5601
MS_Bruker_software
Bruker software: Bruker software for data acquisition and analysis.
Definition: cv.hpp:2592
UNIMOD_His__Xle
His->Xle: His->Leu/Ile substitution.
Definition: cv.hpp:9015
UNIMOD_Nmethylmaleimide_water
Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
Definition: cv.hpp:8796
MS_charge_exchange_ionization
charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on...
Definition: cv.hpp:1575
PWIZ_API_DECL const std::vector< CVID > & cvids()
returns vector of all valid CVIDs
MS_spectrum_identification_result_details
spectrum identification result details: This subsection describes terms which can describe details of...
Definition: cv.hpp:4455
MS_collisional_excitation
collisional excitation: The reaction of an ion with a neutral species in which the translational ener...
Definition: cv.hpp:1674
MS_final_MS_exponent
final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
Definition: cv.hpp:171
MS_Shimadzu_Biotech_database_entity
Shimadzu Biotech database entity: Shimadzu Biotech format.
Definition: cv.hpp:3345
MS_accuracy
accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
Definition: cv.hpp:141
MS_protein_group_level_statistical_threshold
protein group-level statistical threshold: Estimated statistical threshold at protein group-level...
Definition: cv.hpp:7749
UO_surface_tension_unit
surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of ...
Definition: cv.hpp:11577
MS_apexControl
apexControl: Bruker software for data acquisition.
Definition: cv.hpp:2634
UNIMOD_OxProBiotinRed
OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:8064
UNIMOD_ICPL_13C_6_2H_4_
ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form...
Definition: cv.hpp:9519
UO_milliliter_per_cubic_meter
milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter ...
Definition: cv.hpp:11436
MS_HCTcontrol
HCTcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2691
MS_protein_result_details
protein result details: Protein level information.
Definition: cv.hpp:3561
MS_second_pass_peptide_identification
second-pass peptide identification: A putative identified peptide found in a second-pass search of pr...
Definition: cv.hpp:7314
UNIMOD_Label_13C_6_15N_4__Dimethyl
Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:9792
MS_ions_series_considered
ions series considered: The ion series that were used during the calculation of the count (e...
Definition: cv.hpp:3672
UO_heat_conduction_unit
heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of t...
Definition: cv.hpp:11607
UNIMOD_HCysteinyl
HCysteinyl: S-homocysteinylation.
Definition: cv.hpp:10551
MS_quattro_micro
quattro micro: Waters oa-ToF based micro.
Definition: cv.hpp:780
MS_calibration_spectrum
calibration spectrum: A spectrum derived from a special calibration source, rather than from the prim...
Definition: cv.hpp:3339
MS_TOPP_ProteinInference
TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
Definition: cv.hpp:6897
MS_SEQUEST_sort_by_dM
SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically ca...
Definition: cv.hpp:3474
MS_TOPP_PeakPickerWavelet
TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted prof...
Definition: cv.hpp:6696
MS_GD_MS
GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at t...
Definition: cv.hpp:1098
MS_frag__y_ion
frag: y ion: Fragmentation information, type of product: y ion.
Definition: cv.hpp:3933
MS_surface_induced_dissociation
surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface...
Definition: cv.hpp:609
MS_chemical_compound
chemical compound: A substance formed by chemical union of two or more elements or ingredients in def...
Definition: cv.hpp:3192
MS_decoy_DB_type_reverse
decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order...
Definition: cv.hpp:3867
MS_aromatic_ion
aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer ...
Definition: cv.hpp:1482
MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE
ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be ...
Definition: cv.hpp:5148
UO_milligram_per_milliliter
milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divid...
Definition: cv.hpp:11346
MS_ProteomeDiscoverer_Source_Files_OBSOLETE
ProteomeDiscoverer:Source Files: Input pepXML files.
Definition: cv.hpp:5469
MS_excludes_supersede_includes
excludes supersede includes: A priority setting specifying that excluded targets have priority over t...
Definition: cv.hpp:3318
UO_angular_velocity_unit
angular velocity unit: A unit which is a standard measure of the rate of angular movement about an ax...
Definition: cv.hpp:10971
MS_quantile_normalization__peptides
quantile normalization, peptides: Normalization of peptide values to approach the same distribution...
Definition: cv.hpp:5847
MS_predicted_isoelectric_point
predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an...
Definition: cv.hpp:3135
MS_LTQ_FT_Ultra
LTQ FT Ultra: LTQ FT Ultra.
Definition: cv.hpp:2127
UNIMOD_Cation_Cu_I_
Cation:Cu[I]: Replacement of proton by copper.
Definition: cv.hpp:8859
UNIMOD_Asp__Gly
Asp->Gly: Asp->Gly substitution.
Definition: cv.hpp:8934
UNIMOD_Val__Cys
Val->Cys: Val->Cys substitution.
Definition: cv.hpp:10389
UNIMOD_Ala__Phe
Ala->Phe: Ala->Phe substitution.
Definition: cv.hpp:9888
MS_curator_keyword
curator keyword: Keyword assigned by a data curator.
Definition: cv.hpp:6039
MS_Phenyx_User
Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
Definition: cv.hpp:4431
UNIMOD_Myristoyl_Delta_H__4_
Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
Definition: cv.hpp:8115
MS_time_lag_focusing
time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by intr...
Definition: cv.hpp:1260
UO_activity__of_a_radionuclide__unit
activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disinteg...
Definition: cv.hpp:11205
MS_scan
scan: Function or process of the mass spectrometer where it records a spectrum.
Definition: cv.hpp:1752
MS_MS_Numpress_positive_integer_compression
MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression...
Definition: cv.hpp:7230
MS_plasma_desorption_ionization
plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ioni...
Definition: cv.hpp:1620
MS_Mascot_C13_counts
Mascot:C13 counts: C13 peaks to use in peak detection.
Definition: cv.hpp:6150
MS_analyzer_type_OBSOLETE
analyzer type: The common name of the particular analyzer stage being described. Synonym of mass anal...
Definition: cv.hpp:129
UNIMOD_Cys__Oxoalanine
Cys->Oxoalanine: Oxoalanine.
Definition: cv.hpp:8610
MS_Citius_HRT
Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
Definition: cv.hpp:5661
UNIMOD_ICAT_D_2H_8_
ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
Definition: cv.hpp:7887
UNIMOD_Maleimide_PEO2_Biotin
Maleimide-PEO2-Biotin: Maleimide-Biotin.
Definition: cv.hpp:8838
MS_ESA
ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
Definition: cv.hpp:1068
UNIMOD_SulfurDioxide
SulfurDioxide: SulfurDioxide.
Definition: cv.hpp:10668
MS_FAIMS_compensation_voltage
FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compens...
Definition: cv.hpp:4983
MS_Progeny_Fragment_Ion
Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that inclu...
Definition: cv.hpp:1452
UNIMOD_Iodoacetanilide
Iodoacetanilide: Iodoacetanilide derivative.
Definition: cv.hpp:10803
MS_Xevo_TQ_MS
Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
Definition: cv.hpp:5625
UO_molar_volume_unit
molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance contai...
Definition: cv.hpp:10992
MS_Maui
Maui: The Maltcms Graphical User Interface.
Definition: cv.hpp:7647
MS_Mascot_ShowDecoyMatches
Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated deco...
Definition: cv.hpp:4227
MS_nativeID_format
nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers ar...
Definition: cv.hpp:2820
MS_emulsion
emulsion: State if the sample is in emulsion form.
Definition: cv.hpp:255
UNIMOD_Label_13C_6_15N_2__Acetyl
Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
Definition: cv.hpp:9480
UNIMOD_SMA
SMA: N-Succinimidyl-2-morpholine acetate.
Definition: cv.hpp:7920
MS_SEQUEST_ProcessCV
SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
Definition: cv.hpp:3567
UNIMOD_Amidated
Amidated: Amidation.
Definition: cv.hpp:7857
MS_6410_Triple_Quad_LC_MS
6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent ...
Definition: cv.hpp:1878
UO_acceleration_unit
acceleration unit: A unit which is a standard measure of the rate of change of velocity in either spe...
Definition: cv.hpp:10968
MS_mass_limit_OBSOLETE
mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
Definition: cv.hpp:1344
MS_APPI_OBSOLETE
APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the r...
Definition: cv.hpp:990
MS_TagRecon
TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
Definition: cv.hpp:5004
UNIMOD_Cys__His
Cys->His: Cys->His substitution.
Definition: cv.hpp:9927
UO_tesla
tesla: A magnetic flux density unit which is equal to one weber per square meter. ...
Definition: cv.hpp:11502
MS_SQ_Detector_2
SQ Detector 2: Waters quadrupole based SQ Detector 2.
Definition: cv.hpp:7110
UNIMOD_Cys__PyruvicAcid
Cys->PyruvicAcid: Pyruvic acid from N-term cys.
Definition: cv.hpp:8562
MS_Collision_cell_exit_potential
Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrume...
Definition: cv.hpp:6093
MS_spectral_library_search
spectral library search: A search using a library of spectra.
Definition: cv.hpp:3438
MS_Phenyx_PepPvalue
Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
Definition: cv.hpp:4437
UNIMOD_Asn__Pro
Asn->Pro: Asn->Pro substitution.
Definition: cv.hpp:10233
UNIMOD_Lys__Met
Lys->Met: Lys->Met substitution.
Definition: cv.hpp:9039
MS_ionization_efficiency
ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
Definition: cv.hpp:1596
MS_SILAC_quantitation_analysis
SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
Definition: cv.hpp:5760
MS_SRM_transition_ID
SRM transition ID: Identifier for an SRM transition in an external document describing additional inf...
Definition: cv.hpp:5742
MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions
ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5325
UNIMOD_Label_13C_6__GlyGly
Label:13C(6)+GlyGly: 13C6 labeled ubiquitinylation residue.
Definition: cv.hpp:9444
MS_experimental_condition__disease_
experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'...
Definition: cv.hpp:5691
MS_spectrum_identification_list_result_details
spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificati...
Definition: cv.hpp:7605
MS_mass_spectrometry_OBSOLETE
mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the re...
Definition: cv.hpp:1152
UNIMOD_Met__Gly
Met->Gly: Met->Gly substitution.
Definition: cv.hpp:10191
MS_product_ion_spectrum
product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record p...
Definition: cv.hpp:2220
MS_add_others_OBSOLETE
add_others: OBSOLETE.
Definition: cv.hpp:4230
UNIMOD_GIST_Quat_2H_3_
GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
Definition: cv.hpp:8004
UO_pH
pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activi...
Definition: cv.hpp:11406
MS_peptide_result_details
peptide result details: Peptide level information.
Definition: cv.hpp:3621
MS_Q_Tof_Premier
Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
Definition: cv.hpp:2415
UNIMOD_Glu__Thr
Glu->Thr: Glu->Thr substitution.
Definition: cv.hpp:10014
MS_fragmentation_ion_type
fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a...
Definition: cv.hpp:7212
MS_MS_GF_Energy
MS-GF:Energy: MS-GF energy score.
Definition: cv.hpp:6444
MS_infrared_multiphoton_dissociation
infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a res...
Definition: cv.hpp:1113
MS_decoy_DB_type_randomized
decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the or...
Definition: cv.hpp:3870
MS_SELDI
SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas pha...
Definition: cv.hpp:1215
MS_V8_E
V8-E: Cleavage agent V8-E.
Definition: cv.hpp:4197
UNIMOD_Trp__Pro
Trp->Pro: Trp->Pro substitution.
Definition: cv.hpp:10446
MS_AAIndex_mass_table
AAIndex mass table: The masses used in the mass table are taken from AAIndex.
Definition: cv.hpp:4287
MS_unified_atomic_mass_unit_OBSOLETE
unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground sta...
Definition: cv.hpp:963
UNIMOD_Dehydrated
Dehydrated: Dehydration.
Definition: cv.hpp:7902
MS_mass_selective_axial_ejection
mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z va...
Definition: cv.hpp:1350
MS_search_tolerance_minus_value
search tolerance minus value:
Definition: cv.hpp:4479
MS_u_OBSOLETE
u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground...
Definition: cv.hpp:966
UNIMOD_Met__Asp
Met->Asp: Met->Asp substitution.
Definition: cv.hpp:10182
MS_nanoACQUITY_UPLC_System_with_Technology
nanoACQUITY UPLC System with Technology: Waters LC-system nanoACQUITY UPLC System with Technology...
Definition: cv.hpp:5556
MS_dwell_time
dwell time: The time spent gathering data across a peak.
Definition: cv.hpp:1959
MS_jet_separator
jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of dif...
Definition: cv.hpp:300
UNIMOD_Xle__Asn
Xle->Asn: Leu/Ile->Asn substitution.
Definition: cv.hpp:9021
MS_Genespring_MS
Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data...
Definition: cv.hpp:2568
MS_TOPP_AdditiveSeries
TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples...
Definition: cv.hpp:6774
UNIMOD_Xlink_DTSSP
Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.
Definition: cv.hpp:9837
MS_param__y_ion_H3PO4_DEPRECATED
param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
Definition: cv.hpp:7644
MS_protein_name
protein name: A long name describing the function of the protein.
Definition: cv.hpp:3207
MS_high_field_asymmetric_waveform_ion_mobility_spectrometry
high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentr...
Definition: cv.hpp:1077
structure for holding CV term info
Definition: cv.hpp:11709
UNIMOD_maleimide5
maleimide5: Maleimide-5-saccharide.
Definition: cv.hpp:9720
MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide
ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modif...
Definition: cv.hpp:5271
MS_detector_resolution
detector resolution: The resolving power of the detector to detect the smallest difference between tw...
Definition: cv.hpp:186
MS_LCQ_Deca
LCQ Deca: ThermoFinnigan LCQ Deca.
Definition: cv.hpp:2118
MS_scan_attribute
scan attribute: Scan properties that are associated with a value.
Definition: cv.hpp:1962
MS_frag__z_ion
frag: z ion: Fragmentation information, type of product: z ion.
Definition: cv.hpp:3969
MS_Ascore
Ascore: Ascore software.
Definition: cv.hpp:6222
MS_MALDI_Synapt_G2_S_HDMS
MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition: cv.hpp:5574
MS_decoy_DB_details
decoy DB details: Details of decoy generation and database structure.
Definition: cv.hpp:4590
MS_TripleTOF_5600
TripleTOF 5600: AB SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer...
Definition: cv.hpp:3351
UNIMOD_Label_2H_10_
Label:2H(10): 2H(10) label.
Definition: cv.hpp:10608
MS_dpControl
dpControl: Bruker software for data acquisition.
Definition: cv.hpp:2676
MS_AXIMA_Performance_MALDI_TOF_TOF
AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS...
Definition: cv.hpp:2337
MS_Paragon__channel_to_use_as_denominator_in_ratios
Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which labe...
Definition: cv.hpp:7584
MS_binary_data_type
binary data type: Encoding type of binary data specifying the binary representation and precision...
Definition: cv.hpp:2007
UNIMOD_Glu__Met
Glu->Met: Glu->Met substitution.
Definition: cv.hpp:9999
UNIMOD_Label_13C_6__Dimethyl
Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
Definition: cv.hpp:9747
MS_DE
DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in deso...
Definition: cv.hpp:1020
MS_product_ion_mobility
product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectromet...
Definition: cv.hpp:6162
MS_Progenesis_peptide_raw_abundance
Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-M...
Definition: cv.hpp:5934
MS_accurate_mass
accurate mass: An experimentally determined mass that is can be to determine a unique elemental formu...
Definition: cv.hpp:837
MS_Andromeda_score
Andromeda:score: The probability based score of the Andromeda search engine.
Definition: cv.hpp:7305
UNIMOD_Acetyl
Acetyl: Acetylation.
Definition: cv.hpp:7854
UNIMOD_TMPP_Ac
TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative...
Definition: cv.hpp:9468
UNIMOD_NEMsulfurWater
NEMsulfurWater: N-ethylmaleimideSulfurWater.
Definition: cv.hpp:10671
MS_ProteinExtractor_PhenyxUniqueScore
ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide a...
Definition: cv.hpp:4575
UNIMOD_ESP
ESP: ESP-Tag light d0.
Definition: cv.hpp:8025
MS_identification_file_format
identification file format: Attribute describing an identification file format.
Definition: cv.hpp:6678
MS_group_PSMs_by_sequence
group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
Definition: cv.hpp:7779
UNIMOD_Xlink_DMP_de
Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.
Definition: cv.hpp:9843
UNIMOD_Tyr__Phe
Tyr->Phe: Tyr->Phe substitution.
Definition: cv.hpp:9276
UO_byte
byte: An information unit which is equal to 8 bits.
Definition: cv.hpp:11517
UNIMOD_DimethylamineGMBS
DimethylamineGMBS: Modified GMBS X linker for proteins.
Definition: cv.hpp:9660
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5400
UNIMOD_Acetyldeoxyhypusine
Acetyldeoxyhypusine: Acetyldeoxyhypusine.
Definition: cv.hpp:9879
MS_pulse_counting
pulse counting: Definition to do.
Definition: cv.hpp:528
MS_database_release_date_OBSOLETE
database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search datab...
Definition: cv.hpp:3396
MS_protein_group_list_attribute
protein group list attribute: Attribute describing a protein group list.
Definition: cv.hpp:6624
UO_absorbance_unit
absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light throug...
Definition: cv.hpp:11625
MS_SpectraST_dot_bias
SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks...
Definition: cv.hpp:4494
UNIMOD_VIEVYQEQTGG
VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
Definition: cv.hpp:9630
MS_cyclotron
cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged ...
Definition: cv.hpp:1272
MS_data_processing_start_time
data processing start time: The time that a data processing action was started.
Definition: cv.hpp:7596
MS_Bruker_BAF_nativeID_format
Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger. ...
Definition: cv.hpp:2835
MS_ms_level
ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
Definition: cv.hpp:1986
UNIMOD_Phosphopropargyl
Phosphopropargyl: Phospho-propargylamine.
Definition: cv.hpp:9705
UNIMOD_Trp__Gln
Trp->Gln: Trp->Gln substitution.
Definition: cv.hpp:10449
MS_MGF_raw_scans_OBSOLETE
MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw sca...
Definition: cv.hpp:4485
UNIMOD_Hep
Hep: Heptose.
Definition: cv.hpp:8778
MS_64_bit_float
64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2022
MS_fraction_identifier
fraction identifier: Identier string that describes the sample fraction. This identifier should conta...
Definition: cv.hpp:3117
MS_ProteomeDiscoverer_Number_of_input3_spectra
ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
Definition: cv.hpp:5445
MS_DirecTag
DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
Definition: cv.hpp:5001
UNIMOD_Val__Gln
Val->Gln: Val->Gln substitution.
Definition: cv.hpp:10404
MS_TargetAnalysis
TargetAnalysis: Bruker TargetAnalysis software.
Definition: cv.hpp:2730
MS_4000_QTRAP_OBSOLETE
4000 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
Definition: cv.hpp:3159
MS_contact_email
contact email: Email address of the contact person or organization.
Definition: cv.hpp:2265
UO_base_unit
base unit: A unit which is one of a particular measure to which all measures of that type can be rela...
Definition: cv.hpp:10959
UNIMOD_Arg__Asn
Arg->Asn: Arg->Asn substitution.
Definition: cv.hpp:10326
MS_protein_group_or_subset_relationship
protein group or subset relationship: Protein group or subset relationships.
Definition: cv.hpp:3609
UNIMOD_Gly__Val
Gly->Val: Gly->Val substitution.
Definition: cv.hpp:8991
MS_nier_johnson_geometry_OBSOLETE
nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection o...
Definition: cv.hpp:1296
UO_second
second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation correspo...
Definition: cv.hpp:10854
MS_Paragon__sample_type
Paragon: sample type: The Paragon method setting indicating the type of sample at the high level...
Definition: cv.hpp:7557
MS_stored_waveform_inverse_fourier_transform
stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-...
Definition: cv.hpp:1248
MS_desorption_electrospray_ionization
desorption electrospray ionization: Combination of electrospray and desorption ionization method that...
Definition: cv.hpp:6315
MS_PDA_spectrum_OBSOLETE
PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)...
Definition: cv.hpp:2370
UNIMOD_Phenylisocyanate
Phenylisocyanate: Phenyl isocyanate.
Definition: cv.hpp:8631
MS_TOPP_SpecLibSearcher
TOPP SpecLibSearcher: Identifies peptide MS/MS spectra by spectral matching with a searchable spectra...
Definition: cv.hpp:6849
MS_Progenesis_automatic_alignment
Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
Definition: cv.hpp:5850
MS_Sonar_Score
Sonar:Score: The Sonar score.
Definition: cv.hpp:4752
MS_ProteinScape_IntensityCoverage
ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calcul...
Definition: cv.hpp:4761
UNIMOD_Phe__Glu
Phe->Glu: Phe->Glu substitution.
Definition: cv.hpp:10029
MS_FIB
FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ion...
Definition: cv.hpp:1770
MS_ProteomeDiscoverer_Highest_Charge_State
ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out...
Definition: cv.hpp:5181
MS_SCiLS_software
SCiLS software: SCiLS software for data acquisition and analysis.
Definition: cv.hpp:7440
MS_MAT900XP_Trap
MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
Definition: cv.hpp:729
MS_nanospray_inlet
nanospray inlet: Nanospray Inlet.
Definition: cv.hpp:1902
MS_peak_list_raw_scans
peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list...
Definition: cv.hpp:2928
MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions
ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching...
Definition: cv.hpp:5484
MS_Single_Stage_Mass_Spectrometry
Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment ...
Definition: cv.hpp:2208
UNIMOD_Ala__Gly
Ala->Gly: Ala->Gly substitution.
Definition: cv.hpp:8898
MS_search_engine_input_parameter
search engine input parameter: Search engine input parameter.
Definition: cv.hpp:6570
MS_Acquity_UPLC_PDA
Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
Definition: cv.hpp:3000
UNIMOD_AEC_MAEC
AEC-MAEC: Aminoethylcysteine.
Definition: cv.hpp:8760
MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions
ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching...
Definition: cv.hpp:5487
MS_PIA_workflow_parameter
PIA workflow parameter: A parameter set for a single PIA analysis.
Definition: cv.hpp:7458
UO_kilogram_per_liter
kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by t...
Definition: cv.hpp:11340
MS_frag__v_ion
frag: v ion: Fragmentation information, type of product: v ion.
Definition: cv.hpp:3990
MS_frag__c_ion___NH3
frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
Definition: cv.hpp:4794
MS_PureDisk
PureDisk: BrukerPureDisk software.
Definition: cv.hpp:2721
UO_conduction_unit
conduction unit: A unit which represents a standard measurement of the transmission of an entity thro...
Definition: cv.hpp:11601
UNIMOD_Delta_H_4_C_2_
Delta:H(4)C(2): Acetaldehyde +28.
Definition: cv.hpp:8286
UNIMOD_Tyr__His
Tyr->His: Tyr->His substitution.
Definition: cv.hpp:9285
MS_HCTultra
HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2610
MS_FDRScore_for_proteins
FDRScore for proteins: FDRScore for proteins specifically obtained for distinct combinations of singl...
Definition: cv.hpp:7386
MS_resolution_type_OBSOLETE
resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either...
Definition: cv.hpp:138
MS_normalized_peptide_value
normalized peptide value: Normalized peptide value.
Definition: cv.hpp:5805
UNIMOD_Thr__Trp
Thr->Trp: Thr->Trp substitution.
Definition: cv.hpp:10383
UNIMOD_CarboxymethylDTT
CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
Definition: cv.hpp:9558
MS_counts_reporting
counts reporting: FeatureList of spectral counts.
Definition: cv.hpp:6654
MS_collision_energy_ramp_start
collision energy ramp start: Collision energy at the start of the collision energy ramp...
Definition: cv.hpp:6324
MS_sliding_average_smoothing
sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each poin...
Definition: cv.hpp:2889
UNIMOD_Arg__Npo
Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
Definition: cv.hpp:9483
MS_protein_group_level_p_value
protein group-level p-value: Estimation of the p-value for protein groups.
Definition: cv.hpp:7404
UNIMOD_PhosphoribosyldephosphoCoA
PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
Definition: cv.hpp:8592
MS_PeakPicker_OBSOLETE
PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
Definition: cv.hpp:2805
UO_fraction
fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denomin...
Definition: cv.hpp:11391
MS_ProteoAnnotator_count_alternative_peptides
ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to no...
Definition: cv.hpp:7716
MS_mass_spectrometer
mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of io...
Definition: cv.hpp:1287
UNIMOD_Glu__Lys
Glu->Lys: Glu->Lys substitution.
Definition: cv.hpp:8955
MS_TOPP_noise_filter
TOPP noise filter: Noise filter component of the TOPP software.
Definition: cv.hpp:6681
UNIMOD_Arg
Arg: Addition of arginine due to transpeptidation.
Definition: cv.hpp:10581
MS_multichannel_plate
multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array o...
Definition: cv.hpp:510
MS_protein_modifications
protein modifications: Encoding of modifications of the protein sequence from the specified accession...
Definition: cv.hpp:3354
MS_ProteomeDiscoverer_SN_Threshold
ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
Definition: cv.hpp:5094
MS_eV_OBSOLETE
eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle contain...
Definition: cv.hpp:618
MS_selected_ion_m_z
selected ion m/z: Mass-to-charge ratio of an selected ion.
Definition: cv.hpp:2748
UO_parts_per_quadrillion
parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given sub...
Definition: cv.hpp:11334
UNIMOD_Phe__Met
Phe->Met: Phe->Met substitution.
Definition: cv.hpp:10041
MS_regular_expressions_for_a_GUID
).
Definition: cv.hpp:6981
MS_Phenyx_NumberOfMC
Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
Definition: cv.hpp:4440
UO_luminance_unit
luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given are...
Definition: cv.hpp:10983
MS_Percolator_Validation_based_on
Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validatio...
Definition: cv.hpp:6567
UNIMOD_ESP_2H_10_
ESP:2H(10): ESP-Tag heavy d10.
Definition: cv.hpp:8028
UO_luminous_flux_unit
luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
Definition: cv.hpp:11175
MS_sample_mass
sample mass: Total mass of sample used.
Definition: cv.hpp:111
UNIMOD_Isopropylphospho
Isopropylphospho: O-Isopropylphosphorylation.
Definition: cv.hpp:8514
MS_ion_to_photon_detector
ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that...
Definition: cv.hpp:1467
UNIMOD_Hydroxycinnamyl
Hydroxycinnamyl: Hydroxycinnamyl.
Definition: cv.hpp:8619
MS_Bruker_Agilent_YEP_format
Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
Definition: cv.hpp:2157
id_list parentsIsA
Definition: cv.hpp:11718
MS_LCQ_Fleet
LCQ Fleet: LCQ Fleet.
Definition: cv.hpp:2193
MS_OMEGA_2001
OMEGA-2001: IonSpec OMEGA-2001 MS.
Definition: cv.hpp:753
MS_TDC
TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital repr...
Definition: cv.hpp:534
MS_p_value
p-value: P-value as result of one of the processing steps described. Specify in the description...
Definition: cv.hpp:6507
MS_transition_predicted_by_informatic_analysis
transition predicted by informatic analysis: The transition has been predicted by informatics softwar...
Definition: cv.hpp:3294
UNIMOD_NBS_13C_6_
NBS:13C(6): Shimadzu NBS-13C.
Definition: cv.hpp:8199
MS_param__b_ion_H2O_DEPRECATED
param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
Definition: cv.hpp:3756
UNIMOD_Asn__Lys
Asn->Lys: Asn->Lys substitution.
Definition: cv.hpp:9096
UNIMOD_Cation_Ni_II_
Cation:Ni[II]: Replacement of 2 protons by nickel.
Definition: cv.hpp:9687
UNIMOD_Dioxidation
Dioxidation: Dihydroxy.
Definition: cv.hpp:8670
MS_IsobariQ
IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data...
Definition: cv.hpp:6918
MS_FDRScore_OBSOLETE
FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engi...
Definition: cv.hpp:5877
UO_hertz
hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second...
Definition: cv.hpp:11142
MS_Voyager_DE_STR
Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
Definition: cv.hpp:819
MS_nth_generation_product_ion_spectrum_OBSOLETE
nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which t...
Definition: cv.hpp:1434
MS_label_free_raw_feature_quantitation
label-free raw feature quantitation: Label-free raw feature quantitation.
Definition: cv.hpp:6342
UNIMOD_Lys__Cys
Lys->Cys: Lys->Cys substitution.
Definition: cv.hpp:10146
MS_filter_string
filter string: A string unique to Thermo instrument describing instrument settings for the scan...
Definition: cv.hpp:1989
UNIMOD_Tyr__Xle
Tyr->Xle: Tyr->Leu/Ile substitution.
Definition: cv.hpp:10494
UNIMOD_Cys__Tyr
Cys->Tyr: Cys->Tyr substitution.
Definition: cv.hpp:8916
MS_metabolic_labelling__natural_N__mainly_14N_
metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N)...
Definition: cv.hpp:6477
MS_SpectraST_dot
SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
Definition: cv.hpp:4491
MS_no_compression
no compression: No Compression.
Definition: cv.hpp:2184
MS_peak_intensity
peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum...
Definition: cv.hpp:240
MS_tube_lens_voltage
tube lens voltage: Potential difference setting of the tube lens in volts.
Definition: cv.hpp:3180
UNIMOD_Nitrosyl
Nitrosyl: S-nitrosylation.
Definition: cv.hpp:8331
MS_SEQUEST_SequencePartialFilter
SEQUEST:SequencePartialFilter:
Definition: cv.hpp:3441
MS_peptide_ratio
peptide ratio: Peptide ratio.
Definition: cv.hpp:3702
UNIMOD_Cation_Fe_II_
Cation:Fe[II]: Replacement of 2 protons by iron.
Definition: cv.hpp:9684
UNIMOD_Palmitoleyl
Palmitoleyl: Palmitoleyl.
Definition: cv.hpp:8682
MS_ACQUITY_UPLC
ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
Definition: cv.hpp:5538
MS_OMSSA
OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
Definition: cv.hpp:4671
MS_UltroTOF_Q
UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
Definition: cv.hpp:4863
UNIMOD_Label_15N_1_
Label:15N(1): 15N(1).
Definition: cv.hpp:9762
MS_Byonic_PEP
Byonic:PEP: Byonic posterior error probability.
Definition: cv.hpp:7083
MS_modification_specificity_protein_C_term
modification specificity protein C-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:6465
UNIMOD_Label_13C_1_2H_3__Oxidation
Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
Definition: cv.hpp:9534
UNIMOD_Lys__Glu
Lys->Glu: Lys->Glu substitution.
Definition: cv.hpp:9033
UNIMOD_Didehydro
Didehydro: 2-amino-3-oxo-butanoic_acid.
Definition: cv.hpp:8607
MS_search_time_taken
search time taken: The time taken to complete the search in seconds.
Definition: cv.hpp:3447
UNIMOD_NDA
NDA: Naphthalene-2,3-dicarboxaldehyde.
Definition: cv.hpp:8754
MS_intensity_array
intensity array: A data array of intensity values.
Definition: cv.hpp:1998
UNIMOD_FMNH
FMNH: Flavin mononucleotide.
Definition: cv.hpp:8625
MS_peptide_spectrum_match_scoring_algorithm
peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a ...
Definition: cv.hpp:6147
MS_protein_description
protein description: The protein description line from the sequence entry in the source database FAST...
Definition: cv.hpp:3570
UNIMOD_His__Val
His->Val: His->Val substitution.
Definition: cv.hpp:10119
UNIMOD_4AcAllylGal
4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine...
Definition: cv.hpp:9576
MS_ion_energy_loss_spectrum_OBSOLETE
ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a...
Definition: cv.hpp:1698
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies
Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass ...
Definition: cv.hpp:99
MS_ion_selection_attribute
ion selection attribute: Ion selection properties that are associated with a value.
Definition: cv.hpp:1803
MS_feature_attribute
feature attribute: Attribute describing a feature.
Definition: cv.hpp:5739
MS_ProteomeDiscoverer_max_number_of_same_modifs
ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per ...
Definition: cv.hpp:7272
UNIMOD_Cys__Phe
Cys->Phe: Cys->Phe substitution.
Definition: cv.hpp:8907
MS_FindPairs
FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
Definition: cv.hpp:6480
UO_dimensionless_unit
dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a nume...
Definition: cv.hpp:11376
MS_Paragon__modified_data_dictionary_or_parameter_translation
Paragon: modified data dictionary or parameter translation: This metric detects if any changes have b...
Definition: cv.hpp:7590
MS_instrument_serial_number
instrument serial number: Serial Number of the instrument.
Definition: cv.hpp:2040
MS_Proteome_Discoverer
Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins...
Definition: cv.hpp:2469
UNIMOD_pupylation
pupylation: Addition of GGE.
Definition: cv.hpp:10539
MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant...
Definition: cv.hpp:987
UNIMOD_FP_Biotin
FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
Definition: cv.hpp:8439
MS_SEQUEST_sort_by_dCn
SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation ...
Definition: cv.hpp:3471
UO_newton
newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass...
Definition: cv.hpp:11148
MS_protein_group_level_confidence
protein group-level confidence: Estimation of the global confidence of protein groups.
Definition: cv.hpp:7674
MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions
ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative fac...
Definition: cv.hpp:5319
UNIMOD_iTRAQ8plex_13C_6_15N_2_
iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
Definition: cv.hpp:9348
MS_charge_stripping_reaction
charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive ch...
Definition: cv.hpp:1668
UO_kilodalton
kilodalton: A mass unit which is equal to one thousand daltons.
Definition: cv.hpp:11484
std::string fullName
the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
Definition: cv.hpp:11690
MS_MALDI_LTQ_XL
MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
Definition: cv.hpp:2445
MS_Agilent_software
Agilent software: Agilent software for data acquisition and analysis.
Definition: cv.hpp:2583
MS_TOPP_MapRTTransformer
TOPP MapRTTransformer: Applies retention time transformations to maps.
Definition: cv.hpp:6807
MS_electron_transfer_dissociation
electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmen...
Definition: cv.hpp:2295
MS_distinct_peptide_level_local_FDR
distinct peptide-level local FDR: Estimation of the local false discovery rate for distinct peptides ...
Definition: cv.hpp:7368
MS_absolute_quantity
absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample...
Definition: cv.hpp:3717
UNIMOD_Delta_H_4_C_3_O_1_
Delta:H(4)C(3)O(1): Acrolein addition +56.
Definition: cv.hpp:8253
MS_V8_DE
V8-DE: Cleavage agent V8-DE.
Definition: cv.hpp:4194
MS_time_delayed_fragmentation_spectrum
time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a tim...
Definition: cv.hpp:2904
MS_PA
PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy c...
Definition: cv.hpp:948
UNIMOD_DNCB_hapten
DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
Definition: cv.hpp:10677
MS_photodissociation
photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one...
Definition: cv.hpp:1728
UNIMOD_Lys__Thr
Lys->Thr: Lys->Thr substitution.
Definition: cv.hpp:9027
UNIMOD_2_succinyl
2-succinyl: S-(2-succinyl) cysteine.
Definition: cv.hpp:9699
MS_SHA_1
SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Secu...
Definition: cv.hpp:2163
MS_ProteomeDiscoverer_Peptide_NTerminus
ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used duri...
Definition: cv.hpp:5292
MS_SEQUEST_FormatAndLinks
SEQUEST:FormatAndLinks:
Definition: cv.hpp:3666
UNIMOD_Hex1HexNAc1
Hex1HexNAc1: Hex1HexNAc1.
Definition: cv.hpp:9441
UNIMOD_Gln__Asn
Gln->Asn: Gln->Asn substitution.
Definition: cv.hpp:10299
MS_electromagnetic_radiation_spectrum
electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as ...
Definition: cv.hpp:2952
UNIMOD_Val__Arg
Val->Arg: Val->Arg substitution.
Definition: cv.hpp:10407
MS_number_of_product_ion_observations
number of product ion observations: The number of times the specific product ion has been observed in...
Definition: cv.hpp:6969
UNIMOD_Trp__Met
Trp->Met: Trp->Met substitution.
Definition: cv.hpp:10440
MS_TOPP_MapAlignerIdentification
TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common pepti...
Definition: cv.hpp:6732
UNIMOD_Cys__Arg
Cys->Arg: Cys->Arg substitution.
Definition: cv.hpp:8919
MS_MS_GF_SpecEValue
MS-GF:SpecEValue: MS-GF spectral E-value.
Definition: cv.hpp:6447
MS_MaxQuant_peptide_counts__all_
MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
Definition: cv.hpp:5949
MS_m_z_array
m/z array: A data array of m/z values.
Definition: cv.hpp:1995
UNIMOD_Label_18O_2_
Label:18O(2): O18 label at both C-terminal oxygens.
Definition: cv.hpp:8226
MS_OMSSA_e_value_threshold
OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
Definition: cv.hpp:4587
MS_decoy_DB_from_EST_OBSOLETE
decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database...
Definition: cv.hpp:4134
MS_MRM_OBSOLETE
MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring...
Definition: cv.hpp:453
MS_precursor_ion_scan_OBSOLETE
precursor ion scan: The specific scan function or process that will record a precursor ion spectrum...
Definition: cv.hpp:456
MS_principal_ion
principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of ...
Definition: cv.hpp:1539
MS_orthogonal_extraction
orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel int...
Definition: cv.hpp:1359
MS_OmniFlex
OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
Definition: cv.hpp:756
UO_cubic_centimeter
cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3]...
Definition: cv.hpp:11115
MS_target_inclusion_exclusion_priority
target inclusion exclusion priority: A priority setting specifying whether included or excluded targe...
Definition: cv.hpp:3312
MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE
ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
Definition: cv.hpp:5211
UO_gray
gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one ...
Definition: cv.hpp:11223
MS_Phenyx_Default_Parent_Charge
Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
Definition: cv.hpp:4380
UNIMOD_Xle__Cys
Xle->Cys: Leu/Ile->Cys substitution.
Definition: cv.hpp:10128
MS_Mascot_Instrument
Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
Definition: cv.hpp:5223
MS_ATAQS
ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the result...
Definition: cv.hpp:3330
MS_Lys_C_P
Lys-C/P: Proteinase Lys-C/P.
Definition: cv.hpp:4182
MS_PSM_level_global_confidence
PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches...
Definition: cv.hpp:7686
MS_confident_distinct_peptide_sequences
confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.
Definition: cv.hpp:3600
MS_mass_trace_reporting__rectangles
mass trace reporting: rectangles: The mass trace of the features of this feature list specifies recta...
Definition: cv.hpp:5733
MS_autoflex_II_TOF_TOF
autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
Definition: cv.hpp:4899
UNIMOD_azole
azole: Formation of five membered aromatic heterocycle.
Definition: cv.hpp:10707
MS_ambiguous_residues
ambiguous residues: Children of this term describe ambiguous residues.
Definition: cv.hpp:4326
UNIMOD_Hex_5_HexNAc_4_
Hex(5)HexNAc(4): Biantennary.
Definition: cv.hpp:8409
UNIMOD_Propionyl
Propionyl: Propionate labeling reagent light form (N-term & K).
Definition: cv.hpp:7995
MS_Scaffold__Minimum_Protein_Probability
Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted...
Definition: cv.hpp:4968
UO_micromolal
micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m...
Definition: cv.hpp:11034
UNIMOD_Ala__Lys
Ala->Lys: Ala->Lys substitution.
Definition: cv.hpp:9897
UNIMOD_Glucuronyl
Glucuronyl: N-glucuronylation.
Definition: cv.hpp:7986
MS_frag__y_ion___H2O
frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
Definition: cv.hpp:3942
MS_source_attribute
source attribute: Property of a source device that need a value.
Definition: cv.hpp:1893
MS_CF_FAB
CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte...
Definition: cv.hpp:282
MS_Profound_z_value
Profound:z value: The Profound z value.
Definition: cv.hpp:4740
MS_average_mass
average mass: The mass of an ion or molecule calculated using the average mass of each element weight...
Definition: cv.hpp:840
MS_monoisotopic_mass
monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isot...
Definition: cv.hpp:915
UO_angular_acceleration_unit
angular acceleration unit: A unit which is a standard measure of the rate of change of angular veloci...
Definition: cv.hpp:10974
UNIMOD_Lys__AminoadipicAcid
Lys->AminoadipicAcid: Alpha-amino adipic acid.
Definition: cv.hpp:8559
UNIMOD_mTRAQ_13C_3_15N_1_
mTRAQ:13C(3)15N(1): MTRAQ medium.
Definition: cv.hpp:9546
UNIMOD_Cyano
Cyano: Cyano.
Definition: cv.hpp:8703
UO_gram_per_cubic_centimeter
gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided b...
Definition: cv.hpp:11076
MS_flexImaging
flexImaging: Bruker software for data analysis.
Definition: cv.hpp:2682
MS_Surveyor_PDA
Surveyor PDA: Surveyor PDA.
Definition: cv.hpp:2379
MS_number_of_decoy_sequences
number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach i...
Definition: cv.hpp:7602
UNIMOD_MercaptoEthanol
MercaptoEthanol: 2-OH-ethyl thio-Ser.
Definition: cv.hpp:9621
MS_IsoProbe
IsoProbe: Waters IsoProbe MS.
Definition: cv.hpp:702
MS_ProteomeDiscoverer_phosphoRS_site_probability
ProteomeDiscoverer:phosphoRS site probability: Estimate of the probability that the respective site i...
Definition: cv.hpp:6177
MS_frag__a_ion
frag: a ion: Fragmentation information, type of product: a ion.
Definition: cv.hpp:3966
MS_constant_neutral_loss_scan_OBSOLETE
constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement...
Definition: cv.hpp:1377
MS_SEQUEST_SQT_format
SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
Definition: cv.hpp:4929
UNIMOD_Dipyrrolylmethanemethyl
Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
Definition: cv.hpp:8646
MS_z
z (charge state): The charge state of the ion, single or multiple and positive or negatively charged...
Definition: cv.hpp:237
MS_Bruker_Daltonics_esquire_series
Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
Definition: cv.hpp:4845
MS_TSQ_Quantum_Ultra_AM
TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
Definition: cv.hpp:2745
MS_mass_resolving_power_OBSOLETE
mass resolving power: In a mass spectrum, the observed mass divided by the difference between two mas...
Definition: cv.hpp:951
MS_increasing_m_z_scan
increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers...
Definition: cv.hpp:432
MS_detector_potential
detector potential: Detector potential difference in volts.
Definition: cv.hpp:7107
MS_SEQUEST_ShowFragmentIons
SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
Definition: cv.hpp:3450
MS_ion_attribute
ion attribute: Ion properties that are associated with a value.
Definition: cv.hpp:1974
MS_collision_energy
collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting i...
Definition: cv.hpp:249
MS_32_bit_float
32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2016
UNIMOD_Methyl_Deamidated
Methyl+Deamidated: Deamidation followed by a methylation.
Definition: cv.hpp:8850
MS_value_between_0_and_1_inclusive
value between 0 and 1 inclusive: Value range for probabilities.
Definition: cv.hpp:7206
MS_wavelength_OBSOLETE
wavelength: The distance between two peaks of the emitted laser beam.
Definition: cv.hpp:3072
MS_frag__precursor_ion
frag: precursor ion: Fragmentation information, type of product: precursor ion.
Definition: cv.hpp:4815
MS_box_smoothing
box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two o...
Definition: cv.hpp:2883
MS_Isotopomeric_ion
Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their p...
Definition: cv.hpp:1521
MS_peak_targeting_suitability_rank
peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suit...
Definition: cv.hpp:3273
UO_electrical_conduction_unit
electrical conduction unit: A unit which represents a standard measurement of the movement of electri...
Definition: cv.hpp:11604
MS_LCMS_2010A
LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
Definition: cv.hpp:2325
UNIMOD_iTRAQ8plex
iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
Definition: cv.hpp:9345
UO_roentgen
roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive an...
Definition: cv.hpp:11229
MS_protein_group_level_probability
protein group-level probability: Probability that at least one of the members of a group of protein s...
Definition: cv.hpp:7419
MS_SEQUEST_summary
SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
Definition: cv.hpp:4008
UNIMOD_Gly__Ser
Gly->Ser: Gly->Ser substitution.
Definition: cv.hpp:8982
MS_SEQUEST_NormalizeXCorrValues
SEQUEST:NormalizeXCorrValues:
Definition: cv.hpp:3423
UNIMOD_Tyr__Gln
Tyr->Gln: Tyr->Gln substitution.
Definition: cv.hpp:10479
MS_Varian_instrument_model
Varian instrument model: Varian instrument model.
Definition: cv.hpp:1914
MS_fragment_ion_intensity
fragment ion intensity (product ion intensity): The intensity of a single product ion...
Definition: cv.hpp:3957
MS_TOPP_CompNovoCID
TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-ind...
Definition: cv.hpp:6825
MS_PTM_scoring_algorithm_version
PTM scoring algorithm version: Version of the post-translational modification scoring algorithm...
Definition: cv.hpp:6180
MS_SEQUEST_Fast
SEQUEST:Fast:
Definition: cv.hpp:3684
UNIMOD_His__Asp
His->Asp: His->Asp substitution.
Definition: cv.hpp:8481
MS_Progenesis_peptide_count
Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
Definition: cv.hpp:5940
UNIMOD_Ethanedithiol
Ethanedithiol: EDT.
Definition: cv.hpp:8247
UNIMOD_Ser__Gln
Ser->Gln: Ser->Gln substitution.
Definition: cv.hpp:10353
UNIMOD_Pro__Xle
Pro->Xle: Pro->Leu/Ile substitution.
Definition: cv.hpp:9129
MS_ProteinPilot_Software
ProteinPilot Software: AB SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant...
Definition: cv.hpp:2505
MS_analog_digital_converter
analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electron...
Definition: cv.hpp:522
MS_mzML_unique_identifier
mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
Definition: cv.hpp:4836
MS_NBRF_PIR
NBRF PIR: The NBRF PIR was used as format.
Definition: cv.hpp:4308
UNIMOD_Trimethyl_2H_9_
Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
Definition: cv.hpp:10734
MS_Negative_Ion_chemical_ionization
Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions...
Definition: cv.hpp:1170
MS_protein_group_level_e_value
protein group-level e-value: Estimation of the e-value for protein groups.
Definition: cv.hpp:7407
UNIMOD_Met_loss
Met-loss: Removal of initiator methionine from protein N-terminus.
Definition: cv.hpp:9408
MS_protein_group_level_q_value
protein group-level q-value: Estimation of the q-value for protein groups.
Definition: cv.hpp:7410
MS_co_author
co-author: One of a set of authors associated with a publication or release.
Definition: cv.hpp:6393
UNIMOD_HexNAc_2_
HexNAc(2): HexNAc2.
Definition: cv.hpp:8136
MS_Shimadzu_MALDI_7090
Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
Definition: cv.hpp:7437
UNIMOD_Tyr__Val
Tyr->Val: Tyr->Val substitution.
Definition: cv.hpp:10488
UNIMOD_ethylamino
ethylamino: Ethyl amino.
Definition: cv.hpp:9618
MS_product_interpretation_rank
product interpretation rank: The integer rank given an interpretation of an observed product ion...
Definition: cv.hpp:3333
MS_6140_Quadrupole_LC_MS
6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1857
MS_TOPP_FeatureLinkerLabeled
TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map...
Definition: cv.hpp:6813
MS_external_reference_keyword
external reference keyword: Free text attribute that can enrich the information about an entity...
Definition: cv.hpp:6030
MS_Bruker_XML_format
Bruker XML format: Bruker data exchange XML format.
Definition: cv.hpp:4017
UNIMOD_Propiophenone
Propiophenone: Propiophenone.
Definition: cv.hpp:10632
MS_TOPP_spectra_filter
TOPP spectra filter: Spectra filter component of the TOPP software.
Definition: cv.hpp:6699
UO_magnetic_flux_density_unit
magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field...
Definition: cv.hpp:11499
MS_consensus_result
consensus result: Indicates a consensus result from several search engine runs.
Definition: cv.hpp:7236
MS_FileMerger
FileMerger: Merges several MS files into one file.
Definition: cv.hpp:2790
MS_PSM_level_global_FNR
PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches...
Definition: cv.hpp:7683
MS_DB_PI_filter
DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI)...
Definition: cv.hpp:3414
MS_Conversion_to_mzXML
Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format...
Definition: cv.hpp:2091
MS_ProteinExtractor_SequestUniqueScore
ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide ...
Definition: cv.hpp:4551
MS_WIFF_nativeID_format
WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeIn...
Definition: cv.hpp:2829
MS_CAD
CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation...
Definition: cv.hpp:591
MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions
ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5328
MS_t_test
t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.
Definition: cv.hpp:6501
MS_minimum_information_standard
minimum information standard: A specification of a minimum amount of information needed to reproduce ...
Definition: cv.hpp:3252
MS_radial_ejection_linear_ion_trap
radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the...
Definition: cv.hpp:396
UNIMOD_MurNAc
MurNAc: N-Acetylmuramic acid.
Definition: cv.hpp:10812
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr paramete...
Definition: cv.hpp:5370
MS_Conversion_to_dta
Conversion to dta: Conversion to dta format.
Definition: cv.hpp:2739
MS_APEX_value
APEX value: The APEX value of protein abundance, produced from the APEX software. ...
Definition: cv.hpp:5973
MS_TOPP_InspectAdapter
TOPP InspectAdapter: Identifies MS/MS spectra using the external program Inspect. ...
Definition: cv.hpp:6831
UO_rad
rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
Definition: cv.hpp:11226
MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification
ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used durin...
Definition: cv.hpp:5265
MS_signal_to_noise_array
signal to noise array: A data array of signal-to-noise values.
Definition: cv.hpp:2004
UNIMOD_Lys__Allysine
Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
Definition: cv.hpp:8490
MS_ProteinScape_PFFSolverScore
ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
Definition: cv.hpp:4758
MS_modified_nucleic_acid_sequence
modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.
Definition: cv.hpp:6375
MS_Waters_raw_format
Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acqu...
Definition: cv.hpp:2031
MS_peptide_level_scoring
peptide-level scoring: Peptide-level scoring performed.
Definition: cv.hpp:7761
UNIMOD_Cresylphosphate
Cresylphosphate: O-toluyl-phosphorylation.
Definition: cv.hpp:10515
MS_fringing_field
fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
Definition: cv.hpp:1338
UNIMOD_Trp__Ser
Trp->Ser: Trp->Ser substitution.
Definition: cv.hpp:9261
UO_kilogram_per_hectare
kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divid...
Definition: cv.hpp:11667
MS_ProteinScape_SequestMetaScore
ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SE...
Definition: cv.hpp:4764
UNIMOD_Label_2H_4_13C_1_
Label:2H(4)13C(1): Label:2H(4)13C(1).
Definition: cv.hpp:10611
UNIMOD_Phe__Arg
Phe->Arg: Phe->Arg substitution.
Definition: cv.hpp:10053
MS_ProteomeDiscoverer_Maximum_Peptides_Output
ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum...
Definition: cv.hpp:5280
MS_MaxQuant_Phospho__STY__Probabilities
MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software...
Definition: cv.hpp:6210
UNIMOD_His__Lys
His->Lys: His->Lys substitution.
Definition: cv.hpp:10107
UNIMOD_Ahx2_Hsl
Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
Definition: cv.hpp:9816
MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE
ProteomeDiscoverer:Source Files old: Input pepXML files (old).
Definition: cv.hpp:5472
MS_Spectrum_Mill_for_MassHunter_Workstation
Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of...
Definition: cv.hpp:2577
MS_protein_short_name
protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
Definition: cv.hpp:3198
MS_MaxQuant_PEP
MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
Definition: cv.hpp:5958
MS_SQID_protein_score
SQID:protein score: The SQID result 'protein score'.
Definition: cv.hpp:5922
MS_ProteomeDiscoverer_Dynamic_Modifications
ProteomeDiscoverer:Dynamic Modifications: Determine dynamic post-translational modifications (PTMs)...
Definition: cv.hpp:5187
UO_picomolar
picomolar: A unit of molarity which is equal to 10^[-12] M.
Definition: cv.hpp:11022
UNIMOD_EQAT
EQAT: EAPTA d0.
Definition: cv.hpp:8238
MS_four_sample_run
four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
Definition: cv.hpp:5718
MS_Percolator
Percolator: Percolator.
Definition: cv.hpp:4716
UNIMOD_AEC_MAEC_2H_4_
AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
Definition: cv.hpp:9438
MS_solution
solution: State if the sample is in solution form.
Definition: cv.hpp:267
MS_PIA
PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis...
Definition: cv.hpp:7452
UNIMOD_Label_13C_9_15N_1_
Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
Definition: cv.hpp:8316
MS_search_tolerance_specification
search tolerance specification: Specification of the search tolerance.
Definition: cv.hpp:4473
MS_LTQ_Velos
LTQ Velos: Thermo Scientific LTQ Velos MS.
Definition: cv.hpp:3108
UNIMOD_C8_QAT
C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
Definition: cv.hpp:8820
UNIMOD_Label_2H_3_
Label:2H(3): Trideuteration.
Definition: cv.hpp:8304
MS_post_source_decay
post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product...
Definition: cv.hpp:603
MS_AB_SCIEX_instrument_model
AB SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems...
Definition: cv.hpp:540
MS_SEQUEST_SelectDefault
SEQUEST:SelectDefault:
Definition: cv.hpp:3738
UNIMOD_DFDNB
DFDNB: Addition of DFDNB crosslinker.
Definition: cv.hpp:9465
UNIMOD_OxProBiotin
OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:8067
UNIMOD_Glu__Pro
Glu->Pro: Glu->Pro substitution.
Definition: cv.hpp:10005
UNIMOD_Archaeol
Archaeol: S-diphytanylglycerol diether.
Definition: cv.hpp:8628
UNIMOD_Carbofuran
Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
Definition: cv.hpp:9729
MS_PSI_mzData_format
PSI mzData format: Proteomics Standards Inititative mzData file format.
Definition: cv.hpp:2148
MS_TOPP_MapAlignerSpectrum
TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment...
Definition: cv.hpp:6738
MS_PROTEINEER_LC
PROTEINEER-LC: Bruker PROTEINEER-LC software.
Definition: cv.hpp:2715
MS_MS_MS_in_Time
MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a singl...
Definition: cv.hpp:1419
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before...
Definition: cv.hpp:6531
MS_ProteomeDiscoverer_automatic_workload
ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level...
Definition: cv.hpp:7245
MS_4000_QTRAP
4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
Definition: cv.hpp:624
MS_Exactive
Exactive: Thermo Scientific Exactive MS.
Definition: cv.hpp:2466
MS_protein_list_attribute
protein list attribute: Attribute describing a protein list.
Definition: cv.hpp:6630
MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides
Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and s...
Definition: cv.hpp:4215
UO_candela
candela: A luminous intensity unit which equal to the luminous intensity, in a given direction...
Definition: cv.hpp:10866
MS_ProteomeDiscoverer_Strict_Score_Threshold
ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring...
Definition: cv.hpp:7425
MS_IRMPD
IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates ...
Definition: cv.hpp:1116
UNIMOD_Trp__Lys
Trp->Lys: Trp->Lys substitution.
Definition: cv.hpp:10437
MS_stainless_steel_plate
stainless steel plate: Stainless steel plate.
Definition: cv.hpp:6078
MS_tag_search
tag search: A sequence tag search.
Definition: cv.hpp:3552
MS_micrOTOF
micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
Definition: cv.hpp:2622
UO_molal
molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram o...
Definition: cv.hpp:11028
MS_ProteinScape_SearchResultId
ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape d...
Definition: cv.hpp:4731
UNIMOD_ICDID
ICDID: Isotope-Coded Dimedone light form.
Definition: cv.hpp:9822
UNIMOD_Pentylamine
Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
Definition: cv.hpp:9450
MS_spectrum_instrument_description_OBSOLETE
spectrum instrument description: Terms used to describe the spectrum.
Definition: cv.hpp:1818
MS_source_file
source file (raw data file): Describes the type of file and its content.
Definition: cv.hpp:2190
UNIMOD_dHex_1_Hex_1_
dHex(1)Hex(1): Hex1dHex1.
Definition: cv.hpp:10725
UNIMOD_Nmethylmaleimide
Nmethylmaleimide: Nmethylmaleimide.
Definition: cv.hpp:8418
UNIMOD_CAMthiopropanoyl
CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
Definition: cv.hpp:8370
MS_LightSight_Software
LightSight Software: AB SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification...
Definition: cv.hpp:2502
UO_cubic_meter
cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length...
Definition: cv.hpp:11112
UO_length_unit
length unit: A unit which is a standard measure of the distance between two points.
Definition: cv.hpp:10827
MS_Byonic__Peptide_AbsLogProb2D
Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior e...
Definition: cv.hpp:7224
MS_Bruker_Daltonics_BioTOF_series
Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
Definition: cv.hpp:4851
MS_product_ion_m_z_delta
product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion m...
Definition: cv.hpp:3264
MS_Shimadzu_instrument_model
Shimadzu instrument model: Shimadzu corporation instrument model.
Definition: cv.hpp:549
MS_time_array
time array: A data array of relative time offset values from a reference time.
Definition: cv.hpp:2286
UNIMOD_SPITC
SPITC: 4-sulfophenyl isothiocyanate.
Definition: cv.hpp:8301
MS_charge_induced_fragmentation
charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjac...
Definition: cv.hpp:1659
MS_TSQ_Quantum
TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
Definition: cv.hpp:804
UNIMOD_Asn__Arg
Asn->Arg: Asn->Arg substitution.
Definition: cv.hpp:10239
UNIMOD_Triiodothyronine
Triiodothyronine: Triiodo.
Definition: cv.hpp:8598
MS_Paragon_input_parameter
Paragon input parameter: Search engine input parameters specific to Paragon.
Definition: cv.hpp:7554
MS_multidimensional_chromatography_modulation_description
multidimensional chromatography modulation description: Multidimensional chromatography modulation de...
Definition: cv.hpp:6543
UNIMOD_Delta_S__1_Se_1_
Delta:S(-1)Se(1): Selenium replaces sulfur.
Definition: cv.hpp:8193
MS_Acquity_TQD
Acquity TQD: Waters quadrupole based Acquity TQD.
Definition: cv.hpp:5619
MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE
decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database...
Definition: cv.hpp:4140
UO_density_unit
density unit: A unit which is a standard measure of the influence exerted by some mass...
Definition: cv.hpp:11364
MS_fed_supply_electrospray
fed supply electrospray: The sprayer is continuously fed with sample.
Definition: cv.hpp:6090
UNIMOD_dHex_1_Hex_4_
dHex(1)Hex(4): Hex4dHex1.
Definition: cv.hpp:10746
UNIMOD_Val__Glu
Val->Glu: Val->Glu substitution.
Definition: cv.hpp:9246
UNIMOD_TNBS
TNBS: Tri nitro benzene.
Definition: cv.hpp:9396
UO_parts_per_notation_unit
parts per notation unit: A dimensionless concentration notation which describes the amount of one sub...
Definition: cv.hpp:11316
MS_SRM_spectrum
SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/...
Definition: cv.hpp:2238
MS_data_stored_in_database
data stored in database: Source file for this mzIdentML was a data set in a database.
Definition: cv.hpp:3627
UO_attomole
attomole: A substance unit equal to 10^[-18] mol.
Definition: cv.hpp:10956
MS_multiphoton_dissociation
multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a ...
Definition: cv.hpp:1731
UNIMOD_Gly__Ala
Gly->Ala: Gly->Ala substitution.
Definition: cv.hpp:8979
MS_frag__b_ion___H2O
frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
Definition: cv.hpp:3939
UNIMOD_Cation_Mg_II_
Cation:Mg[II]: Replacement of 2 protons by magnesium.
Definition: cv.hpp:9696
UNIMOD_Ethyl_Deamidated
Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
Definition: cv.hpp:9624
MS_researcher
researcher: Researcher role.
Definition: cv.hpp:4080
MS_SEQUEST_ViewCV
SEQUEST:ViewCV: SEQUEST View Input Parameters.
Definition: cv.hpp:3366
MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE
ProteomeDiscoverer:Source file extension: File type (if not pepXML).
Definition: cv.hpp:5466
MS_charge_remote_fragmentation
charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not...
Definition: cv.hpp:999
MS_m_z
m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion ...
Definition: cv.hpp:222
MS_peptide_identification_confidence_metric
peptide identification confidence metric: Identification confidence metric for a peptide.
Definition: cv.hpp:3582
MS_data_transformation
data transformation: Terms used to describe types of data processing.
Definition: cv.hpp:1791
MS_ProteomeDiscoverer_Static_Modification_for_X
ProteomeDiscoverer:Static Modification for X: Static Modification for X.
Definition: cv.hpp:5427
MS_ProteomeDiscoverer_5__Dynamic_Modification
ProteomeDiscoverer:5. Dynamic Modification: Determine 5th dynamic (variable) post-translational modif...
Definition: cv.hpp:7284
UNIMOD_Lipoyl
Lipoyl: Lipoyl.
Definition: cv.hpp:7950
MS_predicted_pI
predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would no...
Definition: cv.hpp:3138
MS_MPD
MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption ...
Definition: cv.hpp:1734
MS_protein_level_global_FDR
protein-level global FDR: Estimation of the global false discovery rate of proteins.
Definition: cv.hpp:3918
MS_run_attribute
run attribute: Properties of the described run.
Definition: cv.hpp:3114
UNIMOD_3_phosphoglyceryl
3-phosphoglyceryl: 3-phosphoglyceryl.
Definition: cv.hpp:10773
UNIMOD_Glu__Arg
Glu->Arg: Glu->Arg substitution.
Definition: cv.hpp:10008
MS_Xevo_G2_Tof
Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
Definition: cv.hpp:5607
UNIMOD_Phenylisocyanate_2H_5_
Phenylisocyanate:2H(5): D5-phenyl isocyanate.
Definition: cv.hpp:8634
UNIMOD_Lys
Lys: Addition of lysine due to transpeptidation.
Definition: cv.hpp:10614
UNIMOD_Glu__Trp
Glu->Trp: Glu->Trp substitution.
Definition: cv.hpp:10017
UNIMOD_Amidine
Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
Definition: cv.hpp:8130
MS_Bruker_Daltonics_flex_series
Bruker Daltonics flex series: Bruker Daltonics' flex series.
Definition: cv.hpp:4848
MS_base_peak_m_z
base peak m/z: M/z value of the signal of highest intensity in the mass spectrum. ...
Definition: cv.hpp:1965
MS_kinetic_method
kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedur...
Definition: cv.hpp:1716
MS_cationized_molecule
cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
Definition: cv.hpp:1491
MS_enhanced_multiply_charged_spectrum
enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared t...
Definition: cv.hpp:2901
MS_ProteomeDiscoverer_Target_FDR_Relaxed
ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR...
Definition: cv.hpp:5244
UNIMOD_Arg2PG
Arg2PG: Adduct of phenylglyoxal with Arg.
Definition: cv.hpp:9489
UO_unit_per_volume_unit
unit per volume unit: A concentration unit which is a standard measure of the number of units...
Definition: cv.hpp:11349
MS_NoiseFilter_OBSOLETE
NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
Definition: cv.hpp:2802
UO_solid_angle_unit
solid angle unit: A unit which is a standard measure of the angle formed by three or more planes inte...
Definition: cv.hpp:11196
MS_Comet_deltacnstar
Comet:deltacnstar: The Comet result 'DeltaCnStar'.
Definition: cv.hpp:7050
MS_SEQUEST_CleavesAt
SEQUEST:CleavesAt:
Definition: cv.hpp:3363
UNIMOD_Gly__Xle
Gly->Xle: Gly->Leu/Ile substitution.
Definition: cv.hpp:10068
MS_SpectrumMill_Discriminant_Score
SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
Definition: cv.hpp:4980
MS_ProteomeDiscoverer_min_peptide_length
ProteomeDiscoverer:min peptide length: Minimum peptide length.
Definition: cv.hpp:7257
MS_Synapt_G2_S_HDMS
Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
Definition: cv.hpp:5592
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of ...
Definition: cv.hpp:5106
UNIMOD_OxLysBiotin
OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:8061
MS_Conversion_to_mzData
Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file form...
Definition: cv.hpp:2094
UNIMOD_bisANS_sulfonates
bisANS-sulfonates: BisANS with loss of both sulfonates.
Definition: cv.hpp:10674
UO_mass_unit
mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object...
Definition: cv.hpp:10830
MS_MAT95XP
MAT95XP: ThermoFinnigan MAT95XP MS.
Definition: cv.hpp:732
MS_ProteomeDiscoverer_WinCyg_reference_database
ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
Definition: cv.hpp:5475
UNIMOD_Delta_H_5_C_2_
Delta:H(5)C(2): Dimethylation of proline residue.
Definition: cv.hpp:8853
MS_no_cleavage
no cleavage: No cleavage.
Definition: cv.hpp:6129
MS_Synapt_G2_HDMS
Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
Definition: cv.hpp:5586
MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score
ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptid...
Definition: cv.hpp:5229
UNIMOD_ExacTagAmine
ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
Definition: cv.hpp:9372
UNIMOD_Tyr__Pro
Tyr->Pro: Tyr->Pro substitution.
Definition: cv.hpp:10476
UNIMOD_Fluorescein
Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
Definition: cv.hpp:8100
UO_week
week: A time unit which is equal to 7 days.
Definition: cv.hpp:10926
MS_mass_analyzer
mass analyzer: Terms used to describe the Analyzer.
Definition: cv.hpp:1785
MS_Orbitrap_Fusion_ETD
Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
Definition: cv.hpp:7542
UNIMOD_HNE_Delta_H_2_O
HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
Definition: cv.hpp:9318
MS_non_leading_protein
non-leading protein: Zero to many proteins within each group should be annotated as non-leading to in...
Definition: cv.hpp:7497
MS_spectrum_representation
spectrum representation: Way in which the spectrum is represented, either with regularly spaced data ...
Definition: cv.hpp:2028
MS_protXML_format
protXML format: Source file for this mzIdentML was in protXML file format.
Definition: cv.hpp:4506
MS_ionization_type
ionization type: The method by which gas phase ions are generated from the sample.
Definition: cv.hpp:123
MS_Phenyx_Trust_Parent_Charge
Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state i...
Definition: cv.hpp:4383
UNIMOD_thioacylPA
thioacylPA: Membrane protein extraction.
Definition: cv.hpp:9714
MS_surface_assisted_laser_desorption_ionization
surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are...
Definition: cv.hpp:1635
MS_first_column_elution_time
first column elution time: The time of elution from the first chromatographic column in the chromatog...
Definition: cv.hpp:6537
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_
Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
Definition: cv.hpp:8154
MS_ProteinExtractor_Methodname
ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
Definition: cv.hpp:4512
MS_ion_molecule_reaction
ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction...
Definition: cv.hpp:1704
MS_spControl
spControl: Bruker software for data acquisition.
Definition: cv.hpp:2727
UO_volume_per_unit_volume
volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solu...
Definition: cv.hpp:11433
MS_normalized_collision_energy
normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional ener...
Definition: cv.hpp:621
UO_ratio
ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another...
Definition: cv.hpp:11388
MS_AB_SCIEX_TOF_TOF_T2D_nativeID_format
AB SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:4917
UNIMOD_Quinone
Quinone: Quinone.
Definition: cv.hpp:8583
UO_radiance_unit
radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through s...
Definition: cv.hpp:11301
UNIMOD_Val__Ala
Val->Ala: Val->Ala substitution.
Definition: cv.hpp:9243
MS_heterolytic_cleavage
heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single b...
Definition: cv.hpp:1680
MS_Da_OBSOLETE
Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1...
Definition: cv.hpp:864
MS_photodiode_array_detector
photodiode array detector: An array detector used to record spectra in the ultraviolet and visible re...
Definition: cv.hpp:2373
MS_laser_attribute
laser attribute: Laser properties that are associated with a value.
Definition: cv.hpp:3066
MS_spectrum_attribute
spectrum attribute: Spectrum properties that are associated with a value.
Definition: cv.hpp:1950
MS_ProteinLynx_Global_Server_mass_spectrum_XML_format
ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global ...
Definition: cv.hpp:2349
MS_assay_attribute
assay attribute: Attribute describing an assay.
Definition: cv.hpp:6618
UNIMOD_Phe__Gln
Phe->Gln: Phe->Gln substitution.
Definition: cv.hpp:10050
MS_Mascot_Integra
Mascot Integra: Mascot Integra.
Definition: cv.hpp:4713
MS_SEQUEST_sort_by_PreviousAminoAcid
SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino a...
Definition: cv.hpp:3489
MS_H2O_neutral_loss
H2O neutral loss: Neutral loss of water.
Definition: cv.hpp:7656
MS_isolation_window_attribute
isolation window attribute: Isolation window parameter.
Definition: cv.hpp:2910
MS_cross_link_donor
cross-link donor: The Cross-linking donor, assigned according to the following rules: the export soft...
Definition: cv.hpp:7818
MS_peak
peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often ...
Definition: cv.hpp:939
UNIMOD_LG_pyrrole
LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
Definition: cv.hpp:9669
UNIMOD_Crotonaldehyde
Crotonaldehyde: Crotonaldehyde.
Definition: cv.hpp:8280
MS_peptide_level_score
peptide level score: Peptide level score.
Definition: cv.hpp:7788
MS_DB_MW_filter_maximum
DB MW filter maximum: Maximum value of molecular weight filter.
Definition: cv.hpp:3885
UNIMOD_ICPL_13C_6_
ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
Definition: cv.hpp:8517
MS_Paragon__search_effort
Paragon: search effort: The Paragon method setting that controls the two major modes of search effort...
Definition: cv.hpp:7566
UNIMOD_Xle__Gly
Xle->Gly: Leu/Ile->Gly substitution.
Definition: cv.hpp:10137
MS_error_on_peptide_area
error on peptide area: Error on peptide area.
Definition: cv.hpp:3699
MS_database_file_formats
database file formats: The children of this term define file formats of the sequence database used...
Definition: cv.hpp:4290
UNIMOD_Chlorpyrifos
Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.
Definition: cv.hpp:9726
MS_MS_GF_
MS-GF+: MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6432
MS_search_result_details_OBSOLETE
search result details: OBSOLETE: Scores and global result characteristics.
Definition: cv.hpp:3915
MS_MS1_spectrum
MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-sta...
Definition: cv.hpp:2196
MS_spectrum_quality_descriptions
spectrum quality descriptions: Description of the quality of the input spectrum.
Definition: cv.hpp:4320
UO_milligray
milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy...
Definition: cv.hpp:11247
UNIMOD_PyridoxalPhosphateH2
PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linka...
Definition: cv.hpp:10764
MS_TOPP_SpectraFilterScaler
TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank...
Definition: cv.hpp:6717
UNIMOD_EGCG1
EGCG1: (-)-epigallocatechin-3-gallate.
Definition: cv.hpp:9783
MS_acquisition_parameter
acquisition parameter: Parameters used in the mass spectrometry acquisition.
Definition: cv.hpp:6126
MS_matrix_application_type
matrix application type: Describes the technique how the matrix is put on the sample target...
Definition: cv.hpp:3042
MS_dynamic_mass_spectrometry
dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fie...
Definition: cv.hpp:1326
UNIMOD_ICDID_2H_6_
ICDID:2H(6): Isotope-Coded Dimedone heavy form.
Definition: cv.hpp:9825
MS_protein_group_level_combined_FDRScore
protein group-level combined FDRScore: Combined FDRScore for proteins specifically obtained for disti...
Definition: cv.hpp:7416
UNIMOD_Cys__Dha
Cys->Dha: Dehydroalanine (from Cysteine).
Definition: cv.hpp:8526
MS_mzidLib_Thresholder
mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting ...
Definition: cv.hpp:7014
UNIMOD_Trp__Kynurenin
Trp->Kynurenin: Tryptophan oxidation to kynurenin.
Definition: cv.hpp:8487
UNIMOD_Crotonyl
Crotonyl: Crotonylation.
Definition: cv.hpp:10716
MS_TOPP_Decharger
TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity...
Definition: cv.hpp:6777
UNIMOD_LG_Hlactam_R
LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
Definition: cv.hpp:8811
MS_transmission
transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number e...
Definition: cv.hpp:960
UNIMOD_QTGG
QTGG: SUMOylation leaving GlnThrGlyGly.
Definition: cv.hpp:10596
MS_quantification_data_processing
quantification data processing: Terms used to describe types of quantification data processing...
Definition: cv.hpp:5838
MS_ACQUITY_UPLC_Systems_with_2D_Technology
ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology...
Definition: cv.hpp:5550
MS_MzWiff
MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML fo...
Definition: cv.hpp:2271
UNIMOD_Thr__Glu
Thr->Glu: Thr->Glu substitution.
Definition: cv.hpp:10365
UNIMOD_Lys__Xle
Lys->Xle: Lys->Leu/Ile substitution.
Definition: cv.hpp:9045
MS_MassHunter_Qualitative_Analysis
MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments...
Definition: cv.hpp:2556
MS_64_bit_integer
64-bit integer: Signed 64-bit little-endian integer.
Definition: cv.hpp:2019
MS_selected_reaction_monitoring_spectrum
selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2247
MS_reservoir
reservoir: A sample inlet method involving a reservoir.
Definition: cv.hpp:318
MS_chromatography_separation
chromatography separation: A technique by which molecules are separated by chemical and physical prop...
Definition: cv.hpp:7098
UNIMOD_dHex_1_Hex_3_
dHex(1)Hex(3): Hex3dHex1.
Definition: cv.hpp:10743
MS_mass_difference
mass difference (delta M): The difference between a theoretically calculated molecular mass M and the...
Definition: cv.hpp:6198
MS_SSMS_OBSOLETE
SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
Definition: cv.hpp:1245
MS_unlabeled_peptide
unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy".
Definition: cv.hpp:3225
MS_frag__d_ion
frag: d ion: Fragmentation information, type of product: d ion.
Definition: cv.hpp:3987
MS_isotope_dilution_mass_spectrometry_OBSOLETE
isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopical...
Definition: cv.hpp:897
UNIMOD_Gln__Ser
Gln->Ser: Gln->Ser substitution.
Definition: cv.hpp:10302
UNIMOD_PS_Hapten
PS_Hapten: Reaction with phenyl salicylate (PS).
Definition: cv.hpp:10695
MS_combined_FDRScore_for_proteins
combined FDRScore for proteins: Combined FDRScore for proteins.
Definition: cv.hpp:7389
MS_Auto_Spec_Ultima_NT
Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.
Definition: cv.hpp:657
MS_liquid_sample_state
liquid sample state: State if the sample is in liquid form.
Definition: cv.hpp:261
MS_mean_charge_array
mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean...
Definition: cv.hpp:7725
MS_delayed_extraction
delayed extraction: The application of the accelerating voltage pulse after a time delay in desorptio...
Definition: cv.hpp:1017
UO_gram_per_deciliter
gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the v...
Definition: cv.hpp:11442
MS_first_author
first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
Definition: cv.hpp:6387
UO_radiant_intensity_unit
radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiat...
Definition: cv.hpp:11295
MS_product_ion_scan_OBSOLETE
product ion scan: The specific scan function or process that records product ion spectrum.
Definition: cv.hpp:459
MS_TOPP_SpectraFilterWindowMower
TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak ...
Definition: cv.hpp:6726
MS_Shimadzu_Corporation_software
Shimadzu Corporation software: Shimadzu Corporation software.
Definition: cv.hpp:4911
UO_electric_charge
electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a bo...
Definition: cv.hpp:11475
MS_measurement_method
measurement method: An attribute of resolution when recording the detector response in absence of the...
Definition: cv.hpp:2289
MS_electron_ionization
electron ionization: The ionization of an atom or molecule by electrons that are typically accelerate...
Definition: cv.hpp:1587
UNIMOD_NEIAA
NEIAA: N-ethyl iodoacetamide-d0.
Definition: cv.hpp:8265
MS_MALDI_Solutions_LC_MALDI
MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting. ...
Definition: cv.hpp:7434
MS_ASN_1
ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format. ...
Definition: cv.hpp:4296
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor
ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge...
Definition: cv.hpp:5127
MS_product_background
product background: The background area for the quantified transition.
Definition: cv.hpp:7530
UO_becquerel
becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radio...
Definition: cv.hpp:11217
UNIMOD_Tyr__Arg
Tyr->Arg: Tyr->Arg substitution.
Definition: cv.hpp:10482
std::string URI
the URI for the resource.
Definition: cv.hpp:11687
UNIMOD_Phe__CamCys
Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
Definition: cv.hpp:9585
UNIMOD_Saligenin
Saligenin: O-toluene.
Definition: cv.hpp:10512
UNIMOD_Phytochromobilin
Phytochromobilin: Phytochromobilin.
Definition: cv.hpp:8574
MS_ProteomeDiscoverer_phosphoRS_sequence_probability
ProteomeDiscoverer:phosphoRS sequence probability: Probability that the respective isoform is correct...
Definition: cv.hpp:6174
MS_source_interface_manufacturer
source interface manufacturer: The source interface manufacturer.
Definition: cv.hpp:6123
MS_time_of_flight
time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a ...
Definition: cv.hpp:399
MS_number_of_matched_peaks
number of matched peaks: The number of peaks that were matched as qualified by the ion series conside...
Definition: cv.hpp:3669
MS_nitrogen_rule
nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nomin...
Definition: cv.hpp:930
MS_ProteomeDiscoverer_Protein_Relevance_Threshold
ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether...
Definition: cv.hpp:5298
MS_PeptideShaker_protein_group_score
PeptideShaker protein group score: The probability based PeptideShaker protein group score...
Definition: cv.hpp:7701
MS_merge_of_runs_of_1D_gel_bands
merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group...
Definition: cv.hpp:5727
UO_month
month: A time unit which is approximately equal to the length of time of one of cycle of the moon's p...
Definition: cv.hpp:10929
MS_LC_MS_label_free_quantitation_analysis
LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
Definition: cv.hpp:5757
UNIMOD_Benzoyl
Benzoyl: Labeling reagent light form (N-term & K).
Definition: cv.hpp:8118
UO_lumen
lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point s...
Definition: cv.hpp:11178
MS_ProteinExtractor_PhenyxPeptideScoreThreshold
ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition: cv.hpp:4572
MS_Phenyx_Score
Phenyx:Score: The protein score of a protein match in Phenyx.
Definition: cv.hpp:4419
UNIMOD_Glu__Val
Glu->Val: Glu->Val substitution.
Definition: cv.hpp:8961
MS_ProteinExtractor_SequestWeighting
ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the s...
Definition: cv.hpp:4554
UO_watt_per_steradian
watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second ...
Definition: cv.hpp:11304
MS_sample_volume
sample volume: Total volume of solution used.
Definition: cv.hpp:114
UNIMOD_Hex_1_HexNAc_2_Pent_1_
Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
Definition: cv.hpp:8160
UNIMOD_Thiophospho
Thiophospho: Thiophosphorylation.
Definition: cv.hpp:8298
UO_confluence_percentage
confluence percentage: A dimensionless percent unit which denotes the density of an attached or monol...
Definition: cv.hpp:11400
MS_modification_motif
modification motif: The regular expression describing the sequence motif for a modification.
Definition: cv.hpp:5880
MS_param__x_ion
param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side...
Definition: cv.hpp:4056
MS_scan_window_lower_limit
scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:1956
MS_peptide_attribute
peptide attribute: A nonphysical attribute that can be used to describe a peptide.
Definition: cv.hpp:3210
UO_half_life
half life: A time unit which represents the period over which the activity or concentration of a spec...
Definition: cv.hpp:11274
UNIMOD_Delta_H_4_C_6_
Delta:H(4)C(6): Acrolein addition +76.
Definition: cv.hpp:8259
MS_conversion_dynode_photomultiplier
conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce ele...
Definition: cv.hpp:486
UNIMOD_Gln__Tyr
Gln->Tyr: Gln->Tyr substitution.
Definition: cv.hpp:10314
MS_amaZon_Speed_ETD
amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7191
UNIMOD_Xle__Lys
Xle->Lys: Leu/Ile->Lys substitution.
Definition: cv.hpp:9024
MS_param__a_ion
param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side...
Definition: cv.hpp:3630
UO_microampere
microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6]...
Definition: cv.hpp:10938
UNIMOD_NeuAc
NeuAc: N-acetyl neuraminic acid.
Definition: cv.hpp:10620
UNIMOD_Tyr__Trp
Tyr->Trp: Tyr->Trp substitution.
Definition: cv.hpp:10491
UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_
Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:9795
UNIMOD_Xlink_SMCC
Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.
Definition: cv.hpp:9840
MS_Phenyx_Instrument_Type
Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
Definition: cv.hpp:4374
MS______BDEZ_____P_
(?<=[BDEZ])(?!P): Regular expression for V8-DE.
Definition: cv.hpp:4269
MS_conversion_dynode_electron_multiplier
conversion dynode electron multiplier: A surface that is held at high potential so that ions striking...
Definition: cv.hpp:483
UNIMOD_Xle__Phe
Xle->Phe: Leu/Ile->Phe substitution.
Definition: cv.hpp:9051
MS_ProteomeDiscoverer_Absolute_XCorr_Threshold
ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whet...
Definition: cv.hpp:5259
MS_label_free_proteingroup_level_quantitation
label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
Definition: cv.hpp:6351
MS_PROTEINEER
PROTEINEER: Bruker PROTEINEER software.
Definition: cv.hpp:2703
UNIMOD_BITC
BITC: Benzyl isothiocyanate.
Definition: cv.hpp:9732
MS_Anubis
Anubis: Anubis software for selected reaction monitoring data.
Definition: cv.hpp:7521
MS_TWIMS
TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique b...
Definition: cv.hpp:5646
MS_ETD
ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing f...
Definition: cv.hpp:2298
MS_ProteinExtractor_UsePhenyx
ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinE...
Definition: cv.hpp:4569
MS_SEQUEST_Uniq
SEQUEST:Uniq:
Definition: cv.hpp:3780
MS_Velos_Plus
Velos Plus: Thermo Scientific second generation Velos.
Definition: cv.hpp:5982
MS_thermal_ionization
thermal ionization: The ionization of a neutral species through contact with a high temperature surfa...
Definition: cv.hpp:1641
UNIMOD_DEDGFLYMVYASQETFG
DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
Definition: cv.hpp:9807
MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained
ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectr...
Definition: cv.hpp:6987
MS_glow_discharge_ionization
glow discharge ionization: The formation of ions in the gas phase and from solid samples at the catho...
Definition: cv.hpp:1095
UNIMOD_Pro__Arg
Pro->Arg: Pro->Arg substitution.
Definition: cv.hpp:9126
MS_confident_peptide_qualification
confident peptide qualification: The point of this entry is to define what is meant by confident for ...
Definition: cv.hpp:3603
UO_milligram
milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
Definition: cv.hpp:10890
MS_ProteomeDiscoverer_Mascot_Significance_High
ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy ...
Definition: cv.hpp:6978
UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_
Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
Definition: cv.hpp:8172
UO_picosecond
picosecond: A time unit which is equal to 10^[-12] s.
Definition: cv.hpp:10914
MS_small_molecule_modification_attribute
small molecule modification attribute: Attribute describing a small molecule modification.
Definition: cv.hpp:6645
UO_parts_per_thousand
parts per thousand: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:11322
MS_search_engine_specific_input_parameter
search engine specific input parameter: Search engine specific input parameters.
Definition: cv.hpp:4155
MS_ionizing_collision
ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are ...
Definition: cv.hpp:1701
MS_polarity_OBSOLETE
polarity: Terms to describe the polarity setting of the instrument.
Definition: cv.hpp:213
MS_search_engine_specific_input_metadata
search engine specific input metadata: Search engine specific metadata that are not user-controlled s...
Definition: cv.hpp:7587
UNIMOD_Ethanolyl
Ethanolyl: Ethanolation.
Definition: cv.hpp:8337
UNIMOD_Pro__Tyr
Pro->Tyr: Pro->Tyr substitution.
Definition: cv.hpp:10278
MS_frag__precursor_ion___NH3
frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia...
Definition: cv.hpp:4812
MS_ProteomeDiscoverer_Organism_OBSOLETE
ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
Definition: cv.hpp:5457
UO_degree_fahrenheit
degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahre...
Definition: cv.hpp:11403
UNIMOD_Ser__Asp
Ser->Asp: Ser->Asp substitution.
Definition: cv.hpp:10338
MS_reporter_ion_intensity
reporter ion intensity: Intensity of MS/MS reporter ion (e.g. iTraq).
Definition: cv.hpp:5796
MS_PeptideShaker
PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification result...
Definition: cv.hpp:7665
MS_Calculate_Probability_Scores
Calculate Probability Scores: Flag indicating that a probability score for the assessment that a repo...
Definition: cv.hpp:6561
MS_autoflex_III_smartbeam
autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
Definition: cv.hpp:2604
MS_sequence_coverage
sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can...
Definition: cv.hpp:3585
UNIMOD_Asn__Val
Asn->Val: Asn->Val substitution.
Definition: cv.hpp:10242
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5394
MS_unmodified_peptide_sequence
unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that comp...
Definition: cv.hpp:3213
UNIMOD_Cys__Asn
Cys->Asn: Cys->Asn substitution.
Definition: cv.hpp:9939
UNIMOD_Gly__Trp
Gly->Trp: Gly->Trp substitution.
Definition: cv.hpp:8985
MS_Shimadzu_Scientific_Instruments_instrument_model
Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model...
Definition: cv.hpp:2316
MS_SpectraST_discriminant_score_F
SpectraST:discriminant score F: SpectraST spectrum score.
Definition: cv.hpp:4497
UNIMOD_Hex_1_HexNAc_2_
Hex(1)HexNAc(2): Hex1HexNAc2.
Definition: cv.hpp:8151
UNIMOD_ICPL
ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
Definition: cv.hpp:8520
UO_femtogram
femtogram: A mass unit which is equal to 10^[-15] g.
Definition: cv.hpp:10902
UNIMOD_Thr__Ser
Thr->Ser: Thr->Ser substitution.
Definition: cv.hpp:9216
MS_TagRecon_MVH
TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5016
UNIMOD_Tyr__Gly
Tyr->Gly: Tyr->Gly substitution.
Definition: cv.hpp:10467
UO_year
year: A time unit which is equal to 12 months which is science is taken to be equal to 365...
Definition: cv.hpp:10932
MS_emission_spectrum
emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or ...
Definition: cv.hpp:2958
MS_CRM_chromatogram_OBSOLETE
CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an ...
Definition: cv.hpp:4668
MS_TOPP_OpenSwathDecoyGenerator
TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML...
Definition: cv.hpp:6888
MS_source_potential
source potential: Potential difference at the MS source in volts.
Definition: cv.hpp:1905
UO_volume_unit
volume unit: A unit which is a standard measure of the amount of space occupied by any substance...
Definition: cv.hpp:11109
MS_convex_hull_baseline_reduction
convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum...
Definition: cv.hpp:6255
MS_protein_group_passes_threshold
protein group passes threshold: A Boolean attribute to determine whether the protein group has passed...
Definition: cv.hpp:7536
MS_database_UniProtKB
database UniProtKB: The name of the UniProtKB knowledgebase.
Definition: cv.hpp:6666
UNIMOD_Hex_1_HexNAc_1_dHex_1_
Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
Definition: cv.hpp:8145
MS_SRM_quantitation_analysis
SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fra...
Definition: cv.hpp:5769
MS_____K____P_
(?<=K)(?!P): Regular expression for Lys-C.
Definition: cv.hpp:4254
UO_millicurie
millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-...
Definition: cv.hpp:11256
MS_Andi_MS_format
Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data...
Definition: cv.hpp:7614
MS_MS2_tag_based_proteingroup_level_quantitation
MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
Definition: cv.hpp:6366
UNIMOD_Biotin_Thermo_21360
Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
Definition: cv.hpp:9453
UNIMOD_His__Cys
His->Cys: His->Cys substitution.
Definition: cv.hpp:10095
MS_TSQ_Endura
TSQ Endura: Thermo Scientific TSQ Endura MS.
Definition: cv.hpp:7548
std::vector< std::string > exactSynonyms
Definition: cv.hpp:11721
MS_count_of_identified_proteins
count of identified proteins: The number of proteins that have been identified, which must match the ...
Definition: cv.hpp:7503
MS_AB_SCIEX_software
AB SCIEX software: AB SCIEX or Applied Biosystems software for data acquisition and analysis...
Definition: cv.hpp:2586
MS_SymBiot_XVI
SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
Definition: cv.hpp:792
MS_protein_group_level_identification_confidence_metric
protein group-level identification confidence metric: Identification confidence metric for a protein ...
Definition: cv.hpp:7335
MS_Scaffold_input_parameter
Scaffold input parameter: Search engine input parameters specific to Scaffold.
Definition: cv.hpp:6606
MS_ProteomeDiscoverer_Activation_Type_OBSOLETE
ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
Definition: cv.hpp:5067
MS_mass_table_source
mass table source: Children of this term specify the source of the mass table used.
Definition: cv.hpp:4284
MS_database_EST
database EST: Expressed sequence tag nucleotide sequence database.
Definition: cv.hpp:3840
MS_BioTOF_II
BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
Definition: cv.hpp:660
MS_energy_unit_OBSOLETE
energy unit: Energy units are represented in either eV or Joules.
Definition: cv.hpp:252
UNIMOD_Hex_2_HexNAc_2_
Hex(2)HexNAc(2): Hex2HexNAc2.
Definition: cv.hpp:8166
MS_MaRiMba_OBSOLETE
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3327
UNIMOD_Arg__His
Arg->His: Arg->His substitution.
Definition: cv.hpp:9165
MS_resonance_enhanced_multiphoton_ionization
resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross secti...
Definition: cv.hpp:1200
MS_PAnalyzer_non_conclusive_protein
PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive o...
Definition: cv.hpp:6933
MS_mass_number
mass number: The sum of the protons and neutrons in an atom, molecule or ion.
Definition: cv.hpp:909
MS_low_intensity_data_point_removal
low intensity data point removal: The removal of very low intensity data points that are likely to be...
Definition: cv.hpp:2280
MS_spectrum_same_set_protein
spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein...
Definition: cv.hpp:5040
MS_SpectraFilter_OBSOLETE
SpectraFilter: Applies a filter to peak spectra.
Definition: cv.hpp:2811
MS_TOPP_feature_linker
TOPP feature linker: Feature linker component of the TOPP software.
Definition: cv.hpp:6810
MS_ratio_calculation_method
ratio calculation method: Method used to calculate the ratio.
Definition: cv.hpp:6489
UNIMOD_Iodoacetanilide_13C_6_
Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
Definition: cv.hpp:10806
MS_number_of_unmatched_peaks
number of unmatched peaks: The number of unmatched peaks.
Definition: cv.hpp:4335
UNIMOD_Microcin
Microcin: Microcin E492 siderophore ester from serine.
Definition: cv.hpp:8727
MS_Ascore_Ascore
Ascore:Ascore: The Ascore score value from Ascore software.
Definition: cv.hpp:6225
MS_Micromass_PKL_format
Micromass PKL format: Micromass PKL file format.
Definition: cv.hpp:2151
UNIMOD_Phosphoguanosine
Phosphoguanosine: Phospho-guanosine.
Definition: cv.hpp:8637
MS_search_input_details
search input details: Details describing the search input.
Definition: cv.hpp:4020
UNIMOD_Gln__Gly
Gln->Gly: Gln->Gly substitution.
Definition: cv.hpp:10293
MS______FL__
(?<=[FL]): Regular expression for PepsinA.
Definition: cv.hpp:4260
MS_gene_name
gene name: Name of the gene from which the protein is translated.
Definition: cv.hpp:3357
MS_sector_mass_spectrometer
sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z sele...
Definition: cv.hpp:1311
MS_sample_state
sample state: The chemical phase of a pure sample, or the state of a mixed sample.
Definition: cv.hpp:108
MS_inlet_temperature
inlet temperature: The temperature of the inlet of a mass spectrometer.
Definition: cv.hpp:6408
MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification
ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used durin...
Definition: cv.hpp:5286
MS_SEQUEST_sort_by_RSp
SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in th...
Definition: cv.hpp:3507
UNIMOD_Thr__Asn
Thr->Asn: Thr->Asn substitution.
Definition: cv.hpp:9222
UNIMOD_Bodipy
Bodipy: Bodipy modifications onto cysteine.
Definition: cv.hpp:9528
MS_quantile_normalization__proteins
quantile normalization, proteins: Normalization of protein values to approach the same distribution...
Definition: cv.hpp:5844
MS_eight_sample_run
eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
Definition: cv.hpp:5721
UO_millimetres_of_mercury
millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep ...
Definition: cv.hpp:11634
MS_SEQUEST_TIC
SEQUEST:TIC: SEQUEST total ion current.
Definition: cv.hpp:4368
MS_Discoverer_MSF_format
Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format...
Definition: cv.hpp:4932
MS_Comet_sprank
Comet:sprank: The Comet result 'SpRank'.
Definition: cv.hpp:7056
MS_ProteomeDiscoverer_1__Dynamic_Modification
ProteomeDiscoverer:1. Dynamic Modification: Determine 1st dynamic post-translational modifications (P...
Definition: cv.hpp:5415
UO_derived_unit_OBSOLETE
derived unit: A unit which is derived from base units.
Definition: cv.hpp:10962
MS_PSM_level_e_value
PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
Definition: cv.hpp:7350
MS_DataAnalysis
DataAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2673
MS_SEQUEST_PeptideNumber
SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
Definition: cv.hpp:3927
UNIMOD_DMPO
DMPO: DMPO spin-trap nitrone adduct.
Definition: cv.hpp:9819
MS_esquire_4000
esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
Definition: cv.hpp:675
UNIMOD_Sulfo_NHS_LC_LC_Biotin
Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
Definition: cv.hpp:8841
MS_FASTA_format
FASTA format: The sequence database was stored in the FASTA format.
Definition: cv.hpp:4293
MS_decoy_DB_from_nr_OBSOLETE
decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
Definition: cv.hpp:4122
UO_lux
lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an ...
Definition: cv.hpp:11172
MS_isolation_window_target_m_z
isolation window target m/z: The primary or reference m/z about which the isolation window is defined...
Definition: cv.hpp:3027
UO_katal_per_cubic_meter
katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity o...
Definition: cv.hpp:11427
UNIMOD_Cation_Na
Cation:Na: Sodium adduct.
Definition: cv.hpp:7923
MS_LCQ_Advantage
LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
Definition: cv.hpp:708
UNIMOD_Succinyl_13C_4_
Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K...
Definition: cv.hpp:8019
MS_moving_belt
moving belt: Continuous moving surface in the form of a belt which passes through an ion source carry...
Definition: cv.hpp:306
UNIMOD_NEM_2H_5__H2O
NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
Definition: cv.hpp:10713
MS_mzIdentML_format
mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI...
Definition: cv.hpp:6510
MS_label_free_peptide_level_quantitation
label-free peptide level quantitation: Label-free peptide level quantitation.
Definition: cv.hpp:6345
UNIMOD_BADGE
BADGE: Bisphenol A diglycidyl ether derivative.
Definition: cv.hpp:8781
UNIMOD_Hex_3_
Hex(3): Hex3.
Definition: cv.hpp:8139
MS_molecule
molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of ...
Definition: cv.hpp:3120
MS_common_search_engine_input_parameter
common search engine input parameter: Search engine input parameter that is shared by more than one s...
Definition: cv.hpp:6573
UNIMOD_Gly__Glu
Gly->Glu: Gly->Glu substitution.
Definition: cv.hpp:8988
UNIMOD_Thiadiazole
Thiadiazole: Thiadiazolydation of Cys.
Definition: cv.hpp:9861
MS_Progenesis_normalization
Progenesis normalization: Normalization as performed by Progenesis LC-MS.
Definition: cv.hpp:5856
UNIMOD_Asn__Ser
Asn->Ser: Asn->Ser substitution.
Definition: cv.hpp:9090
MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE
decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
Definition: cv.hpp:6474
MS_BioTOF_III
BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
Definition: cv.hpp:4860
UNIMOD_Ala__Met
Ala->Met: Ala->Met substitution.
Definition: cv.hpp:9900
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overt...
Definition: cv.hpp:5136
MS_paul_ion_trap_OBSOLETE
paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage...
Definition: cv.hpp:1299
MS______FYWLKR_____P_
(?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
Definition: cv.hpp:4263
MS_frag__x_ion
frag: x ion: Fragmentation information, type of product: x ion.
Definition: cv.hpp:3963
MS_suface_ionization_OBSOLETE
suface ionization: The ionization of a neutral species when it interacts with a solid surface with an...
Definition: cv.hpp:1224
MS_Laser_Ionization_MERGE_OBSOLETE
Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser w...
Definition: cv.hpp:1140
UO_electric_current_unit
electric current unit: A unit which is a standard measure of the flow of electric charge...
Definition: cv.hpp:10836
#define PWIZ_API_DECL
Definition: Export.hpp:32
UNIMOD_TAMRA_FP
TAMRA-FP: TAMRA fluorophosphonate modification of serine.
Definition: cv.hpp:9870
MS_ProteoAnnotator_non_canonical_gene_model_score
ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped o...
Definition: cv.hpp:7713
MS_HCT
HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:687
MS_ProteomeDiscoverer_ion_settings
ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated...
Definition: cv.hpp:7278
UNIMOD_Trp__Tyr
Trp->Tyr: Trp->Tyr substitution.
Definition: cv.hpp:10458
MS_SRM_proteingroup_level_quantitation
SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation...
Definition: cv.hpp:7140
UNIMOD_Trp__Glu
Trp->Glu: Trp->Glu substitution.
Definition: cv.hpp:10428
MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measur...
Definition: cv.hpp:4665
MS_AutoSpec_Premier
AutoSpec Premier: Waters AutoSpec Premier.
Definition: cv.hpp:7119
MS_6320_Ion_Trap_LC_MS
6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1866
UNIMOD_dHex_1_Hex_5_
dHex(1)Hex(5): Hex5dHex1.
Definition: cv.hpp:10749
UNIMOD_Asn__Tyr
Asn->Tyr: Asn->Tyr substitution.
Definition: cv.hpp:9099
MS_PubMed_identifier
PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
Definition: cv.hpp:3186
MS_unstable_ion
unstable ion: An ion with sufficient energy to dissociate within the ion source.
Definition: cv.hpp:1557
MS_n_terminal_flanking_residue
n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it...
Definition: cv.hpp:3642
UNIMOD_Label_2H_4_
Label:2H(4): 4,4,5,5-D4 Lysine.
Definition: cv.hpp:8772
UNIMOD_Thr__Gln
Thr->Gln: Thr->Gln substitution.
Definition: cv.hpp:10377
MS_Voyager_Biospectrometry_Workstation_System
Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysi...
Definition: cv.hpp:2073
MS_TOPP_OpenSwathAnalyzer
TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
Definition: cv.hpp:6882
MS_PolarisQ
PolarisQ: ThermoFinnigan PolarisQ MS.
Definition: cv.hpp:762
MS_Trypsin_P
Trypsin/P: Cleavage agent Trypsin/P.
Definition: cv.hpp:4191
UNIMOD_Cys__ethylaminoAla
Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of e...
Definition: cv.hpp:9651
MS_file_format_conversion
file format conversion: Conversion of one file format to another.
Definition: cv.hpp:2043
MS_percent_of_base_peak_times_100
percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the m...
Definition: cv.hpp:3267
UNIMOD_Xlink_DMP
Xlink:DMP: Both ends of crosslink attached to same peptide.
Definition: cv.hpp:8751
MS_MS_GF_QValue
MS-GF:QValue: MS-GF Q-value.
Definition: cv.hpp:6453
MS_TODOscoring_model_OBSOLETE
TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed gr...
Definition: cv.hpp:3519
MS_param__c_ion
param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side...
Definition: cv.hpp:3663
MS_param__internal_ya_ion
param: internal ya ion: Parameter information, type of product: internal ya ion.
Definition: cv.hpp:4461
MS_chromatogram_title
chromatogram title: A free-form text title describing a chromatogram.
Definition: cv.hpp:2970
UO_nanogram
nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g...
Definition: cv.hpp:10896
MS_Bruker_Daltonics_apex_series
Bruker Daltonics apex series: Bruker Daltonics' apex series.
Definition: cv.hpp:4908
MS_FA
FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that car...
Definition: cv.hpp:1074
MS_selected_ion_monitoring_spectrum
selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2235
UNIMOD_Met__Lys
Met->Lys: Met->Lys substitution.
Definition: cv.hpp:9081
MS_ProteomeDiscoverer_Relaxed_Score_Threshold
ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring...
Definition: cv.hpp:7422
MS_preprocessing_software
preprocessing software: Preprocessing software.
Definition: cv.hpp:7449
UNIMOD_EGCG2
EGCG2: (-)-dehydroepigallocatechin.
Definition: cv.hpp:9786
MS_Phenyx_input_parameter
Phenyx input parameter: Search engine input parameters specific to Phenyx.
Definition: cv.hpp:6582
id_list parentsPartOf
Definition: cv.hpp:11719
UNIMOD_Met__His
Met->His: Met->His substitution.
Definition: cv.hpp:10194
MS_Paul_Ion_trap
Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three d...
Definition: cv.hpp:387
MS_ionization_energy
ionization energy: The minimum energy required to remove an electron from an atom or molecule to prod...
Definition: cv.hpp:891
MS_ProteomeDiscoverer_Xtract_Lowest_Charge
ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of...
Definition: cv.hpp:5160
MS_ten_percent_valley
ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the ...
Definition: cv.hpp:414
UNIMOD_dHex_1_Hex_5_HexNAc_4_
dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
Definition: cv.hpp:8400
UNIMOD_Phe__Ala
Phe->Ala: Phe->Ala substitution.
Definition: cv.hpp:10023
MS_Byonic_Score
Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects...
Definition: cv.hpp:7074
MS_MSn
MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by pr...
Definition: cv.hpp:1167
UNIMOD_Menadione
Menadione: Menadione quinone derivative.
Definition: cv.hpp:8388
UNIMOD_Met__Xle
Met->Xle: Met->Leu/Ile substitution.
Definition: cv.hpp:9084
MS_source_sprayer_manufacturer
source sprayer manufacturer: The source sprayer manufacturer.
Definition: cv.hpp:6066
UO_effective_dose_unit
effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that...
Definition: cv.hpp:11598
MS_Byonic_Best_Score
Byonic:Best Score: Best (largest) Byonic score of a PSM.
Definition: cv.hpp:7095
MS_sum_peak_picking
sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to conv...
Definition: cv.hpp:2940
MS_PASSEL_experiment_URI
PASSEL experiment URI: URI that allows access to a PASSEL experiment.
Definition: cv.hpp:7551
MS_SRM_software
SRM software: Software used to predict, select, or optimize transitions or analyze the results of sel...
Definition: cv.hpp:3162
MS_wavelet_transformation_smoothing
wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transf...
Definition: cv.hpp:6261
MS_S_lens_voltage
S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide i...
Definition: cv.hpp:5994
MS_param__w_ion
param: w ion: Parameter information, type of product: side chain loss w ion.
Definition: cv.hpp:4053
UNIMOD_Ser__Asn
Ser->Asn: Ser->Asn substitution.
Definition: cv.hpp:9195
UNIMOD_Hex_4_HexNAc_4_
Hex(4)HexNAc(4): Biantennary (-1 galactose).
Definition: cv.hpp:8406
MS_original_nucleic_acid_sequence
original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.
Definition: cv.hpp:6372
UNIMOD_Delta_Hg_1_
Delta:Hg(1): Mercury Mercaptan.
Definition: cv.hpp:8364
MS_SEQUEST_sort_by_Ions
SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
Definition: cv.hpp:3477
MS_resolution_measurement_method
resolution measurement method: Which of the available standard measures is used to define whether two...
Definition: cv.hpp:135
UNIMOD_CyDye_Cy3
CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:8784
MS_MassHunter_Mass_Profiler
MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS d...
Definition: cv.hpp:2571
MS_surface_induced_reaction
surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either...
Definition: cv.hpp:1746
UNIMOD_Trp__Thr
Trp->Thr: Trp->Thr substitution.
Definition: cv.hpp:10452
MS_BIRD
BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation...
Definition: cv.hpp:996
UNIMOD_Arg__Thr
Arg->Thr: Arg->Thr substitution.
Definition: cv.hpp:9156
MS_precursor_neutral_loss
precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion...
Definition: cv.hpp:4821
MS_single_reaction_monitoring_OBSOLETE
single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition: cv.hpp:465
MS_data_file_checksum_type
data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrit...
Definition: cv.hpp:2139
MS_dye_laser
dye-laser: Dye lasers use an organic dye as the gain medium.
Definition: cv.hpp:3099
MS_mass_spectrometry_mass_spectrometry
mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged p...
Definition: cv.hpp:1158
UNIMOD_EQIGG
EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
Definition: cv.hpp:9486
MS_Progenesis_LC_MS
Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow. ...
Definition: cv.hpp:5745
MS_frag__z_ion___H2O
frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
Definition: cv.hpp:4797
UO_concentration_unit
concentration unit: A unit which represents a standard measurement of how much of a given substance t...
Definition: cv.hpp:10977
std::string name
Definition: cv.hpp:11713
MS_AB_SCIEX_TOF_TOF_T2D_format
AB SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export...
Definition: cv.hpp:4920
MS_amaZon_X
amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4884
MS_1200_series_LC_MSD_SL
1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap fami...
Definition: cv.hpp:1845
MS_____R____P_
(?<=R)(?!P): Regular expression for Arg-C.
Definition: cv.hpp:4083
MS_LTQ_XL_ETD
LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
Definition: cv.hpp:2433
UNIMOD_Lys__Phe
Lys->Phe: Lys->Phe substitution.
Definition: cv.hpp:10152
MS_adduct_ion
adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an io...
Definition: cv.hpp:1479
MS_ProteomeDiscoverer_3__Static_Modification
ProteomeDiscoverer:3. Static Modification: Determine 3rd static (fixed) post-translational modificati...
Definition: cv.hpp:7281
MS_Byonic__Peptide_AbsLogProb
Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition: cv.hpp:7218
UNIMOD_Label_13C_8_15N_2_
Label:13C(8)15N(2): 13C(8) 15N(2) Silac label.
Definition: cv.hpp:9501
UNIMOD_Dap_DSP
Dap-DSP: Diaminopimelic acid-DSP monolinked.
Definition: cv.hpp:10809
MS_maXis
maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:4869
UO_watt_per_steradian_per_square_meter
watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power inci...
Definition: cv.hpp:11292
MS_ProteinExtractor_Weighting
ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
Definition: cv.hpp:6153
MS_Bruker_Container_format
Bruker Container format: Bruker Container raw file format.
Definition: cv.hpp:7197
UNIMOD_DiLeu4plex118
DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
Definition: cv.hpp:10662
UNIMOD_Diacylglycerol
Diacylglycerol: Diacylglycerol.
Definition: cv.hpp:8547
MS_ProteoWizard_SeeMS
ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a var...
Definition: cv.hpp:6915
MS_DTASelect_format
DTASelect format: DTASelect file format.
Definition: cv.hpp:4632
MS_MassIVE_dataset_URI
MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
Definition: cv.hpp:7755
MS_database_IPI_cow
database IPI_cow: International Protein Index database for Bos taurus sequences.
Definition: cv.hpp:4116
UNIMOD_Cys__Thr
Cys->Thr: Cys->Thr substitution.
Definition: cv.hpp:9948
MS_TOPP_OpenSwathChromatogramExtractor
TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
Definition: cv.hpp:6885
MS_intensity_unit
intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when usin...
Definition: cv.hpp:243
MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE
ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
Definition: cv.hpp:5088
UO_dalton
dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the ...
Definition: cv.hpp:11481
MS_metabolic_labelling__labelling_purity
metabolic labelling: labelling purity: Metabolic labelling: Description of labelling purity...
Definition: cv.hpp:6498
UNIMOD_Thr__Arg
Thr->Arg: Thr->Arg substitution.
Definition: cv.hpp:9237
UO_millisievert
millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv...
Definition: cv.hpp:11235
UNIMOD_Val__His
Val->His: Val->His substitution.
Definition: cv.hpp:10392
UNIMOD_His__Gln
His->Gln: His->Gln substitution.
Definition: cv.hpp:9009
MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor
ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score...
Definition: cv.hpp:5295
MS_Q_TRAP
Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
Definition: cv.hpp:768
MS_LTQ_FT
LTQ FT: Finnigan LTQ FT MS.
Definition: cv.hpp:1776
UNIMOD_Label_13C_6_15N_2__Dimethyl
Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
Definition: cv.hpp:9750
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of th...
Definition: cv.hpp:5115
MS_SEQUEST_TopPercentMostIntense
SEQUEST:TopPercentMostIntense: Specify "percentage" as value of the CVParam.
Definition: cv.hpp:3594
UO_kilogram_per_mole
kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical e...
Definition: cv.hpp:11085
UO_purity_percentage
purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial...
Definition: cv.hpp:11397
MS_MS_GF_PepQValue
MS-GF:PepQValue: MS-GF peptide-level Q-value.
Definition: cv.hpp:6456
MS_spectrum_generation_information
spectrum generation information: Vocabularies describing the spectrum generation information.
Definition: cv.hpp:4614
MS_average_product_ion_intensity
average product ion intensity: Average value of product ion intensity in a collection of identified s...
Definition: cv.hpp:6963
MS_basepeak_chromatogram
basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each ti...
Definition: cv.hpp:2403
MS_ProteomeXchange_project_tag
ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the groupi...
Definition: cv.hpp:7311
MS_TOPP_EICExtractor
TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps...
Definition: cv.hpp:6780
MS_mass_type_settings
mass type settings: The type of mass difference value to be considered by the search engine (monoisot...
Definition: cv.hpp:3906
MS_Bruker_Container_nativeID_format
Bruker Container nativeID format: Native identifier (UUID).
Definition: cv.hpp:7200
MS_peptide_sharing_details
peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this...
Definition: cv.hpp:3687
MS_molecular_beam_mass_spectrometry
molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced int...
Definition: cv.hpp:918
UNIMOD_Cys__Gly
Cys->Gly: Cys->Gly substitution.
Definition: cv.hpp:8922
MS_Lys_C
Lys-C: Endoproteinase Lys-C.
Definition: cv.hpp:4179
UNIMOD_Gly__Gln
Gly->Gln: Gly->Gln substitution.
Definition: cv.hpp:10083
MS_retention_time_window_lower_offset
retention time window lower offset: The extent of the retention time window in time units below the t...
Definition: cv.hpp:3303
MS_nth_generation_product_ion_spectrum
nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments desig...
Definition: cv.hpp:2217
MS_1200_series_LC_MSD_VL
1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrom...
Definition: cv.hpp:1881
MS_TOPP_FeatureFinderCentroided
TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data...
Definition: cv.hpp:6786
MS_microflex_LRF
microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
Definition: cv.hpp:4875
MS_parameter_file
parameter file: Parameter file used to configure the acquisition of raw data on the instrument...
Definition: cv.hpp:2736
UO_percent
percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
Definition: cv.hpp:11379
UNIMOD_Gln__Glu
Gln->Glu: Gln->Glu substitution.
Definition: cv.hpp:9138
UNIMOD_Asp__Glu
Asp->Glu: Asp->Glu substitution.
Definition: cv.hpp:8940
UNIMOD_Dimethyl
Dimethyl: Di-Methylation.
Definition: cv.hpp:7935
UNIMOD_mTRAQ
mTRAQ: MTRAQ light.
Definition: cv.hpp:9543
UO_disintegrations_per_minute
disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:11262
UNIMOD_HN2_mustard
HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
Definition: cv.hpp:10776
MS_electron_multiplier_tube
electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:495
MS_ion_pair_formation
ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment ...
Definition: cv.hpp:1593
MS_ion_stability_type
ion stability type: Stability type of the ion.
Definition: cv.hpp:7320
MS_overlayer_MALDI_sample_preparation
overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method...
Definition: cv.hpp:6240
MS_neutral_loss
neutral loss: The loss of an uncharged species during a rearrangement process.
Definition: cv.hpp:1425
MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions
ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative fac...
Definition: cv.hpp:5337
MS_Bruker_Daltonics_micrOTOF_series
Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
Definition: cv.hpp:4854
MS_translation_table
translation table: The translation table used to translate the nucleotides to amino acids...
Definition: cv.hpp:3420
MS_LTQ_Orbitrap_XL
LTQ Orbitrap XL: LTQ Orbitrap XL.
Definition: cv.hpp:2124
MS_spectrum_from_database_integer_nativeID_format
spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
Definition: cv.hpp:4824
UNIMOD_Arg__Xle
Arg->Xle: Arg->Leu/Ile substitution.
Definition: cv.hpp:9177
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr paramete...
Definition: cv.hpp:5367
MS_taxonomy__NCBI_TaxID
taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens...
Definition: cv.hpp:4638
MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE
ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta...
Definition: cv.hpp:5358
MS_SRM_transition_attribute
SRM transition attribute: Attribute associated with a SRM transition.
Definition: cv.hpp:6954
UO_microgram_per_milliliter
microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divid...
Definition: cv.hpp:11640
UNIMOD_Cation_K
Cation:K: Replacement of proton by potassium.
Definition: cv.hpp:8856
MS_Synapt_G2_S_MS
Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
Definition: cv.hpp:5595
UNIMOD_Label_13C_9__Phospho
Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
Definition: cv.hpp:8214
UNIMOD_ICAT_H_13C_6_
ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
Definition: cv.hpp:8091
MS_search_tolerance_plus_value
search tolerance plus value:
Definition: cv.hpp:4476
MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE
ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
Definition: cv.hpp:5064
UNIMOD_PyMIC
PyMIC: 3-methyl-2-pyridyl isocyanate.
Definition: cv.hpp:8799
MS_instrument_model
instrument model: Instrument model name not including the vendor's name.
Definition: cv.hpp:195
UNIMOD_Delta_H_4_C_3_
Delta:H(4)C(3): Propionaldehyde +40.
Definition: cv.hpp:8289
MS_one_sample_run
one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
Definition: cv.hpp:5709
MS_reflectron_on
reflectron on: Reflectron is on.
Definition: cv.hpp:474
UO_magnetic_flux_unit
magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of th...
Definition: cv.hpp:11493
MS_protein_rank
protein rank: The rank of the protein in a list sorted by the search engine.
Definition: cv.hpp:4152
MS_SID
SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a su...
Definition: cv.hpp:612
MS_6300_Series_Ion_Trap_Data_Analysis_Software
6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass ...
Definition: cv.hpp:2580
MS_instrument_configuration
instrument configuration (instrument): Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1833
MS_ion_mobility_spectrometry
ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas un...
Definition: cv.hpp:1107
MS_positive_ion_mode_OBSOLETE
positive ion mode: OBSOLETE.
Definition: cv.hpp:366
UNIMOD_Pro__Thr
Pro->Thr: Pro->Thr substitution.
Definition: cv.hpp:9123
UO_unit
unit: A unit of measurement is a standardized quantity of a physical quality.
Definition: cv.hpp:10824
UNIMOD_Biotin_Thermo_88310
Biotin:Thermo-88310: Desthiobiotin modification of lysine.
Definition: cv.hpp:9849
MS_alternating_OBSOLETE
alternating: Alternating.
Definition: cv.hpp:1842
UNIMOD_Atto495Maleimide
Atto495Maleimide: High molecular absorption maleimide label for proteins.
Definition: cv.hpp:9636
UNIMOD_PEITC
PEITC: Phenethyl isothiocyanate.
Definition: cv.hpp:9735
UNIMOD_Diisopropylphosphate
Diisopropylphosphate: O-Diisopropylphosphorylation.
Definition: cv.hpp:8511
MS_MS2_tag_based_protein_level_quantitation
MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
Definition: cv.hpp:6363
UNIMOD_Diiodo
Diiodo: Di-Iodination.
Definition: cv.hpp:8106
MS_modification_specificity_rule
modification specificity rule: The specificity rules for the modifications applied by the search engi...
Definition: cv.hpp:3498
UNIMOD_Asp__Pro
Asp->Pro: Asp->Pro substitution.
Definition: cv.hpp:9969
UNIMOD_Glu__Xle
Glu->Xle: Glu->Leu/Ile substitution.
Definition: cv.hpp:9996
MS_micrOTOF_Q
micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2625
MS_peptide_consensus_RT
peptide consensus RT: Peptide consensus retention time.
Definition: cv.hpp:6483
MS_ProteomeDiscoverer_input_parameter
ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
Definition: cv.hpp:6594
UNIMOD_Delta_H_2_C_3_
Delta:H(2)C(3): Acrolein addition +38.
Definition: cv.hpp:8256
MS_offset_voltage
offset voltage: The potential difference between two adjacent interface voltages affecting in-source ...
Definition: cv.hpp:5892
MS_greylag
greylag: Greylag identification software.
Definition: cv.hpp:4623
UNIMOD_HexN
HexN: Hexosamine.
Definition: cv.hpp:8745
UNIMOD_ICAT_H
ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
Definition: cv.hpp:8088
MS_quantification_information
quantification information: Quantification information.
Definition: cv.hpp:3693
MS_source_interface
source interface: The source interface.
Definition: cv.hpp:6054
MS_charge_permutation_reaction
charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in...
Definition: cv.hpp:1665
MS_secondary_ionization
secondary ionization: The process in which ions are ejected from a sample surface as a result of bomb...
Definition: cv.hpp:1626
UNIMOD_Carboxymethyl
Carboxymethyl: Iodoacetic acid derivative.
Definition: cv.hpp:7869
MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores
ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with score...
Definition: cv.hpp:5184
MS_Comet_spscore
Comet:spscore: The Comet result 'SpScore'.
Definition: cv.hpp:7053
UO_kilobyte
kilobyte: An information unit which is equal to 1000 bytes.
Definition: cv.hpp:11520
MS_Mascot_query_number
Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
Definition: cv.hpp:4830
MS_DB_filter_on_sequence_pattern
DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern...
Definition: cv.hpp:3426
UO_femtomolar
femtomolar: A unit of molarity which is equal to 10^[-15] M.
Definition: cv.hpp:11043
MS_Bruker_Daltonics_amaZon_series
Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
Definition: cv.hpp:4881
UNIMOD_Pro__Cys
Pro->Cys: Pro->Cys substitution.
Definition: cv.hpp:10248
UO_cubic_centimeter_per_mole
cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one m...
Definition: cv.hpp:11094
UNIMOD_Label_2H_4__Acetyl
Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
Definition: cv.hpp:9474
UNIMOD_Gly__Phe
Gly->Phe: Gly->Phe substitution.
Definition: cv.hpp:10062
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge...
Definition: cv.hpp:5352
MS_Phenyx_MinPepLength
Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identi...
Definition: cv.hpp:4398
MS_DTA_format
DTA format: SEQUEST DTA file format.
Definition: cv.hpp:2346
MS_TOPP_map_aligner
TOPP map aligner: Map aligner component of the TOPP software.
Definition: cv.hpp:6729
UNIMOD_dHex_1_Hex_4_HexNAc_4_
dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).
Definition: cv.hpp:8397
MS_Scaffold_Protein_Probability
Scaffold:Protein Probability: Scaffold protein probability score.
Definition: cv.hpp:4977
UNIMOD_TMT2plex
TMT2plex: Duplex Tandem Mass Tag®.
Definition: cv.hpp:9363
MS_Bruker_Daltonics_HCT_Series
Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
Definition: cv.hpp:2607
MS_TOPP_SpectraFilterBernNorm
TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
Definition: cv.hpp:6702
UNIMOD_Myristoyl
Myristoyl: Myristoylation.
Definition: cv.hpp:7959
MS_PeptideShaker_peptide_confidence
PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
Definition: cv.hpp:7698
MS_DB_filter_taxonomy
DB filter taxonomy: A taxonomy filter was to the database search.
Definition: cv.hpp:3405
UNIMOD_IED_Biotin
IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
Definition: cv.hpp:8373
MS_laser_type
laser type: Type of laser used used for desorption purpose.
Definition: cv.hpp:3069
UNIMOD_Methyl_2H_3_13C_1_
Methyl:2H(3)13C(1): Monomethylated arginine.
Definition: cv.hpp:8445
MS_regular_expression_for_a_digital_object_identifier__DOI_
(?:[.][0-9]+)*/(?:(?!["&\'<>]))+).
Definition: cv.hpp:7731
MS_Paragon__ID_focus
Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such ...
Definition: cv.hpp:7569
MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search
ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the M...
Definition: cv.hpp:5205
MS_sum_of_spectra
sum of spectra: Spectra Sum.
Definition: cv.hpp:2169
UNIMOD_AccQTag
AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
Definition: cv.hpp:8229
UNIMOD_DiART6plex118
DiART6plex118: Accurate mass for DiART6plex 118.
Definition: cv.hpp:10800
MS_accelerating_voltage
accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectr...
Definition: cv.hpp:1320
MS_flowing_afterglow
flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries ...
Definition: cv.hpp:1071
MS_DB_PI_filter_minimum
DB PI filter minimum: Minimum value of isoelectric point filter.
Definition: cv.hpp:3894
MS_channeltron
channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
Definition: cv.hpp:477
UO_milliampere
milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3...
Definition: cv.hpp:10935
UO_base_pair
base pair: A count unit which contains one nucleotide.
Definition: cv.hpp:11550
UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_
Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:9798
MS_isolation_window_upper_limit_OBSOLETE
isolation window upper limit: The highest m/z being isolated in an isolation window.
Definition: cv.hpp:2913
UNIMOD_Ser__LacticAcid
Ser->LacticAcid: Lactic acid from N-term Ser.
Definition: cv.hpp:8613
MS_RGA
RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gass...
Definition: cv.hpp:1209
MS_odd_electron_rule
odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions...
Definition: cv.hpp:936
MS_interchannel_delay
interchannel delay: The duration of intervals between scanning, during which the instrument configura...
Definition: cv.hpp:3189
UO_degree
degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad...
Definition: cv.hpp:11373
MS_Mascot_homology_threshold
Mascot:homology threshold: The Mascot result 'homology threshold'.
Definition: cv.hpp:4359
MS_FileFilter
FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files...
Definition: cv.hpp:2787
UO_rate_unit
rate unit: A unit which represents a standard measurement occurrence of a process per unit time...
Definition: cv.hpp:11658
UNIMOD_Label_13C_3_
Label:13C(3): 13C3 label for SILAC.
Definition: cv.hpp:10599
MS_time_digital_converter
time-digital converter: A device for converting a signal of sporadic pluses into a digital representa...
Definition: cv.hpp:531
UNIMOD_Thr__Gly
Thr->Gly: Thr->Gly substitution.
Definition: cv.hpp:10371
UNIMOD_Met__Aha
Met->Aha: Methionine replacement by azido homoalanine.
Definition: cv.hpp:9564
MS_experimental_condition__healthy_
experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'...
Definition: cv.hpp:5694
MS_postacceleration_detector
postacceleration detector: A detector in which the charged particles are accelerated to a high veloci...
Definition: cv.hpp:1473
UNIMOD_Hex_5_HexNAc_2_
Hex(5)HexNAc(2): N-linked glycan core.
Definition: cv.hpp:8121
MS_TOPP_IDConflictResolver
TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
Definition: cv.hpp:6855
UO_dose_equivalent_unit
dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its bi...
Definition: cv.hpp:11211
UNIMOD_Pro__Ala
Pro->Ala: Pro->Ala substitution.
Definition: cv.hpp:9114
UO_dyne_per_cm
dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
Definition: cv.hpp:11583
UNIMOD_NIC
NIC: Nicotinic Acid.
Definition: cv.hpp:9312
UNIMOD_biotinAcrolein298
biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
Definition: cv.hpp:10641
UNIMOD_Cys__Met
Cys->Met: Cys->Met substitution.
Definition: cv.hpp:9936
MS_multiple_ion_monitoring_OBSOLETE
multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values...
Definition: cv.hpp:447
MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE
ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
Definition: cv.hpp:5253
MS_CS
CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the re...
Definition: cv.hpp:1014
MS_appearance_energy
appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a speci...
Definition: cv.hpp:843
MS_explorer
explorer: IonSpec Explorer MS.
Definition: cv.hpp:681
MS_MaxQuant_Phospho__STY__Score_Diffs
MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
Definition: cv.hpp:6213
UNIMOD_Xle__Gln
Xle->Gln: Leu/Ile->Gln substitution.
Definition: cv.hpp:9066
MS_SEQUEST_xcorr
SEQUEST:xcorr: The SEQUEST result 'XCorr'.
Definition: cv.hpp:3771
UNIMOD_Met__Hse
Met->Hse: Homoserine.
Definition: cv.hpp:7881
UNIMOD_Delta_H_2_C_3_O_1_
Delta:H(2)C(3)O(1): MDA adduct +54.
Definition: cv.hpp:8427
MS_Tranche_project_hash
Tranche project hash: Hash assigned by the Tranche resource to a whole project.
Definition: cv.hpp:6045
MS_sample_preparation
sample preparation: Properties of the preparation steps which took place before the measurement was p...
Definition: cv.hpp:3036
MS_associative_ionization
associative ionization: An ionization process in which two excited atoms or molecules react to form a...
Definition: cv.hpp:1563
MS_sample_number
sample number: A reference number relevant to the sample under study.
Definition: cv.hpp:102
UO_micromolar
micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M...
Definition: cv.hpp:11016
MS_Applied_Biosystems_software
Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis...
Definition: cv.hpp:2589
UO_plaque_forming_unit_per_volume
plaque forming unit per volume: A concentration unit which a measure of plague forming units in a giv...
Definition: cv.hpp:11460
MS_PTMProphet
PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the p...
Definition: cv.hpp:7167
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spec...
Definition: cv.hpp:5109
UO_parts_per_trillion
parts per trillion: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:11331
UNIMOD_Ser__His
Ser->His: Ser->His substitution.
Definition: cv.hpp:10344
MS_database_IPI_mouse
database IPI_mouse: International Protein Index database for Mus musculus sequences.
Definition: cv.hpp:4104
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr para...
Definition: cv.hpp:5385
MS_MassHunter_Easy_Access
MassHunter Easy Access: Software for open access data acquisition.
Definition: cv.hpp:2553
MS_EMT
EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged partic...
Definition: cv.hpp:498
UNIMOD_PhosphoHexNAc
PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
Definition: cv.hpp:8676
MS_TOPP_MRMMapper
TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)...
Definition: cv.hpp:6876
MS_16_bit_float_OBSOLETE
16-bit float: Signed 16-bit float.
Definition: cv.hpp:2013
UNIMOD_Lys__MetOx
Lys->MetOx: Lys->Met substitution and sulfoxidation.
Definition: cv.hpp:9591
UNIMOD_Xle__His
Xle->His: Leu/Ile->His substitution.
Definition: cv.hpp:9063
MS_Progenesis_confidence_score
Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS...
Definition: cv.hpp:5937
UNIMOD_Gly_loss_Amide
Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
Definition: cv.hpp:9459
MS_DB_composition_only_decoy
DB composition only decoy: Decoy database composition: database contains only decoy entries...
Definition: cv.hpp:4599
MS_text_format
text format: Simple text file format of "m/z [intensity]" values for a PMF (or single MS-MS) search...
Definition: cv.hpp:4356
MS_fast_ion_bombardment
fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions havi...
Definition: cv.hpp:1767
UO_bit
bit: An information unit which refers to a digit in the binary numeral system, which consists of base...
Definition: cv.hpp:11514
MS_Trans_Proteomic_Pipeline
Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS/MS proteomics data de...
Definition: cv.hpp:7143
MS_Electronic_Ionization_OBSOLETE
Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelera...
Definition: cv.hpp:339
UNIMOD_Trp__Val
Trp->Val: Trp->Val substitution.
Definition: cv.hpp:10455
MS_TIQAM
TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring ex...
Definition: cv.hpp:3324
UNIMOD_Phe__Cys
Phe->Cys: Phe->Cys substitution.
Definition: cv.hpp:8967
MS_frag__c_ion___H2O
frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
Definition: cv.hpp:4791
MS_QTRAP_5500
QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
Definition: cv.hpp:3348
UNIMOD_Label_13C_6_
Label:13C(6): 13C(6) Silac label.
Definition: cv.hpp:8223
MS_charge_array
charge array: A data array of charge values.
Definition: cv.hpp:2001
MS_decoy_SRM_transition
decoy SRM transition: A transition not expected to be present in the sample and used to calculate sta...
Definition: cv.hpp:6303
UO_nanogray
nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] ...
Definition: cv.hpp:11250
MS_data_processing_action
data processing action: Data processing attribute used to describe the type of data processing perfor...
Definition: cv.hpp:2085
MS_spectrum_type
spectrum type: Spectrum type.
Definition: cv.hpp:2133
MS_ANOVA_test
ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.
Definition: cv.hpp:6504
MS_median_baseline_reduction
median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of ...
Definition: cv.hpp:6258
MS_preset_scan_configuration
preset scan configuration: A user-defined scan configuration that specifies the instrumental settings...
Definition: cv.hpp:2358
UO_enzyme_unit
enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the ...
Definition: cv.hpp:11361
UO_angstrom
angstrom: A length unit which is equal to 10 [-10] m.
Definition: cv.hpp:10881
UNIMOD_DimethylArsino
DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
Definition: cv.hpp:9579
MS_DB_source_EBI
DB source EBI: Database source EBI.
Definition: cv.hpp:4029
MS_proline_endopeptidase
proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
Definition: cv.hpp:6003
MS_single_protein_result_details
single protein result details: Results specific for one protein as part of a protein ambiguity group ...
Definition: cv.hpp:3654
MS_ultraflex_TOF_TOF
ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
Definition: cv.hpp:813
MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the mea...
Definition: cv.hpp:5157
MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide
ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a pe...
Definition: cv.hpp:5274
MS_SCION_TQ
SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
Definition: cv.hpp:7179
MS_isotopic_pattern_area
isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e...
Definition: cv.hpp:5793
MS_Discrete_Mass_Spectrum
Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contai...
Definition: cv.hpp:561
MS_Savitzky_Golay_smoothing
Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree...
Definition: cv.hpp:2865
MS_DFS
DFS: Thermo Scientific DFS HR GC-MS.
Definition: cv.hpp:2439
UNIMOD_ICAT_G_2H_8_
ICAT-G:2H(8): Gygi ICAT(TM) d8.
Definition: cv.hpp:7878
MS_PIA_XML_format
PIA XML format: A compilation of search engine results in the PIA XML format.
Definition: cv.hpp:7455
UO_cubic_decimeter
cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3]...
Definition: cv.hpp:11124
UNIMOD_CoenzymeA
CoenzymeA: Cysteine modified Coenzyme A.
Definition: cv.hpp:8343
MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
Definition: cv.hpp:5070
UNIMOD_CuSMo
CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
Definition: cv.hpp:8718
UO_parts_per_billion
parts per billion: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:11328
UNIMOD_Cys__Ala
Cys->Ala: Cys->Ala substitution.
Definition: cv.hpp:9918
MS_search_engine_specific_score
search engine specific score: Search engine specific scores.
Definition: cv.hpp:3765
UO_minute
minute: A time unit which is equal to 60 seconds.
Definition: cv.hpp:10917
UNIMOD_BisANS
BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
Definition: cv.hpp:8832
UO_count_per_nanomolar
count per nanomolar: A rate unit which is equal to one over one nanomolar.
Definition: cv.hpp:11670
UNIMOD_Hypusine
Hypusine: Hypusine.
Definition: cv.hpp:8553
MS_daly_detector
daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
Definition: cv.hpp:489
MS_Data_Explorer
Data Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2061
MS_protein_attribute
protein attribute: An nonphysical attribute describing a specific protein.
Definition: cv.hpp:3201
MS_atmospheric_pressure_chemical_ionization
atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressur...
Definition: cv.hpp:327
MS_data_file_content
data file content: Describes the data content on the file.
Definition: cv.hpp:2025
UNIMOD_iTRAQ4plex114
iTRAQ4plex114: Accurate mass for 114.
Definition: cv.hpp:8862
MS_PEAKS_Online
PEAKS Online: PEAKS Online software for high throughput data analysis.
Definition: cv.hpp:6105
MS_neptune
neptune: ThermoFinnigan NEPTUNE MS.
Definition: cv.hpp:744
MS_ProteomeDiscoverer_Xtract_Highest_Charge
ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution ...
Definition: cv.hpp:5154
MS_6310_Ion_Trap_LC_MS
6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1863
MS_analog_ion
analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the th...
Definition: cv.hpp:1485
MS_error_on_absolute_quantity
error on absolute quantity: Error on absolute quantity.
Definition: cv.hpp:3720
MS_pI
pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an elect...
Definition: cv.hpp:3132
MS_param__z_2_ion
param: z+2 ion: Parameter information, type of product: z+2 ion.
Definition: cv.hpp:4467
UNIMOD_Diethylphosphate
Diethylphosphate: O-Diethylphosphorylation.
Definition: cv.hpp:9330
MS_septum
septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.
Definition: cv.hpp:321
UNIMOD_Palmitoyl
Palmitoyl: Palmitoylation.
Definition: cv.hpp:7965
UO_kelvin
kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic...
Definition: cv.hpp:10860
UNIMOD_Val__Lys
Val->Lys: Val->Lys substitution.
Definition: cv.hpp:10395
MS_spectra_combination
spectra combination: Method used to combine the mass spectra.
Definition: cv.hpp:2166
UNIMOD_Arg__Trp
Arg->Trp: Arg->Trp substitution.
Definition: cv.hpp:9153
MS_Mascot_DAT_format
Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
Definition: cv.hpp:3879
MS_distinct_peptide_level_FDRScore
distinct peptide-level FDRScore: FDRScore for distinct peptides once redundant identifications of the...
Definition: cv.hpp:7371
MS_Xevo_TQ_S
Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
Definition: cv.hpp:5631
MS_MassHunter_Metabolite_ID
MassHunter Metabolite ID: Software for identification of metabolites.
Definition: cv.hpp:2562
UNIMOD_phenylsulfonylethyl
phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
Definition: cv.hpp:10761
MS_selected_precursor_m_z
selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
Definition: cv.hpp:6990
MS_number_of_sequences_searched
number of sequences searched: The number of sequences (proteins / nucleotides) from the database sear...
Definition: cv.hpp:3432
MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold
ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that...
Definition: cv.hpp:6558
MS_ACQUITY_UPLC_H_Class_Bio
ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
Definition: cv.hpp:5544
MS_neutral_loss_OBSOLETE
neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
Definition: cv.hpp:3513
UO_einstein_per_square_meter_per_second
einstein per square meter per second: An irradiance unit which is equal to one einstein per square me...
Definition: cv.hpp:11286
UNIMOD_Ub_amide
Ub-amide: Ub amide probe addition.
Definition: cv.hpp:10527
UNIMOD_Label_13C_6_15N_1_
Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
Definition: cv.hpp:9306
MS_peptide_consensus_list_attribute
peptide consensus list attribute: Attribute describing a peptide consensus list.
Definition: cv.hpp:6633
UO_millimole
millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
Definition: cv.hpp:10944
MS_MAT95XP_Trap
MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
Definition: cv.hpp:735
MS_Progenesis_manual_alignment
Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors...
Definition: cv.hpp:5853
MS_pymzML
pymzML: Python module to interface mzML Data.
Definition: cv.hpp:5997
UNIMOD_Met__Ser
Met->Ser: Met->Ser substitution.
Definition: cv.hpp:10206
MS_submitter_keyword
submitter keyword: Keyword assigned by the data submitter.
Definition: cv.hpp:6036
MS_ProteomeDiscoverer_Maximum_Delta_Cn
ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
Definition: cv.hpp:6564
MS_boxcar_smoothing
boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with tw...
Definition: cv.hpp:2886
UNIMOD_2_nitrobenzyl
2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
Definition: cv.hpp:9852
MS_TSQ
TSQ: ThermoFinnigan TSQ MS.
Definition: cv.hpp:2766
MS_molecule_taxonomy
molecule taxonomy: The taxonomy of the resultant molecule from the search.
Definition: cv.hpp:3573
MS_precursor_recalculation
precursor recalculation: A process that recalculates existing precursor selected ions with one or mor...
Definition: cv.hpp:2859
MS_Linked_Scan_at_Constant_B2_E_OBSOLETE
Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates...
Definition: cv.hpp:1413
MS_Th_s
Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
Definition: cv.hpp:2964
UNIMOD_Asn__Asp
Asn->Asp: Asn->Asp substitution.
Definition: cv.hpp:9105
MS_QSTAR_Elite
QSTAR Elite: AB SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
Definition: cv.hpp:2484
UO_linear_density_unit
linear density unit: A density unit which is a standard measure of the mass exerting an influence on ...
Definition: cv.hpp:11367
UNIMOD_DTT_ST
DTT_ST: Dithiothreitol (DTT).
Definition: cv.hpp:9354
MS_secondary_electron_OBSOLETE
secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a ...
Definition: cv.hpp:1476
MS_custom_unreleased_software_tool
custom unreleased software tool: A software tool that has not yet been released. The value should des...
Definition: cv.hpp:2931
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5397
MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass
ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral l...
Definition: cv.hpp:5124
UNIMOD_Thr__Phe
Thr->Phe: Thr->Phe substitution.
Definition: cv.hpp:10368
UNIMOD_SUMO3549
SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
Definition: cv.hpp:9711
MS_Pro_ICAT
Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT. ...
Definition: cv.hpp:2523
UNIMOD_TransN_biotin
TransN-biotin: Transaminated Protein N-terminus biotinylated with biotin-hydrazide.
Definition: cv.hpp:10815
UNIMOD_Phe__Pro
Phe->Pro: Phe->Pro substitution.
Definition: cv.hpp:10047
MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search
ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between at...
Definition: cv.hpp:5214
MS_spectrum_interpretation
spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing t...
Definition: cv.hpp:3360
MS_possible_charge_state
possible charge state: A possible charge state of the ion in a situation where the charge of an ion i...
Definition: cv.hpp:2418
UNIMOD_Met__Cys
Met->Cys: Met->Cys substitution.
Definition: cv.hpp:10179
UNIMOD_Thr__Asp
Thr->Asp: Thr->Asp substitution.
Definition: cv.hpp:10362
UNIMOD_Xle__Glu
Xle->Glu: Leu/Ile->Glu substitution.
Definition: cv.hpp:10134
MS_family_member_protein
family member protein: A protein with significant homology to another protein, but some distinguishin...
Definition: cv.hpp:5031
MS_ISB_mzXML_format
ISB mzXML format: Institute of Systems Biology mzXML file format.
Definition: cv.hpp:2154
UO_picomolal
picomolal: A molality unit which is equal to 10^[-12] m.
Definition: cv.hpp:11040
MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins
ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications se...
Definition: cv.hpp:5364
MS_exponential
exponential: The mass scan is done in exponential mode.
Definition: cv.hpp:435
MS_6220_Time_of_Flight_LC_MS
6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:2541
MS_param__y_ion_H2O_DEPRECATED
param: y ion-H2O DEPRECATED:
Definition: cv.hpp:3762
MS_TLF
TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished b...
Definition: cv.hpp:1263
MS_protein_level_local_FDR
protein-level local FDR: Estimation of the local false discovery rate of proteins.
Definition: cv.hpp:7383
MS_liquid_secondary_ionization
liquid secondary ionization: The ionization of any species by the interaction of a focused beam of io...
Definition: cv.hpp:1602
MS_file_format
file format: Format of data files.
Definition: cv.hpp:4617
MS_enhanced_resolution_scan_OBSOLETE
enhanced resolution scan: Scan with enhanced resolution.
Definition: cv.hpp:2907
MS_group_representative
group representative: An arbitrary and optional flag applied to exactly one protein per group to indi...
Definition: cv.hpp:7500
MS_Empower
Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
Definition: cv.hpp:5637
UNIMOD_VFQQQTGG
VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
Definition: cv.hpp:9627
MS_DESI
DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization meth...
Definition: cv.hpp:6318
UO_image_resolution_unit
image resolution unit: An information unit which is a standard measure of the detail an image holds...
Definition: cv.hpp:11526
UNIMOD_Didehydroretinylidene
Didehydroretinylidene: 3,4-didehydroretinylidene.
Definition: cv.hpp:8688
MS_AMS
AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sa...
Definition: cv.hpp:972
MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions
ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for ...
Definition: cv.hpp:5307
MS_Paragon__background_correction
Paragon: background correction: The Paragon method setting that controls whether the 'Background Corr...
Definition: cv.hpp:7578
UNIMOD_Gln__Asp
Gln->Asp: Gln->Asp substitution.
Definition: cv.hpp:10287
MS_mass_analyzer_type
mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio...
Definition: cv.hpp:1758
MS_AXIMA_Assurance_Linear_MALDI_TOF
AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS...
Definition: cv.hpp:2343
UNIMOD_LG_anhyropyrrole
LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
Definition: cv.hpp:9672
MS_acquisition_software
acquisition software: Acquisition software.
Definition: cv.hpp:4605
UNIMOD_LeuArgGlyGly
LeuArgGlyGly: Ubiquitination.
Definition: cv.hpp:8871
UNIMOD_2_dimethylsuccinyl
2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
Definition: cv.hpp:10533
MS_Progenesis_protein_group_raw_abundance
Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Pr...
Definition: cv.hpp:7848
MS_raw_files_group_attribute
raw files group attribute: Attribute describing, how raw files build a raw file group.
Definition: cv.hpp:5724
MS_MRM_spectrum
MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corr...
Definition: cv.hpp:2241
UNIMOD_NO_SMX_SEMD
NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
Definition: cv.hpp:9378
MS_SEQUEST_deltacnstar
SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
Definition: cv.hpp:7038
UNIMOD_Pro__Pyrrolidone
Pro->Pyrrolidone: Pyrrolidone from Proline.
Definition: cv.hpp:8529
MS_MALDI_Synapt_G2_S_MS
MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
Definition: cv.hpp:5577
MS_completion_time
completion time: The time that a data processing action was finished.
Definition: cv.hpp:2757
MS_electrostatic_energy_analyzer
electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinder...
Definition: cv.hpp:1065
MS_nth_generation_product_ion
nth generation product ion: Serial product ions from dissociation of selected precursor ions where n ...
Definition: cv.hpp:1428
UO_micromole
micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
Definition: cv.hpp:10941
MS_Variance_stabilizing_normalization
Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.
Definition: cv.hpp:6921
UO_kilovolt
kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V...
Definition: cv.hpp:11562
MS_PIA_used_top_identifications_for_FDR
PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR...
Definition: cv.hpp:7470
MS_ProteinExtractor_MaxProteinMass
ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
Definition: cv.hpp:4524
UNIMOD_Propargylamine
Propargylamine: Propargylamine.
Definition: cv.hpp:9702
UNIMOD_Phe__His
Phe->His: Phe->His substitution.
Definition: cv.hpp:10035
UNIMOD_OxArgBiotinRed
OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced. ...
Definition: cv.hpp:8073
MS_three_sample_run
three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
Definition: cv.hpp:5715
UNIMOD_Biotin_Cayman_10141
Biotin:Cayman-10141: Was 15dB-biotin.
Definition: cv.hpp:8880
MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide
ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single i...
Definition: cv.hpp:5283
MS_NICI
NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negativ...
Definition: cv.hpp:1173
MS_PDA
PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visi...
Definition: cv.hpp:2376
MS_protein_level_statistical_threshold
protein-level statistical threshold: Estimated statistical threshold at protein-level.
Definition: cv.hpp:7746
UO_pressure_unit
pressure unit: A unit which is a standard measure of the force applied to a given area...
Definition: cv.hpp:11151
MS_protein_group_attribute
protein group attribute: Attribute describing a protein group.
Definition: cv.hpp:6627
UNIMOD_SulfanilicAcid
SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
Definition: cv.hpp:8349
MS_Mascot_PTM_site_assignment_confidence
Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct...
Definition: cv.hpp:6321
UNIMOD_Xlink_EGS
Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.
Definition: cv.hpp:9831
MS_TOPP_FeatureFinderIsotopeWavelet
TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a ...
Definition: cv.hpp:6792
MS_decoy_DB_from_IPI_rat_OBSOLETE
decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegic...
Definition: cv.hpp:4125
MS_esquire_6000
esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
Definition: cv.hpp:678
UNIMOD_Biotin_PEG_PRA
Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
Definition: cv.hpp:9561
MS_protein_level_p_value
protein-level p-value: Estimation of the p-value for proteins.
Definition: cv.hpp:5868
MS_Mascot_IncludeErrorTolerantMatches
Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide m...
Definition: cv.hpp:4224
MS_linear_OBSOLETE
linear: The mass scan is done in linear mode.
Definition: cv.hpp:438
UNIMOD_DAET
DAET: Phosphorylation to amine thiol.
Definition: cv.hpp:8208
MS_peptide_raw_area_OBSOLETE
peptide raw area: Peptide raw area.
Definition: cv.hpp:3696
MS_FWHM
FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half p...
Definition: cv.hpp:411
MS_PROTEINEER_dp
PROTEINEER dp: Bruker PROTEINEER dp software.
Definition: cv.hpp:2706
UNIMOD_Cys__Glu
Cys->Glu: Cys->Glu substitution.
Definition: cv.hpp:9924
MS_ANOVA_p_value
ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
Definition: cv.hpp:5817
UNIMOD_Pro__Pyrrolidinone
Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
Definition: cv.hpp:8505
UNIMOD_HydroxymethylOP
HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
Definition: cv.hpp:9537
UNIMOD_Ala__Pro
Ala->Pro: Ala->Pro substitution.
Definition: cv.hpp:8895
MS_photomultiplier
photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then a...
Definition: cv.hpp:516
MS_ESI
ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from ...
Definition: cv.hpp:348
MS_PeptideShaker_peptide_score
PeptideShaker peptide score: The probability based PeptideShaker peptide score.
Definition: cv.hpp:7695
UNIMOD_QEQTGG
QEQTGG: SUMOylation by SUMO-1.
Definition: cv.hpp:9522
MS_spectrum_title
spectrum title: A free-form text title describing a spectrum.
Definition: cv.hpp:2922
MS_Q_Exactive
Q Exactive: Thermo Scientific Q Exactive.
Definition: cv.hpp:5988
MS_full_width_at_half_maximum
full width at half-maximum: A measure of resolution represented as width of the peak at half peak hei...
Definition: cv.hpp:408
UO_molar
molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solut...
Definition: cv.hpp:11010
MS_MyriMatch
MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra...
Definition: cv.hpp:4998
MS_ProteinExtractor_IncludeIdentified
ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included...
Definition: cv.hpp:4518
UO_unit_of_normality
unit of normality: A unit of concentration which highlights the chemical nature of salts...
Definition: cv.hpp:11046
MS_high_intensity_threshold
high intensity threshold: Threshold above which some action is taken.
Definition: cv.hpp:2412
MS_linked_scan_at_constant_b_e_OBSOLETE
linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrom...
Definition: cv.hpp:1407
MS_number_of_molecular_hypothesis_considered
number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the nu...
Definition: cv.hpp:3837
MS_programmer
programmer: Programmer role.
Definition: cv.hpp:4071
std::multimap< std::string, CVID > otherRelations
Definition: cv.hpp:11720
UNIMOD_Trp__Ala
Trp->Ala: Trp->Ala substitution.
Definition: cv.hpp:10422
MS_Isotopologue_ion
Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constitu...
Definition: cv.hpp:1518
UO_watt
watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per seco...
Definition: cv.hpp:11166
MS_SCION_SQ
SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
Definition: cv.hpp:7176
UNIMOD_CAF
CAF: Sulfonation of N-terminus.
Definition: cv.hpp:8325
UNIMOD_Trp__Phe
Trp->Phe: Trp->Phe substitution.
Definition: cv.hpp:10431
MS_protein_value__mean_of_peptide_ratios
protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide rat...
Definition: cv.hpp:5835
UO_nanosievert
nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 1...
Definition: cv.hpp:11253
MS_dried_droplet_MALDI_matrix_preparation
dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
Definition: cv.hpp:3051
UNIMOD_SecNEM
SecNEM: N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:9855
UNIMOD_Hex_3_HexNAc_4_
Hex(3)HexNAc(4): Biantennary (-2 galactose).
Definition: cv.hpp:8403
UNIMOD_GIST_Quat_2H_9_
GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
Definition: cv.hpp:8010
MS_Agilent_instrument_model
Agilent instrument model: Agilent instrument model.
Definition: cv.hpp:1917
MS_Acquity_UPLC_FLR
Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
Definition: cv.hpp:3003
MS_SEQUEST_TopNumber
SEQUEST:TopNumber: Specify "number" as value of the CVParam.
Definition: cv.hpp:3624
MS_translation_table_description
translation table description: A URL that describes the translation table used to translate the nucle...
Definition: cv.hpp:4509
UNIMOD_Malonyl
Malonyl: Malonylation of C and S residues.
Definition: cv.hpp:9387
MS_array_detector
array detector: Detector comprising several ion collection elements, arranged in a line or grid where...
Definition: cv.hpp:1455
MS_percolator_score
percolator:score: Percolator:score.
Definition: cv.hpp:4722
MS_PRIDE_experiment_URI
PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
Definition: cv.hpp:6048
MS_32_bit_integer
32-bit integer: Signed 32-bit little-endian integer.
Definition: cv.hpp:2010
MS_Dionex_instrument_model
Dionex instrument model: Dionex instrument model.
Definition: cv.hpp:1920
MS_protein_level_e_value
protein-level e-value: Estimation of the e-value for proteins.
Definition: cv.hpp:5874
MS_non_identified_ion
non-identified ion: Non-identified ion.
Definition: cv.hpp:3999
MS_Trapper
Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
Definition: cv.hpp:2115
UNIMOD_Gln__Xle
Gln->Xle: Gln->Leu/Ile substitution.
Definition: cv.hpp:9147
UNIMOD_Gln__Met
Gln->Met: Gln->Met substitution.
Definition: cv.hpp:10296
MS_TOF_TOF_5800
TOF/TOF 5800: AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX TOF/TOF 5800 Analyz...
Definition: cv.hpp:4692
UNIMOD_His__Phe
His->Phe: His->Phe substitution.
Definition: cv.hpp:10101
UNIMOD_Nethylmaleimide_water
Nethylmaleimide+water: Nethylmaleimidehydrolysis.
Definition: cv.hpp:8430
UO_microvolt
microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6]...
Definition: cv.hpp:11565
MS_SEQUEST_sf
SEQUEST:sf: The SEQUEST result 'Sf'.
Definition: cv.hpp:3786
MS_BioAnalyst
BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
Definition: cv.hpp:2517
MS_transition
transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in com...
Definition: cv.hpp:3276
MS_zlib_compression
zlib compression: Zlib.
Definition: cv.hpp:2178
MS_proteomics_solution_1
proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
Definition: cv.hpp:765
MS_Mascot_RequireBoldRed
Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true...
Definition: cv.hpp:4218
MS_adiabatic_ionization
adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to prod...
Definition: cv.hpp:1560
MS_param__internal_yb_ion
param: internal yb ion: Parameter information, type of product: internal yb ion.
Definition: cv.hpp:4458
MS_consecutive_reaction_monitoring_OBSOLETE_1000244
consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in wh...
Definition: cv.hpp:1005
UNIMOD_Biotin_Thermo_21901_H2O
Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
Definition: cv.hpp:9873
MS_ProteoGrouper_PDH_score
ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetection...
Definition: cv.hpp:6993
MS_PRIDE_project_URI
PRIDE project URI: URI that allows the access to one project in the PRIDE database.
Definition: cv.hpp:6051
MS_DB_sequence_filter_pattern
DB sequence filter pattern: DB sequence filter pattern.
Definition: cv.hpp:4785
UO_cell_concentration_unit
cell concentration unit: A concentration unit which denotes the average cell number in a given volume...
Definition: cv.hpp:11418
MS_transmission_quadrupole_mass_spectrometer
transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods wh...
Definition: cv.hpp:1317
MS_ProteomeDiscoverer_Amanda_high_confidence_threshold
ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score...
Definition: cv.hpp:7239
MS_in_source_collision_induced_dissociation
in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excit...
Definition: cv.hpp:5895
UNIMOD_IMID_2H_4_
IMID:2H(4): IMID d4.
Definition: cv.hpp:8040
MS_MassIVE_dataset_identifier
MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer ...
Definition: cv.hpp:7752
UNIMOD_Met__Asn
Met->Asn: Met->Asn substitution.
Definition: cv.hpp:10197
MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder
ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlappi...
Definition: cv.hpp:5169
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_
Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.
Definition: cv.hpp:8187
MS_CRM_spectrum
CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and ...
Definition: cv.hpp:2223
UNIMOD_Asn__Met
Asn->Met: Asn->Met substitution.
Definition: cv.hpp:10230
MS_focal_plane_collector
focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously i...
Definition: cv.hpp:1464
UNIMOD_Iminobiotin
Iminobiotin: Iminobiotinylation.
Definition: cv.hpp:8022
UNIMOD_Cation_Ag
Cation:Ag: Replacement of proton by silver.
Definition: cv.hpp:9693
MS_binary_data_array
binary data array: A data array of values.
Definition: cv.hpp:1992
MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions
ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for ...
Definition: cv.hpp:5316
UO_millivolt
millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3...
Definition: cv.hpp:11559
UNIMOD_Methyl_2H_3_
Methyl:2H(3): Deuterated methyl ester.
Definition: cv.hpp:8379
MS_microchannel_plate_detector
microchannel plate detector: A thin plate that contains a closely spaced array of channels that each ...
Definition: cv.hpp:507
MS_surface_enhanced_laser_desorption_ionization
surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from ...
Definition: cv.hpp:1212
MS_msPrefix_precursor_recalculation
msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection ...
Definition: cv.hpp:2862
UNIMOD_Can_FP_biotin
Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
Definition: cv.hpp:8454
MS_ion_mobility_drift_time
ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass...
Definition: cv.hpp:7719
MS_TPP
TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS/MS proteomics d...
Definition: cv.hpp:7146
UNIMOD_Ala__Gln
Ala->Gln: Ala->Gln substitution.
Definition: cv.hpp:9906
UNIMOD_O_Isopropylmethylphosphonate
O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
Definition: cv.hpp:9342
MS_scan_number_only_nativeID_format
scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2847
MS_ProteoWizard_idconvert
ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics expe...
Definition: cv.hpp:6906
MS_SEQUEST_OutputLines
SEQUEST:OutputLines: Number of peptide results to show.
Definition: cv.hpp:3369
MS_single_ion_monitoring_OBSOLETE
single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scann...
Definition: cv.hpp:462
UNIMOD_ZGB
ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
Definition: cv.hpp:9510
MS_SEQUEST_out_folder
SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files...
Definition: cv.hpp:4005
MS_PEAKS_proteinScore
PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
Definition: cv.hpp:6117
UNIMOD_Fluoro
Fluoro: Fluorination.
Definition: cv.hpp:8097
UO_chroma_sampling_unit
chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial d...
Definition: cv.hpp:11529
MS_detector_attribute
detector attribute: Detector attribute recognized as a value.
Definition: cv.hpp:1890
UNIMOD_Biotin_Thermo_33033_H
Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
Definition: cv.hpp:10506
MS_frag__b_ion___NH3
frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia...
Definition: cv.hpp:3975
UNIMOD_Dimethyl_2H_6_
Dimethyl:2H(6): Dimethyl-Medium.
Definition: cv.hpp:10590
UNIMOD_Gln__Thr
Gln->Thr: Gln->Thr substitution.
Definition: cv.hpp:10305
MS______ALIV_____P_
(?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
Definition: cv.hpp:6135
MS_collision_quadrupole
collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to...
Definition: cv.hpp:1194
MS_Pro_ID
Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
Definition: cv.hpp:2520
MS_cross_linking_search
cross-linking search: Cross-linking search performed.
Definition: cv.hpp:7773
MS_Mascot
Mascot: The name of the Mascot search engine.
Definition: cv.hpp:3897
UNIMOD_Dimethyl_2H_4_13C_2_
Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
Definition: cv.hpp:8814
UNIMOD_His__Trp
His->Trp: His->Trp substitution.
Definition: cv.hpp:10122
UNIMOD_Met__Pro
Met->Pro: Met->Pro substitution.
Definition: cv.hpp:10200
MS_LOWESS_smoothing
LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted p...
Definition: cv.hpp:2868
MS_protein_group_level_local_FDR
protein group-level local FDR: Estimation of the local false discovery rate of protein groups...
Definition: cv.hpp:7401
UNIMOD_MicrocinC7
MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
Definition: cv.hpp:8700
UNIMOD_Ammonium
Ammonium: Replacement of proton with ammonium ion.
Definition: cv.hpp:9753
UNIMOD_HN3_mustard
HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
Definition: cv.hpp:10779
MS_fragment_mass_type_mono
fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
Definition: cv.hpp:4041
UNIMOD_Phycoerythrobilin
Phycoerythrobilin: Phycoerythrobilin.
Definition: cv.hpp:8571
UNIMOD_Pyridylacetyl
Pyridylacetyl: Pyridylacetyl.
Definition: cv.hpp:7908
UO_energy_unit
energy unit: A unit which is a standard measure of the work done by a certain force (gravitational...
Definition: cv.hpp:11157
MS_spectrum_from_database_string_nativeID_format
spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
Definition: cv.hpp:4842
MS_number_of_detector_counts
number of detector counts: The number of counted events observed in one or a group of elements of a d...
Definition: cv.hpp:579
MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE
Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that inco...
Definition: cv.hpp:1416
MS_Mascot_identity_threshold
Mascot:identity threshold: The Mascot result 'identity threshold'.
Definition: cv.hpp:4362
MS_Comet
Comet: Comet open-source sequence search engine developed at the University of Washington.
Definition: cv.hpp:7041
UNIMOD_GGQ
GGQ: SUMOylation leaving GlyGlyGln.
Definition: cv.hpp:10593
MS_TOPP_FeatureFinderMetabo
TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites...
Definition: cv.hpp:6795
UNIMOD_Phe__Tyr
Phe->Tyr: Phe->Tyr substitution.
Definition: cv.hpp:8973
UNIMOD_Ser__Arg
Ser->Arg: Ser->Arg substitution.
Definition: cv.hpp:9207
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spe...
Definition: cv.hpp:5142
MS_quantitation_software_comment_or_customizations
quantitation software comment or customizations: Quantitation software comment or any customizations ...
Definition: cv.hpp:5751
MS_Sequence_database_filters
Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
Definition: cv.hpp:4782
MS_ultima
ultima: IonSpec Ultima MS.
Definition: cv.hpp:807
MS_TOPP_NoiseFilterGaussian
TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
Definition: cv.hpp:6684
MS_Gaussian_smoothing
Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian f...
Definition: cv.hpp:2871
MS_chemical_compound_attribute
chemical compound attribute: A describable property of a chemical compound.
Definition: cv.hpp:3126
MS_LTQ_Orbitrap_Elite
LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
Definition: cv.hpp:5985
MS_Comet_expectation_value
Comet:expectation value: The Comet result 'Expectation value'.
Definition: cv.hpp:7059
MS_Shimadzu_MALDI_TOF_instrument_model
Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
Definition: cv.hpp:2313
UO_square_millimeter
square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]...
Definition: cv.hpp:11070
MS_SpectrumMill_SPI
SpectrumMill:SPI: SpectrumMill SPI score (%).
Definition: cv.hpp:4959
MS_DB_accession_filter_string
DB accession filter string: DB accession filter string.
Definition: cv.hpp:4788
UNIMOD_Amino
Amino: Tyrosine oxidation to 2-aminotyrosine.
Definition: cv.hpp:8466
MS_source_sprayer_type
source sprayer type: The source sprayer type.
Definition: cv.hpp:6063
MS_decoy_DB_from_IPI_human_OBSOLETE
decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens...
Definition: cv.hpp:4149
MS_high_intensity_data_point_removal
high intensity data point removal: The removal of very high intensity data points.
Definition: cv.hpp:2754
MS_sample_attribute
sample attribute: Sample properties that are associated with a value.
Definition: cv.hpp:2100
MS_ProteinScape_input_parameter
ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
Definition: cv.hpp:6591
MS_FI
FI (field ionization): The removal of electrons from any species by interaction with a high electric ...
Definition: cv.hpp:1092
UNIMOD_Val__Met
Val->Met: Val->Met substitution.
Definition: cv.hpp:9249
MS_ultraflex
ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
Definition: cv.hpp:810
UNIMOD_Hex_1_HexNAc_2_dHex_2_
Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
Definition: cv.hpp:8175
MS_denominator_data_type_attribute
denominator data type attribute: Attribute describing the data type of the denominator of a ratio...
Definition: cv.hpp:6744
UNIMOD_His__Ala
His->Ala: His->Ala substitution.
Definition: cv.hpp:10092
MS_ProteinScape_Gel
ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
Definition: cv.hpp:4095
MS_sample
sample: Terms to describe the sample.
Definition: cv.hpp:1812
MS_two_dimensional_gas_chromatography_with_fixed_modulation_time
two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography whe...
Definition: cv.hpp:6546
MS_MIKES
MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass s...
Definition: cv.hpp:1149
MS_multiple_stage_mass_spectrometry
multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ...
Definition: cv.hpp:1164
UNIMOD_Biotin_HPDP
Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
Definition: cv.hpp:8361
MS_max_peak_picking
max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to co...
Definition: cv.hpp:2946
MS_modification_specificity_peptide_N_term
modification specificity peptide N-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:3849
MS_micrOTOF_II
micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:4866
MS_ion_
ion?: An atomic or molecular species having a net positive or negative electric charge.
Definition: cv.hpp:1515
MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument
transition purported from an MS/MS spectrum on a different, specified instrument: The transition has ...
Definition: cv.hpp:3291
MS_PIA_PSM_sets_created
PIA:PSM sets created: Indicates whether PSM sets were created.
Definition: cv.hpp:7467
MS_minute_OBSOLETE
minute: Acquisition time in minutes.
Definition: cv.hpp:216
UNIMOD_GluGluGluGlu
GluGluGluGlu: Tetraglutamyl.
Definition: cv.hpp:8742
MS_ProteinExtractor_UseMascot
ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinE...
Definition: cv.hpp:4530
MS_centroid_spectrum
centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero...
Definition: cv.hpp:558
MS_focal_plane_array
focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultane...
Definition: cv.hpp:504
UNIMOD_Pro__pyro_Glu
Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
Definition: cv.hpp:8502
MS_linear_ion_trap
linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by...
Definition: cv.hpp:1281
UNIMOD_BHT
BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
Definition: cv.hpp:8205
MS_manual_validation
manual validation: Result of quality estimation: decision of a manual validation. ...
Definition: cv.hpp:3681
MS_database_nr
database nr: Non-redundant GenBank sequence database.
Definition: cv.hpp:3558
MS_SEQUEST_modeCV
SEQUEST:modeCV: SEQUEST Mode Input Parameters.
Definition: cv.hpp:3636
MS_MRM_transition_type
MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy...
Definition: cv.hpp:6294
UNIMOD_His__Pro
His->Pro: His->Pro substitution.
Definition: cv.hpp:9003
MS_TOPP_MapAlignerPoseClustering
TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clusteri...
Definition: cv.hpp:6735
MS_signal_to_noise_ratio
signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signa...
Definition: cv.hpp:5907
UNIMOD_Xle__Arg
Xle->Arg: Leu/Ile->Arg substitution.
Definition: cv.hpp:9072
MS_MIM_spectrum
MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the...
Definition: cv.hpp:2229
UO_kilogram_per_square_meter
kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms ...
Definition: cv.hpp:11082
UNIMOD_Arg__Met
Arg->Met: Arg->Met substitution.
Definition: cv.hpp:9171
MS_PIA_protein_inference_scoring
PIA:protein inference scoring: The used scoring method for the protein inference using PIA...
Definition: cv.hpp:7482
MS_pep_FDR_threshold
pep:FDR threshold: False-discovery rate threshold for peptides.
Definition: cv.hpp:4584
MS_SORI
SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotr...
Definition: cv.hpp:1239
MS_regular_expression_for_modification_localization_scoring
).
Definition: cv.hpp:7806
UNIMOD_Gln__Val
Gln->Val: Gln->Val substitution.
Definition: cv.hpp:10308
UNIMOD_NO_SMX_SIMD
NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
Definition: cv.hpp:9384
UNIMOD_Dihydroxyimidazolidine
Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
Definition: cv.hpp:9471
MS_3200_QTRAP
3200 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
Definition: cv.hpp:2472
MS_TOPP_PeptideIndexer
TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
Definition: cv.hpp:6870
MS_ProteomeDiscoverer_Minimal_peptide_probability
ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to ...
Definition: cv.hpp:5433
MS_inlet_attribute
inlet attribute: Inlet properties that are associated with a value.
Definition: cv.hpp:6405
UNIMOD_HexNAc_1_dHex_1_
HexNAc(1)dHex(1): HexNAc1dHex1.
Definition: cv.hpp:8133
MS_SMILES_string
SMILES string: The simplified molecular input line entry specification or SMILES is a specification f...
Definition: cv.hpp:3153
MS_penning_ionization
penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous spe...
Definition: cv.hpp:1617
UNIMOD_Difuran
Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction...
Definition: cv.hpp:10563
MS_SEQUEST_total_ions
SEQUEST:total ions: The SEQUEST result 'Total Ions'.
Definition: cv.hpp:3792
MS_TOPP_feature_finder
TOPP feature finder: Feature finder component of the TOPP software.
Definition: cv.hpp:6783
UO_momentum_unit
momentum unit: A unit which is a standard measure of the quantity of motion measured by the product o...
Definition: cv.hpp:10995
MS_Mascot_Parser
Mascot Parser: Mascot Parser was used to analyze the spectra.
Definition: cv.hpp:4680
UNIMOD_Glu__Cys
Glu->Cys: Glu->Cys substitution.
Definition: cv.hpp:9987
UNIMOD_Ala__Trp
Ala->Trp: Ala->Trp substitution.
Definition: cv.hpp:9912
MS_scan_direction
scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high...
Definition: cv.hpp:153
MS_mass_analyzer_attribute
mass analyzer attribute: Analyzer properties that are associated with a value.
Definition: cv.hpp:1887
UNIMOD_DiLeu4plex
DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
Definition: cv.hpp:10656
UNIMOD_Tyr__Cys
Tyr->Cys: Tyr->Cys substitution.
Definition: cv.hpp:9291
MS_trap_type_collision_induced_dissociation
trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a t...
Definition: cv.hpp:7707
MS_database_type_amino_acid
database type amino acid: Database contains amino acid sequences.
Definition: cv.hpp:3540
MS_Bruker_Daltonics_instrument_model
Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
Definition: cv.hpp:543
UNIMOD_Lys__Gly
Lys->Gly: Lys->Gly substitution.
Definition: cv.hpp:10155
MS_peptide_modification_details
peptide modification details: The children of this term can be used to describe modifications.
Definition: cv.hpp:4650
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr para...
Definition: cv.hpp:5379
MS_Amanda_AmandaScore
Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
Definition: cv.hpp:7248
MS_PeptideProphet
PeptideProphet: A program in the TPP that calculates PSM probabilities for MS/MS proteomics data sear...
Definition: cv.hpp:7152
UNIMOD_DeStreak
DeStreak: Cysteine mercaptoethanol.
Definition: cv.hpp:8391
MS_ProteinScape_second_round_Mascot
ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
Definition: cv.hpp:6156
MS_lab_personnel
lab personnel: Lab personnel role.
Definition: cv.hpp:4077
UNIMOD_Asp__Ser
Asp->Ser: Asp->Ser substitution.
Definition: cv.hpp:9978
UNIMOD_Bromo
Bromo: Bromination.
Definition: cv.hpp:8463
MS_mass_resolution
mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley betwee...
Definition: cv.hpp:132
UNIMOD_Cy3b_maleimide
Cy3b-maleimide: Fluorescent dye that labels cysteines.
Definition: cv.hpp:9456
MS_AXIMA_QIT
AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
Definition: cv.hpp:2331
MS_LCMS_2010EV
LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
Definition: cv.hpp:2322
MS_local_FDR
local FDR: Result of quality estimation: the local FDR at the current position of a sorted list...
Definition: cv.hpp:4023
UNIMOD_Tyr__Dha
Tyr->Dha: Dehydroalanine (from Tyrosine).
Definition: cv.hpp:8604
UO_gram_per_milliliter
gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the ...
Definition: cv.hpp:11337
MS_sequence_sub_set_protein
sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protei...
Definition: cv.hpp:5043
UNIMOD_Ala__Asp
Ala->Asp: Ala->Asp substitution.
Definition: cv.hpp:8892
MS_MS_GF
MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
Definition: cv.hpp:6429
MS_top_hat_baseline_reduction
top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations ...
Definition: cv.hpp:6252
CVID_Unknown
Definition: cv.hpp:96
UNIMOD_HMVK
HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
Definition: cv.hpp:8532
MS_Compass_Security_Pack
Compass Security Pack: Bruker compass Security Pack software.
Definition: cv.hpp:2664
MS_ion_neutral_complex
ion/neutral complex: A particular type of transition state that lies between precursor and product io...
Definition: cv.hpp:1707
UO_degree_celsius
degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zero...
Definition: cv.hpp:10905
UO_meter_per_second_per_second
meter per second per second: An acceleration unit which is equal to the acceleration an object changi...
Definition: cv.hpp:11055
MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions
ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching...
Definition: cv.hpp:5499
UO_microcurie
microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6...
Definition: cv.hpp:11259
UNIMOD_Gln__His
Gln->His: Gln->His substitution.
Definition: cv.hpp:9141
MS_percent_collision_energy_ramp_start
percent collision energy ramp start: Collision energy at the start of the collision energy ramp in pe...
Definition: cv.hpp:6942
MS_TOPP_PeakPickerHiRes
TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra...
Definition: cv.hpp:6693
MS_SI_OBSOLETE
SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface wi...
Definition: cv.hpp:1227
MS_XIC_area
XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition: cv.hpp:5829
UNIMOD_Thr__Val
Thr->Val: Thr->Val substitution.
Definition: cv.hpp:10380
MS_TOPP_OMSSAAdapter
TOPP OMSSAAdapter: Identifies MS/MS spectra using the external program OMSSA.
Definition: cv.hpp:6840
MS_molecular_ion
molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the ad...
Definition: cv.hpp:1527
MS_maldi_spot_identifier_OBSOLETE
maldi spot identifier: Maldi Spot Identifier.
Definition: cv.hpp:2112
MS_GenoTools
GenoTools: Bruker GenoTools software.
Definition: cv.hpp:2688
UNIMOD_Hex
Hex: Hexose.
Definition: cv.hpp:7947
MS_target_MRM_transition
target MRM transition (target SRM transition): A transition used to target a specific compound that m...
Definition: cv.hpp:6300
MS_role_type
role type: Role of a Person or Organization.
Definition: cv.hpp:4065
UO_molecule_count
molecule count: A dimensionless count unit which denotes the number of molecules. ...
Definition: cv.hpp:11394
MS_TSQ_Vantage
TSQ Vantage: TSQ Vantage.
Definition: cv.hpp:4776
UO_picogram
picogram: A mass unit which is equal to 10^[-12] g.
Definition: cv.hpp:10899
MS_LECO_software
LECO software: LECO software for data acquisition and analysis.
Definition: cv.hpp:5649
MS_direct_liquid_introduction
direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or des...
Definition: cv.hpp:1035
UNIMOD_Label_15N_4_
Label:15N(4): SILAC 15N(4).
Definition: cv.hpp:9567
UO_volt
volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
Definition: cv.hpp:11472
MS_mzQuantML_format
mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '...
Definition: cv.hpp:6516
MS_impact
impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:6522
MS_object_attribute
object attribute: Object Attribute.
Definition: cv.hpp:2097
UNIMOD_cGMP
cGMP: S-guanylation.
Definition: cv.hpp:9492
MS_PSM_level_local_FDR
PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches...
Definition: cv.hpp:7344
MS_ms_ms_search
ms-ms search: An ms/ms search (with fragment ions).
Definition: cv.hpp:3555
MS_charge_state_calculation
charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by...
Definition: cv.hpp:2853
UO_electric_potential_difference_unit
electric potential difference unit: A unit which is a standard measure of the work done per unit char...
Definition: cv.hpp:11469
MS_Progenesis_peptide_normalised_abundance
Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by ...
Definition: cv.hpp:5928
MS_MALDI_Synapt_HDMS
MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
Definition: cv.hpp:5580
MS_AA_sequence
AA sequence: The sequence is a amino acid sequence.
Definition: cv.hpp:4281
MS_MaxQuant_P_site_localization_probability
MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant sof...
Definition: cv.hpp:6216
MS_second_column_elution_time
second column elution time: The time of elution from the second chromatographic column in the chromat...
Definition: cv.hpp:6540
MS_anchor_protein
anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-se...
Definition: cv.hpp:5028
MS_Mascot_expectation_value
Mascot:expectation value: The Mascot result 'expectation value'.
Definition: cv.hpp:3822
UO_femtomole
femtomole: A substance unit equal to 10^[-15] mol.
Definition: cv.hpp:10953
MS_Mascot_ShowHomologousProteinsWithSamePeptides
Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins...
Definition: cv.hpp:4212
MS_autoflex_TOF_TOF
autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
Definition: cv.hpp:654
MS_Q_Tof_ultima
Q-Tof ultima: Waters oa-ToF based Q-Tof Ultima.
Definition: cv.hpp:774
MS_pwiz
pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
Definition: cv.hpp:2355
UNIMOD_Pro__Val
Pro->Val: Pro->Val substitution.
Definition: cv.hpp:10272
UNIMOD_Sulfide
Sulfide: Persulfide.
Definition: cv.hpp:8658
MS_distinct_peptide_level_q_value
distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identi...
Definition: cv.hpp:5859
MS_ProteinExtractor_PhenyxWeighting
ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the sea...
Definition: cv.hpp:4578
MS_PIA_Combined_FDRScore_calculated
PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA...
Definition: cv.hpp:7464
MS_scanning_method_OBSOLETE
scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experimen...
Definition: cv.hpp:159
MS_max_fold_change
max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e...
Definition: cv.hpp:5814
UNIMOD_O_Et_N_diMePhospho
O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
Definition: cv.hpp:10719
UNIMOD_G_H1
G-H1: Glyoxal-derived hydroimiadazolone.
Definition: cv.hpp:9507
MS_Paragon_expression_change_p_value
Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
Definition: cv.hpp:3813
MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions
ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative fac...
Definition: cv.hpp:5343
UO_speed_velocity_unit
speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in...
Definition: cv.hpp:11004
MS_Xevo_G2_S_Tof
Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
Definition: cv.hpp:7113
MS_scan_polarity
scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.
Definition: cv.hpp:1839
MS_Paragon__bias_correction
Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invok...
Definition: cv.hpp:7581
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order ...
Definition: cv.hpp:5112
MS_product_ion_m_z_error
product ion m/z error: The product ion m/z error.
Definition: cv.hpp:3960
UNIMOD_Gly__Lys
Gly->Lys: Gly->Lys substitution.
Definition: cv.hpp:10071
MS_MS2_tag_based_peptide_level_quantitation
MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
Definition: cv.hpp:6360
UNIMOD_a_type_ion
a-type-ion: ISD a-series (C-Term).
Definition: cv.hpp:8127
MS_ProteinScape_SearchEvent
ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
Definition: cv.hpp:4092
MS_TSQ_Quantum_Ultra
TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
Definition: cv.hpp:2769
MS_clustal_aln
clustal aln: ClustalW ALN (multiple alignment) format.
Definition: cv.hpp:4302
MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff
ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must ex...
Definition: cv.hpp:5346
MS_API_3000
API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
Definition: cv.hpp:645
UNIMOD_SulfoGMBS
SulfoGMBS: High molecular absorption label for proteins.
Definition: cv.hpp:9657
UNIMOD_Label_13C_4_15N_2__GlyGly
Label:13C(4)15N(2)+GlyGly: 13C(4) 15N(2) Lysine glygly.
Definition: cv.hpp:9615
MS_data_processing
data processing (data transformation): Terms used to describe types of data processing.
Definition: cv.hpp:1794
MS_Pepitome_MVH
Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5013
MS_MALDI
MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules t...
Definition: cv.hpp:360
MS_x_Tracker
x-Tracker: x-Tracker generic tool for quantitative proteomics.
Definition: cv.hpp:6657
MS_peptide_descriptions
peptide descriptions: Descriptions of peptides.
Definition: cv.hpp:4314
MS_ion_injection_time
ion injection time: The length of time spent filling an ion trapping device.
Definition: cv.hpp:3336
UNIMOD_Xle__Trp
Xle->Trp: Leu/Ile->Trp substitution.
Definition: cv.hpp:9054
MS_______E_E_
(?<=[^E]E): Regular expression for glutamyl endopeptidase.
Definition: cv.hpp:6141
MS_chromatography_OBSOLETE
chromatography: Chromatographic conditions used to obtain the sample.
Definition: cv.hpp:276
UNIMOD_3sulfo
3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
Definition: cv.hpp:9390
UNIMOD_PyridoxalPhosphate
PyridoxalPhosphate: Pyridoxal phosphate.
Definition: cv.hpp:7962
MS_____K_
(?<=K): Regular expression for Lys-C/P.
Definition: cv.hpp:4257
MS_confident_peptide_sequence_number
confident peptide sequence number: This counts the number of peptide sequences without regard to whet...
Definition: cv.hpp:3606
MS_Compass_OpenAccess
Compass OpenAccess: Bruker compass OpenAccess software.
Definition: cv.hpp:2661
MS_param__y_ion_NH3_DEPRECATED
param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammoni...
Definition: cv.hpp:3759
MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size
ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in...
Definition: cv.hpp:5199
MS_chromatogram_type
chromatogram type: Broad category or type of a chromatogram.
Definition: cv.hpp:2394
MS_ProteomeDiscoverer_Peptide_CTerminus
ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used duri...
Definition: cv.hpp:5289
MS_confidence_score
confidence score: Result of quality estimation: confidence score.
Definition: cv.hpp:3861
MS_unit_OBSOLETE
unit: Terms to describe units.
Definition: cv.hpp:1821
UNIMOD_Label_2H_3__Oxidation
Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
Definition: cv.hpp:10731
UNIMOD_Delta_H_2_C_2_
Delta:H(2)C(2): Acetaldehyde +26.
Definition: cv.hpp:8283
UNIMOD_Met__Trp
Met->Trp: Met->Trp substitution.
Definition: cv.hpp:10209
MS_external_reference_identifier
external reference identifier: An identifier/accession number to an external reference database...
Definition: cv.hpp:3183
MS_multiple_ion_monitoring_spectrum
multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2232
UNIMOD_Glu__Ala
Glu->Ala: Glu->Ala substitution.
Definition: cv.hpp:8946
UNIMOD_SUMO2135
SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
Definition: cv.hpp:9708
MS_instrument_attribute
instrument attribute: Instrument properties that are associated with a value.
Definition: cv.hpp:1938
UNIMOD_Arg__Gln
Arg->Gln: Arg->Gln substitution.
Definition: cv.hpp:9168
MS_gas_laser
gas laser: Laser which is powered by a gaseous medium.
Definition: cv.hpp:3093
MS_sum_of_MatchedFeature_values_OBSOLETE
sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quanti...
Definition: cv.hpp:5802
MS_staphylococcal_protease
staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3...
Definition: cv.hpp:6009
MS_spectral_counting_quantitation_analysis
spectral counting quantitation analysis: Spectral counting workflow (number of identified MS/MS spect...
Definition: cv.hpp:5763
MS_matrix_solution_concentration
matrix solution concentration: Concentration of the chemical solution used as matrix.
Definition: cv.hpp:3048
MS_absolute_quantitation_analysis
absolute quantitation analysis: Absolute quantitation analysis.
Definition: cv.hpp:7833
UNIMOD_2HPG
2HPG: Bis(hydroxphenylglyoxal) arginine.
Definition: cv.hpp:8220
MS_flow_injection_analysis
flow injection analysis: Sample is directly injected or infused into the ionization source...
Definition: cv.hpp:291
MS_TOPP_DTAExtractor
TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
Definition: cv.hpp:6750
MS_direct_insertion_probe
direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer io...
Definition: cv.hpp:1029
MS_PAnalyzer_indistinguishable_protein
PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are ex...
Definition: cv.hpp:6930
MS_MAT253
MAT253: ThermoFinnigan MAT253 MS.
Definition: cv.hpp:723
MS_SIFT
SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier ...
Definition: cv.hpp:1233
UNIMOD_Hydroxyfarnesyl
Hydroxyfarnesyl: Hydroxyfarnesyl.
Definition: cv.hpp:8544
MS_nanoACQUITY_UPLC_with_HDX_Technology
nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
Definition: cv.hpp:5559
MS_frag__internal_ya_ion
frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
Definition: cv.hpp:4347
MS_Xevo_Q_Tof
Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
Definition: cv.hpp:5610
UNIMOD_Val__Gly
Val->Gly: Val->Gly substitution.
Definition: cv.hpp:9258
MS_TOPP_MzTabExporter
TOPP MzTabExporter: Exports various XML formats to an mzTab file.
Definition: cv.hpp:6762
UNIMOD_Glucosylgalactosyl
Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
Definition: cv.hpp:8586
UNIMOD_CarboxymethylDMAP
CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
Definition: cv.hpp:10704
MS_number_of_peaks_used
number of peaks used: The number of peaks from the original peak list that are used to calculate the ...
Definition: cv.hpp:3675
MS_SEQUEST_sp
SEQUEST:sp: The SEQUEST result 'Sp' (protein).
Definition: cv.hpp:3777
UNIMOD_Phospho
Phospho: Phosphorylation.
Definition: cv.hpp:7899
MS_HCTultra_PTM
HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
Definition: cv.hpp:2613
MS_TOPP_IDRTCalibration
TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
Definition: cv.hpp:6867
MS_surface_ionization
surface ionization: The ionization of a neutral species when it interacts with a solid surface with a...
Definition: cv.hpp:1638
UNIMOD_Met__Phe
Met->Phe: Met->Phe substitution.
Definition: cv.hpp:10188
UO_volumetric_flow_rate_unit
volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes thr...
Definition: cv.hpp:11628
MS_mz5_format
mz5 format: mz5 file format, modelled after mzML.
Definition: cv.hpp:5898
MS_6120_Quadrupole_LC_MS
6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1851
MS_source_sprayer_model
source sprayer model: The source sprayer model.
Definition: cv.hpp:6069
MS_ProteinExtractor_input_parameter
ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
Definition: cv.hpp:6585
MS_SQID_score
SQID:score: The SQID result 'Score'.
Definition: cv.hpp:5916
MS_desorption_ionization
desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporiza...
Definition: cv.hpp:1023
UNIMOD_Thyroxine
Thyroxine: Tetraiodo.
Definition: cv.hpp:8601
MS_charge_inversion_mass_spectrum
charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a ...
Definition: cv.hpp:1374
UO_ug_disk
ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/conta...
Definition: cv.hpp:11649
MS_ChromaTOF_HRT_software
ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instrument...
Definition: cv.hpp:5886
MS_p_value__protein_diff_from_1_randomly__OBSOLETE
p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
Definition: cv.hpp:3714
MS_Shimadzu_Biotech_nativeID_format
Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInt...
Definition: cv.hpp:3342
MS_SEQUEST_Full
SEQUEST:Full:
Definition: cv.hpp:3639
MS_IE
IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to...
Definition: cv.hpp:894
MS_Progenesis_protein_normalised_abundance
Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by ...
Definition: cv.hpp:5925
UO_picometer
picometer: A length unit which is equal to 10^[-12] m.
Definition: cv.hpp:10884
MS_TOPP_PrecursorIonSelector
TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results...
Definition: cv.hpp:6873
MS_Expect_value
Expect value: Result of quality estimation: Expect value.
Definition: cv.hpp:3858
MS_TEMPUS_TOF
TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
Definition: cv.hpp:795
UNIMOD_Ser__Lys
Ser->Lys: Ser->Lys substitution.
Definition: cv.hpp:10347
MS_charge_inversion_reaction
charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the produ...
Definition: cv.hpp:1662
MS_Pegasus_HRT
Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:5658
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection
ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for ...
Definition: cv.hpp:5091
UO_mass_percentage
mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixtur...
Definition: cv.hpp:11307
UNIMOD_Label_13C_9_
Label:13C(9): 13C(9) Silac label.
Definition: cv.hpp:8211
MS_ProteoGrouper_PAG_score
ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mz...
Definition: cv.hpp:6996
MS_Paragon_special_factor
Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors'...
Definition: cv.hpp:7632
MS_report_only_spectra_assigned_to_identified_proteins
report only spectra assigned to identified proteins: Flag indicating to report only the spectra assig...
Definition: cv.hpp:4962
MS_micrOTOFcontrol
micrOTOFcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2694
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr para...
Definition: cv.hpp:5382
UNIMOD_Phe__Xle
Phe->Xle: Phe->Leu/Ile substitution.
Definition: cv.hpp:8970
UO_substance_unit
substance unit: A unit which is a standardised quantity of an element or compound with uniform compos...
Definition: cv.hpp:10842
UNIMOD_FMN
FMN: O3-(riboflavin phosphoryl).
Definition: cv.hpp:8712
PWIZ_API_DECL bool operator==(const TruncatedLorentzianParameters &t, const TruncatedLorentzianParameters &u)
UNIMOD_Dethiomethyl
Dethiomethyl: Prompt loss of side chain from oxidised Met.
Definition: cv.hpp:8847
MS_micrOTOF_Q_II
micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI. ...
Definition: cv.hpp:2628
MS_QIT
QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional...
Definition: cv.hpp:390
MS_ACQUITY_UPLC_H_Class
ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
Definition: cv.hpp:5541
MS_PEFF_format
PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format...
Definition: cv.hpp:4626
MS_PIA_protein_inference_used_PSMs
PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inf...
Definition: cv.hpp:7488
MS_ion_trap
ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combin...
Definition: cv.hpp:1125
MS_Formic_acid
Formic_acid: Formic acid.
Definition: cv.hpp:4176
MS_autoflex_II
autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
Definition: cv.hpp:651
MS_6410_Triple_Quadrupole_LC_MS
6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:1875
MS_full_scan_OBSOLETE
full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range...
Definition: cv.hpp:1947
UO_meter
meter: A length unit which is equal to the length of the path traveled by light in vacuum during a ti...
Definition: cv.hpp:10848
UO_watt_hour
watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt ...
Definition: cv.hpp:11487
MS_product_ion_m_z
product ion m/z: The m/z of the product ion.
Definition: cv.hpp:3948
MS_SSQ_7000
SSQ 7000: ThermoFinnigan SSQ 7000 MS.
Definition: cv.hpp:2760
UNIMOD_3_deoxyglucosone
3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
Definition: cv.hpp:9675
MS_modification_parameters
modification parameters: Modification parameters for the search engine run.
Definition: cv.hpp:3495
MS_MaxQuant_PTM_Score
MaxQuant:PTM Score: The PTM score from MaxQuant software.
Definition: cv.hpp:6207
MS_software_specific_input_parameter
software specific input parameter: Software specific input parameter.
Definition: cv.hpp:6603
MS_proton_affinity
proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change...
Definition: cv.hpp:945
MS_4800_Plus_MALDI_TOF_TOF
4800 Plus MALDI TOF/TOF: AB SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer...
Definition: cv.hpp:2475
MS_method_file_format
method file format: Attribute describing a method file format.
Definition: cv.hpp:6672
MS_spectrum_title_OBSOLETE
spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from diff...
Definition: cv.hpp:4488
MS_protein_ratio
protein ratio: Protein ratio.
Definition: cv.hpp:3708
UNIMOD_Label_13C_4__Oxidation
Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
Definition: cv.hpp:10545
MS_internal_peptide_reference_used
internal peptide reference used: States whether an internal peptide reference is used or not in absol...
Definition: cv.hpp:7836
MS_partial_charge_transfer_reaction
partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all...
Definition: cv.hpp:1737
MS_Pegasus
Pegasus: LECO GC time-of-flight mass spectrometer.
Definition: cv.hpp:5664
UNIMOD_Trp__Hydroxykynurenin
Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
Definition: cv.hpp:8484
MS_Thermo_nativeID_format
Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumb...
Definition: cv.hpp:2823
MS_low_energy_collisions
low energy collisions: A collision between an ion and neutral species with translational energy appro...
Definition: cv.hpp:1719
MS_FAIMS
FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two ...
Definition: cv.hpp:1080
MS_decoy_MRM_transition
decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample an...
Definition: cv.hpp:6306
UNIMOD_Gln__Cys
Gln->Cys: Gln->Cys substitution.
Definition: cv.hpp:10284
UNIMOD_Tyr__Ala
Tyr->Ala: Tyr->Ala substitution.
Definition: cv.hpp:10461
MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search
ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
Definition: cv.hpp:5196
UNIMOD_Val__Xle
Val->Xle: Val->Leu/Ile substitution.
Definition: cv.hpp:9255
MS_pulse_duration
pulse duration: Describes how long the laser beam was emitted from the laser device.
Definition: cv.hpp:3084
MS_charge_stripping
charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal...
Definition: cv.hpp:1011
UNIMOD_BHTOH
BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
Definition: cv.hpp:8790
UO_picomole
picomole: A substance unit equal to 10^[-12] mol.
Definition: cv.hpp:10950
MS_M_LDI_LR
M LR: Waters oa-ToF based MALDI LR.
Definition: cv.hpp:720
UNIMOD_ISD_z_2_ion
ISD_z+2_ion: ISD (z+2)-series.
Definition: cv.hpp:9756
MS_MS_MS
MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically c...
Definition: cv.hpp:1161
UO_frequency_unit
frequency unit: A unit which is a standard measure of the number of repetitive actions in a particula...
Definition: cv.hpp:11139
UNIMOD_Hex_2_
Hex(2): Lactosylation.
Definition: cv.hpp:8817
MS_PeptideShaker_PSM_score
PeptideShaker PSM score: The probability based PeptideShaker PSM score.
Definition: cv.hpp:7689
MS_MS_GF_RawScore
MS-GF:RawScore: MS-GF raw score.
Definition: cv.hpp:6438
MS_reporter_ion_raw_value
reporter ion raw value: Intensity (or area) of MS/MS reporter ion (e.g. iTraq).
Definition: cv.hpp:5823
UO_unit_per_milliliter
unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amo...
Definition: cv.hpp:11352
MS_Proteinscape_spectra
Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
Definition: cv.hpp:4827
MS_sample_plate
sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
Definition: cv.hpp:6072
MS_tab_delimited_text_format
tab delimited text format: A file format that has two or more columns of tabular data where each colu...
Definition: cv.hpp:3297
MS_Progenesis_feature_intensity
Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS...
Definition: cv.hpp:5943
MS_TOFCalibration
TOFCalibration: Applies time of flight calibration.
Definition: cv.hpp:2814
MS_electron_energy_obsolete_OBSOLETE
electron energy obsolete: The potential difference through which electrons are accelerated before the...
Definition: cv.hpp:873
UNIMOD_Cys__Asp
Cys->Asp: Cys->Asp substitution.
Definition: cv.hpp:9921
UNIMOD_His__Arg
His->Arg: His->Arg substitution.
Definition: cv.hpp:9012
MS_single_peak_list_nativeID_format
single peak list nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:2844
UNIMOD_Cys__Val
Cys->Val: Cys->Val substitution.
Definition: cv.hpp:9951
MS_IDMS_OBSOLETE
IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an iso...
Definition: cv.hpp:900
UO_electric_field_strength_unit
electric field strength unit: The electric field strength is a unit which is a measure of the potenti...
Definition: cv.hpp:11619
UNIMOD_dHex_1_Hex_2_
dHex(1)Hex(2): Hex2dHex1.
Definition: cv.hpp:10740
MS_NCBI___p_
NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
Definition: cv.hpp:4299
UNIMOD_His__Tyr
His->Tyr: His->Tyr substitution.
Definition: cv.hpp:9006
MS_translation_start_codons
translation start codons: The translation start codons used to translate the nucleotides to amino aci...
Definition: cv.hpp:4470
UNIMOD_Label_2H_6_15N_1_
Label:2H(6)15N(1): Label:2H(6)15N(1).
Definition: cv.hpp:10821
MS_MS_Numpress_linear_prediction_compression
MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compressio...
Definition: cv.hpp:7227
MS_quadrupole_ion_trap
quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion t...
Definition: cv.hpp:384
MS_ultraflex_III_TOF_TOF
ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
Definition: cv.hpp:2631
MS_BioTools
BioTools: Bruker software for data analysis.
Definition: cv.hpp:2637
MS_MSFit_Mowse_score
MSFit:Mowse score: The MSFit Mowse score.
Definition: cv.hpp:4749
MS_SCiLS_Lab
SCiLS Lab: SCiLS Lab software.
Definition: cv.hpp:7443
MS_ion_kinetic_energy_spectrometry
ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according ...
Definition: cv.hpp:1101
UNIMOD_Asp__Thr
Asp->Thr: Asp->Thr substitution.
Definition: cv.hpp:9981
MS_PSM_level_combined_FDRScore
PSM-level combined FDRScore: Combined FDRScore for peptide spectrum matches specifically obtained for...
Definition: cv.hpp:7359
MS_BaselineFilter
BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. ...
Definition: cv.hpp:2775
MS_multiphoton_ionization
multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are ab...
Definition: cv.hpp:924
MS_NA_sequence
NA sequence: The sequence is a nucleic acid sequence.
Definition: cv.hpp:4278
MS_isolation_width_OBSOLETE
isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selec...
Definition: cv.hpp:168
MS_conversion_software
conversion software: Computer software primarily designed to convert data represented in one format t...
Definition: cv.hpp:7290
MS_lower_score_better
lower score better: Indicates that a lower score is better.
Definition: cv.hpp:6615
MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this
ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer...
Definition: cv.hpp:5517
MS_microTOF_LC
microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:741
MS_ionization_mode_OBSOLETE
ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer...
Definition: cv.hpp:126
MS_probability_for_proteins
probability for proteins: Probability that a specific protein sequence has been correctly identified ...
Definition: cv.hpp:7392
MS_GENOLINK
GENOLINK: Bruker GENOLINK software.
Definition: cv.hpp:2685
UNIMOD_ExacTagThiol
ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
Definition: cv.hpp:9369
UNIMOD_UgiJoullieProGly
UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
Definition: cv.hpp:10569
MS_Phenyx_MaxPepPvalue
Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identific...
Definition: cv.hpp:4404
MS_TOPP_ConsensusID
TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identif...
Definition: cv.hpp:6852
MS_LCMS_IT_TOF
LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
Definition: cv.hpp:2319
MS_intensity_normalization
intensity normalization: Normalization of data point intensities.
Definition: cv.hpp:4698
MS_SEQUEST_expectation_value
SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
Definition: cv.hpp:3783
UO_luminous_intensity_unit
luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted ...
Definition: cv.hpp:10845
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after...
Definition: cv.hpp:6534
MS_data_processing_parameter
data processing parameter: Data processing parameter used in the data processing performed on the dat...
Definition: cv.hpp:2409
MS_ProteinExtractor_MaxNumberOfProteins
ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider. ...
Definition: cv.hpp:4521
MS_axial_ejection_linear_ion_trap
axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the ...
Definition: cv.hpp:369
MS_detector_acquisition_mode
detector acquisition mode: Method by which detector signal is acquired by the data system...
Definition: cv.hpp:183
MS_quadrupole
quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of...
Definition: cv.hpp:381
UNIMOD_Gln__pyro_Glu
Gln->pyro-Glu: Pyro-glu from Q.
Definition: cv.hpp:7917
UNIMOD_Arg__Glu
Arg->Glu: Arg->Glu substitution.
Definition: cv.hpp:10323
UNIMOD_Cy3_maleimide
Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
Definition: cv.hpp:10698
UNIMOD_Formyl
Formyl: Formylation.
Definition: cv.hpp:8085
UNIMOD_Ub_fluorescein
Ub-fluorescein: Ub Fluorescein probe addition.
Definition: cv.hpp:10530
MS_chemi_ionization
chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an i...
Definition: cv.hpp:1578
MS_includes_supersede_excludes
includes supersede excludes: A priority setting specifying that included targets have priority over t...
Definition: cv.hpp:3315
MS_PSM_level_FDRScore
PSM-level FDRScore: FDRScore for peptide spectrum matches.
Definition: cv.hpp:7356
MS_Phenyx_Scoring_Model
Phenyx:Scoring Model: The selected scoring model in Phenyx.
Definition: cv.hpp:4377
MS_6330_Ion_Trap_LC_MS
6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1869
MS_tandem_mass_spectrometer
tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry...
Definition: cv.hpp:1314
UNIMOD_dichlorination
dichlorination: Dichlorination.
Definition: cv.hpp:9642
UNIMOD_Bacillosamine
Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
Definition: cv.hpp:9600
MS_numerator_data_type_attribute
numerator data type attribute: Attribute describing the data type of the numerator of a ratio...
Definition: cv.hpp:6741
UO_newton_per_meter
newton per meter: A surface tension unit which is equal to one newton per meter.
Definition: cv.hpp:11580
UO_catalytic__activity__concentration_unit
catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amou...
Definition: cv.hpp:11424
MS_LTQ_Orbitrap_Velos
LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
Definition: cv.hpp:5481
MS_ITQ_1100
ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
Definition: cv.hpp:2430
UNIMOD_Gluconoylation
Gluconoylation: Gluconoylation.
Definition: cv.hpp:10689
MS_cleavage_agent_details
cleavage agent details: Details of cleavage agent (enzyme).
Definition: cv.hpp:3465
MS_beta_cleavage
beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the...
Definition: cv.hpp:1653
MS_GPS_Explorer
GPS Explorer: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2499
MS_multiple_peak_list_nativeID_format
multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
Definition: cv.hpp:2841
UNIMOD_IDEnT
IDEnT: Isotope Distribution Encoded Tag.
Definition: cv.hpp:9399
UNIMOD_Trp__Cys
Trp->Cys: Trp->Cys substitution.
Definition: cv.hpp:9264
MS_Phenyx_AC
Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
Definition: cv.hpp:4413
UO_kilogram_per_meter
kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided...
Definition: cv.hpp:11370
MS_MSQuant
MSQuant: MSQuant software.
Definition: cv.hpp:6201
MS_retention_time_s__OBSOLETE
retention time(s): Retention time of the spectrum from the source file.
Definition: cv.hpp:3648
MS_DB_filter_on_accession_numbers
DB filter on accession numbers: Filtering applied specifically by accession number pattern...
Definition: cv.hpp:3408
MS_Paragon__instrument_setting
Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level...
Definition: cv.hpp:7563
MS_SEND
SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the mat...
Definition: cv.hpp:1221
MS_customization
customization: Free text description of a single customization made to the instrument; for several mo...
Definition: cv.hpp:198
MS_molecular_formula
molecular formula: A chemical compound formula expressing the number of atoms of each element present...
Definition: cv.hpp:3147
MS_MS_GF_EValue
MS-GF:EValue: MS-GF E-value.
Definition: cv.hpp:6450
UNIMOD_Methyl_PEO12_Maleimide
Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
Definition: cv.hpp:9552
UNIMOD_LG_Hlactam_K
LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
Definition: cv.hpp:8805
UO_volt_per_meter
volt per meter: The volt per meter is a unit of electric field strength equal to the a potential diff...
Definition: cv.hpp:11622
MS_collision_gas_pressure
collision gas pressure: The gas pressure of the collision gas used for collisional excitation...
Definition: cv.hpp:3156
MS_XCMS
XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data...
Definition: cv.hpp:4989
MS_transition_optimized_on_specified_instrument
transition optimized on specified instrument: The transition has been optimized by direct injection o...
Definition: cv.hpp:3285
UO_electronvolt
electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electro...
Definition: cv.hpp:11616
UNIMOD_SMCC_maleimide
SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.
Definition: cv.hpp:9597
UNIMOD_cGMP_RMP_loss
cGMP+RMP-loss: S-guanylation-2.
Definition: cv.hpp:9495
MS_peptide_passes_threshold
peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the thresho...
Definition: cv.hpp:7791
MS_MIDAS_Workflow_Designer
MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2535
MS_PIA_protein_inference_used_score
PIA:protein inference used score: The used base score for the protein inference using PIA...
Definition: cv.hpp:7485
MS_MALDI_Synapt_G2_HDMS
MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
Definition: cv.hpp:5568
MS_Xcalibur
Xcalibur: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2049
UNIMOD_Propionamide
Propionamide: Acrylamide adduct.
Definition: cv.hpp:7905
MS_ClinProTools
ClinProTools: Bruker ClinProTools software.
Definition: cv.hpp:2649
UO_viscosity_unit
viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow...
Definition: cv.hpp:11586
UNIMOD_Carboxy__Thiocarboxy
Carboxy->Thiocarboxy: Thiocarboxylic acid.
Definition: cv.hpp:8655
MS_Surveyor_MSQ
Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
Definition: cv.hpp:786
UNIMOD_Propyl
Propyl: Propyl.
Definition: cv.hpp:10626
MS_Paragon_expression_error_factor
Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
Definition: cv.hpp:3810
MS_association_reaction
association reaction: The reaction of an ion with a neutral species in which the reactants combine to...
Definition: cv.hpp:1647
MS_peak_area_OBSOLETE
peak area: Area of MS1 peak (e.g. SILAC, 15N).
Definition: cv.hpp:5790
UO_normal
normal: A unit of concentration which is one gram equivalent of a solute per liter of solution...
Definition: cv.hpp:11049
UNIMOD_Hex_1_HexNAc_2_dHex_1_
Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
Definition: cv.hpp:8163
UNIMOD_PyruvicAcidIminyl
PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
Definition: cv.hpp:8661
MS_Linked_Scan_at_Constant_E2_V_OBSOLETE
Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at lea...
Definition: cv.hpp:1410
MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions
ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching...
Definition: cv.hpp:5493
UNIMOD_Cys__Gln
Cys->Gln: Cys->Gln substitution.
Definition: cv.hpp:9945
MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE
ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of ...
Definition: cv.hpp:5250
MS_ProteinScape
ProteinScape: Bruker ProteinScape software.
Definition: cv.hpp:2718
MS_6130_Quadrupole_LC_MS
6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1854
MS_API_2000
API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
Definition: cv.hpp:642
UO_candela_per_square_meter
candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radi...
Definition: cv.hpp:11079
MS_ProteomeDiscoverer_MS_Order_OBSOLETE
ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS/MS=MS2 ... MS10).
Definition: cv.hpp:5085
UNIMOD_Label_18O_1_
Label:18O(1): O18 Labeling.
Definition: cv.hpp:8292
MS_dissociation_method
dissociation method: Fragmentation method used for dissociation or fragmentation. ...
Definition: cv.hpp:246
UO_nanovolt
nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12]...
Definition: cv.hpp:11568
UO_ampere
ampere: An electric current unit which is equal to the constant current which, if maintained in two s...
Definition: cv.hpp:10857
MS_IdentityE_Score
IdentityE Score: Waters IdentityE peptide score.
Definition: cv.hpp:4947
MS_ABI_WIFF_format
ABI WIFF format: Applied Biosystems WIFF file format.
Definition: cv.hpp:2142
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses
ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks ar...
Definition: cv.hpp:5133
UNIMOD_Methyl_2H_3__Acetyl_2H_3_
Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:10728
UNIMOD_Diethyl
Diethyl: Diethylation, analogous to Dimethylation.
Definition: cv.hpp:8829
MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score
ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability...
Definition: cv.hpp:5262
UNIMOD_Val__Thr
Val->Thr: Val->Thr substitution.
Definition: cv.hpp:10413
MS_distinct_peptide_level_global_FNR
distinct peptide-level global FNR: Estimation of the global false negative rate for distinct peptides...
Definition: cv.hpp:7677
UNIMOD_Asp__Lys
Asp->Lys: Asp->Lys substitution.
Definition: cv.hpp:9963
MS_EI_OBSOLETE
EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically acc...
Definition: cv.hpp:342
MS_PSD
PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where p...
Definition: cv.hpp:606
MS_frag__z_ion___NH3
frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
Definition: cv.hpp:4800
UNIMOD_Ser__Cys
Ser->Cys: Ser->Cys substitution.
Definition: cv.hpp:9204
UNIMOD_Thr__Pro
Thr->Pro: Thr->Pro substitution.
Definition: cv.hpp:9228
UO_milliliter_per_liter
milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of sol...
Definition: cv.hpp:11439
MS_SEQUEST_sort_by_Sp
SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
Definition: cv.hpp:3525
UNIMOD_Xlink_SSD
Xlink:SSD: Covalent modification of lysine by cross-linking reagent.
Definition: cv.hpp:8328
MS_Paragon_total_protscore
Paragon:total protscore: The Paragon result 'Total ProtScore'.
Definition: cv.hpp:3801
MS_leukocyte_elastase
leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
Definition: cv.hpp:6000
MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE
ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
Definition: cv.hpp:5073
MS_Mascot_total_ions
Mascot:total ions: The Mascot result 'Total ions'.
Definition: cv.hpp:3828
MS_CompassXtract
CompassXtract: Bruker software library for data access.
Definition: cv.hpp:2670
MS_peptide_PSM_count
peptide PSM count: The number of MS/MS spectra identified for this peptide in spectral counting...
Definition: cv.hpp:5781
MS_static_supply_electrospray
static supply electrospray: The sprayer is loaded with sample once.
Definition: cv.hpp:6087
UNIMOD_Pro__Ser
Pro->Ser: Pro->Ser substitution.
Definition: cv.hpp:9111
MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions
ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching...
Definition: cv.hpp:5505
MS_precursor_activation
precursor activation: Terms to describe the precursor activation.
Definition: cv.hpp:1806
MS_electrospray_inlet
electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization sour...
Definition: cv.hpp:288
MS_PEAKS_Studio
PEAKS Studio: PEAKS Studio software for data analysis.
Definition: cv.hpp:6102
MS_decoy_DB_from_IPI_zebrafish_OBSOLETE
decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rer...
Definition: cv.hpp:4137
MS_flow_rate_array
flow rate array: A data array of flow rate measurements.
Definition: cv.hpp:3006
UNIMOD_Gly__Pro
Gly->Pro: Gly->Pro substitution.
Definition: cv.hpp:10080
MS_SILACAnalyzer
SILACAnalyzer: Software for SILAC workflow.
Definition: cv.hpp:5748
MS_TissueView_Software
TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
Definition: cv.hpp:2508
MS_cross_link_spectrum_identification_item
cross-link spectrum identification item: Cross-linked spectrum identification item.
Definition: cv.hpp:7824
UO_watt_per_square_meter
watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one ...
Definition: cv.hpp:11283
MS_MGF_scans_OBSOLETE
MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute...
Definition: cv.hpp:4482
MS_selected_ion_monitoring_chromatogram
selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements o...
Definition: cv.hpp:4653
MS_6460_Triple_Quadrupole_LC_MS
6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7626
MS_SIM_chromatogram
SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of...
Definition: cv.hpp:4656
MS_ProteinExtractor_UseSequest
ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the Protei...
Definition: cv.hpp:4545
UNIMOD_dHex_1_Hex_3_HexNAc_4_
dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
Definition: cv.hpp:8394
MS_atmospheric_pressure_ionization
atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at ...
Definition: cv.hpp:981
UNIMOD_Phe__Asp
Phe->Asp: Phe->Asp substitution.
Definition: cv.hpp:10026
MS_DB_MW_filter_minimum
DB MW filter minimum: Minimum value of molecular weight filter.
Definition: cv.hpp:3888
MS_glutamyl_endopeptidase
glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6006
MS_spectral_count_feature
spectral count feature: Dummy decribing a spectral count feature.
Definition: cv.hpp:6651
MS_crushed_crystal_MALDI_sample_preparation
crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method...
Definition: cv.hpp:6234
MS_analyzer_scan_offset
analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan...
Definition: cv.hpp:2949
MS_moving_average_smoothing
moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent ...
Definition: cv.hpp:2880
UNIMOD_TMT6plex
TMT6plex: Sixplex Tandem Mass Tag®.
Definition: cv.hpp:9360
MS_PSM_level_probability
PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all...
Definition: cv.hpp:7362
MS_ProteomeDiscoverer_max_number_neutral_loss_modifications
ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifi...
Definition: cv.hpp:7266
UO_pascal
pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 ...
Definition: cv.hpp:11154
UNIMOD_Gln__Trp
Gln->Trp: Gln->Trp substitution.
Definition: cv.hpp:10311
UNIMOD_Pro__His
Pro->His: Pro->His substitution.
Definition: cv.hpp:9117
MS_Synapt_G2_MS
Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
Definition: cv.hpp:5589
MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy
ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be consid...
Definition: cv.hpp:5172
MS_ion_optics_attribute
ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry...
Definition: cv.hpp:1908
MS_combined_FDRScore_OBSOLETE
combined FDRScore: FDRScore values specifically obtained for distinct combinations of single...
Definition: cv.hpp:6663
MS_EIEIO
EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the...
Definition: cv.hpp:1056
MS_MaxQuant_LFQ_intensity
MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
Definition: cv.hpp:5961
MS_MS_OBSOLETE
MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and t...
Definition: cv.hpp:1155
MS_activation
activation (precursor activation): Terms to describe the precursor activation.
Definition: cv.hpp:1809
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5406
MS______EZ_____P_
(?<=[EZ])(?!P): Regular expression for V8-E.
Definition: cv.hpp:4272
MS_PI
PI (photoionization): The ionization of an atom or molecule by a photon, written M + h...
Definition: cv.hpp:1185
MS_protein_accession
protein accession: Accession number for a specific protein in a database.
Definition: cv.hpp:3204
MS_GC_Quantum
GC Quantum: GC Quantum.
Definition: cv.hpp:2130
UNIMOD_DTT_ST_2H_6_
DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines...
Definition: cv.hpp:9402
MS_PSM_level_result_details
PSM-level result details: Peptide spectrum match level information.
Definition: cv.hpp:7326
MS_two_sample_run
two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling)...
Definition: cv.hpp:5712
MS_ProteomeDiscoverer_max_equal_modifications
ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
Definition: cv.hpp:7254
UNIMOD_Pro__Gln
Pro->Gln: Pro->Gln substitution.
Definition: cv.hpp:9120
MS_value_greater_than_zero_but_less_than_or_equal_to_one
value greater than zero but less than or equal to one: Positive value range less than or equal to 1...
Definition: cv.hpp:7338
UNIMOD_Val__Asp
Val->Asp: Val->Asp substitution.
Definition: cv.hpp:9252
MS_MALDI_Solutions_Microbial_Identification
MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:5889
MS_TOPP_MascotAdapterOnline
TOPP MascotAdapterOnline: Identifies MS/MS spectra using the online version of the external program M...
Definition: cv.hpp:6837
MS_protein_group_level_result_details
protein group-level result details: Protein group level information.
Definition: cv.hpp:7329
MS_dalton_OBSOLETE
dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1...
Definition: cv.hpp:861
UNIMOD_Delta_Se_1_
Delta:Se(1): Selenyl.
Definition: cv.hpp:8664
MS_PinPoint
PinPoint: Thermo Scientific PinPoint SRM analysis software.
Definition: cv.hpp:5991
MS_focus_diameter_y
focus diameter y: Describes the diameter of the laser beam in y direction.
Definition: cv.hpp:3078
MS_HyStar
HyStar: Bruker software for hyphenated experiments.
Definition: cv.hpp:2997
MS_TagRecon_mzFidelity
TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5025
MS_TOF
TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration...
Definition: cv.hpp:402
MS_search_type
search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS-MS).
Definition: cv.hpp:3546
MS_reaction
reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z ...
Definition: cv.hpp:3279
UNIMOD_Amidino
Amidino: Amidino.
Definition: cv.hpp:8709
MS_Proteios
Proteios: Database application and analysis platform for proteomics.
Definition: cv.hpp:2307
UNIMOD_DTBP
DTBP: Dimethyl 3,3\'-dithiobispropionimidate.
Definition: cv.hpp:8436
MS_Comet_deltacn
Comet:deltacn: The Comet result 'DeltaCn'.
Definition: cv.hpp:7047
UNIMOD_Met__Gln
Met->Gln: Met->Gln substitution.
Definition: cv.hpp:10203
MS_TRACE_DSQ
TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
Definition: cv.hpp:798
MS_Multiple_Ion_Monitoring
Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the ...
Definition: cv.hpp:825
UO_microgram
microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
Definition: cv.hpp:10893
MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions
ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching...
Definition: cv.hpp:5502
MS_transient_recorder
transient recorder: A detector acquisition mode used for detecting transient signals.
Definition: cv.hpp:537
UNIMOD_Propyl_2H_6_
Propyl:2H(6): Propyl:2H(6).
Definition: cv.hpp:10629
MS_reflectron_off
reflectron off: Reflectron is off.
Definition: cv.hpp:471
UNIMOD_Heme
Heme: Heme.
Definition: cv.hpp:8577
MS_ProteomeDiscoverer_1__Static_Modification
ProteomeDiscoverer:1. Static Modification: Determine 1st static post-translational modifications (PTM...
Definition: cv.hpp:6525
UNIMOD_DyLight_maleimide
DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
Definition: cv.hpp:9549
MS_TOPP_FeatureLinkerUnlabeledQT
TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality thres...
Definition: cv.hpp:6819
MS_ITQ_900
ITQ 900: Thermo Scientific ITQ 900 GC-MS.
Definition: cv.hpp:2427
MS_onium_ion
onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methoni...
Definition: cv.hpp:1536
MS_enium_ion
enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is C...
Definition: cv.hpp:1509
MS_charge_deconvolution
charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that r...
Definition: cv.hpp:204
MS_MRMPilot_Software
MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2514
MS_scan_rate
scan rate: Rate in Th/sec for scanning analyzers.
Definition: cv.hpp:144
UNIMOD_Delta_H_1_N__1_18O_1_
Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
Definition: cv.hpp:8196
UNIMOD_Carbamidomethyl
Carbamidomethyl: Iodoacetamide derivative.
Definition: cv.hpp:7863
UNIMOD_ICAT_D
ICAT-D: Applied Biosystems original ICAT(TM) d0.
Definition: cv.hpp:7890
UO_deciliter
deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
Definition: cv.hpp:11445
UNIMOD_Homocysteic_acid
Homocysteic_acid: Methionine oxidation to homocysteic acid.
Definition: cv.hpp:10767
UNIMOD_Tyr__Met
Tyr->Met: Tyr->Met substitution.
Definition: cv.hpp:10473
UO_millimolar
millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M...
Definition: cv.hpp:11013
MS_ProteinProspector_score
ProteinProspector:score: The ProteinProspector result 'Score'.
Definition: cv.hpp:6420
UNIMOD_Label_15N_2_
Label:15N(2): 15N(2).
Definition: cv.hpp:9765
MS_IPTL_quantitation_analysis
IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide ter...
Definition: cv.hpp:6924
MS_AXIMA_Confidence_MALDI_TOF
AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS...
Definition: cv.hpp:2340
MS_contact_name
contact name: Name of the contact person or organization.
Definition: cv.hpp:2256
MS_mzidLib_Perform_emPAI_on_mzid
mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file...
Definition: cv.hpp:7017
MS_Mascot_matched_ions
Mascot:matched ions: The Mascot result 'Matched ions'.
Definition: cv.hpp:3825
UO_gram_per_mole
gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element o...
Definition: cv.hpp:11088
MS_focus_diameter_x
focus diameter x: Describes the diameter of the laser beam in x direction.
Definition: cv.hpp:3075
MS_Compass_for_HCT_esquire
Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
Definition: cv.hpp:2655
UNIMOD_SecCarbamidomethyl
SecCarbamidomethyl: Sec Iodoacetamide derivative.
Definition: cv.hpp:9801
MS_laser_desorption_ionization
laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser wit...
Definition: cv.hpp:1599
MS_Percolator_features
Percolator:features: List of Percolator features that were used in processing the peptide matches...
Definition: cv.hpp:5535
UNIMOD_Label_2H_4__GlyGly
Label:2H(4)+GlyGly: Ubiquitination 2H4 lysine.
Definition: cv.hpp:9498
MS_ITQ_700
ITQ 700: Thermo Scientific ITQ 700 GC-MS.
Definition: cv.hpp:2424
MS_buffer_gas
buffer gas: An inert gas used for collisional deactivation of internally excited ions.
Definition: cv.hpp:1656
UNIMOD_Gln__Phe
Gln->Phe: Gln->Phe substitution.
Definition: cv.hpp:10290
MS_Synapt_HDMS
Synapt HDMS: Waters oa-ToF based Synapt HDMS.
Definition: cv.hpp:5598
MS_NH3_neutral_loss
NH3 neutral loss: Neutral loss of ammonia.
Definition: cv.hpp:7659
MS_ZCore_probScore
ZCore:probScore: The ZCore probability score.
Definition: cv.hpp:6120
MS_SIM
SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of sever...
Definition: cv.hpp:828
UNIMOD_FMNC
FMNC: S-(4a-FMN).
Definition: cv.hpp:8715
std::string version
the version of the CV from which the referred-to terms are drawn.
Definition: cv.hpp:11693
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5403
UNIMOD_IodoU_AMP
IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.
Definition: cv.hpp:8367
UNIMOD_Ala__Thr
Ala->Thr: Ala->Thr substitution.
Definition: cv.hpp:8889
MS_SEQUEST_Sequences
SEQUEST:Sequences:
Definition: cv.hpp:4365
MS_time_series__time_point_X
time series, time point X: The experimental design followed a time series design. The time point of t...
Definition: cv.hpp:5700
MS_frag__precursor_ion___H2O
frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water...
Definition: cv.hpp:4809
MS_elution_time
elution time: The time of elution from all used chromatographic columns (one or more) in the chromato...
Definition: cv.hpp:3024
MS_multiple_stage_mass_spectrometry_spectrum
multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments...
Definition: cv.hpp:2214
UNIMOD_Pro__Phe
Pro->Phe: Pro->Phe substitution.
Definition: cv.hpp:10257
UNIMOD_Trp__Asn
Trp->Asn: Trp->Asn substitution.
Definition: cv.hpp:10443
MS_API_150EX
API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
Definition: cv.hpp:636
MS_PROTEINEER_fc
PROTEINEER fc: Bruker PROTEINEER fc software.
Definition: cv.hpp:2709
UNIMOD_Cytopiloyne_water
Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
Definition: cv.hpp:8322
MS_MS_GF_DeNovoScore
MS-GF:DeNovoScore: MS-GF de novo score.
Definition: cv.hpp:6441
MS_Bruker_FID_format
Bruker FID format: Bruker FID file format.
Definition: cv.hpp:3021
MS_product_ion_spectrum_OBSOLETE
product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z sep...
Definition: cv.hpp:1446
MS_isotope_ratio_mass_spectrometry_OBSOLETE
isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes o...
Definition: cv.hpp:1119
MS_quality_estimation_by_manual_validation
quality estimation by manual validation: The quality estimation was done manually.
Definition: cv.hpp:3504
MS_SEQUEST_spscore
SEQUEST:spscore: The SEQUEST result 'SpScore'.
Definition: cv.hpp:7032
MS_DELTA_plusAdvantage
DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
Definition: cv.hpp:666
MS_search_engine_specific_score_for_protein_groups
search engine specific score for protein groups: Search engine specific protein group scores...
Definition: cv.hpp:7395
UNIMOD_Phe__Thr
Phe->Thr: Phe->Thr substitution.
Definition: cv.hpp:10056
UNIMOD_Delta_H_6_C_3_O_1_
Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
Definition: cv.hpp:10635
MS_search_engine_specific_score_for_proteins
search engine specific score for proteins: Search engine specific protein scores. ...
Definition: cv.hpp:7380
UO_sievert
sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by ...
Definition: cv.hpp:11232
MS_SEQUEST_SequenceHeaderFilter
SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched...
Definition: cv.hpp:3429
UO_microliters_per_minute
microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a...
Definition: cv.hpp:11631
UNIMOD_AHA_SS
AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
Definition: cv.hpp:10497
UNIMOD_Ala__Cys
Ala->Cys: Ala->Cys substitution.
Definition: cv.hpp:9885
MS_decoy_DB_from_IPI_mouse_OBSOLETE
decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus...
Definition: cv.hpp:4128
MS_Sciex_API_III_format
Sciex API III format: PE Sciex peak list file format.
Definition: cv.hpp:4014
MS_non_classical_ion
non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation...
Definition: cv.hpp:1533
UNIMOD_Biotin_Invitrogen_M1602
Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
Definition: cv.hpp:9810
MS_ProteinLynx_Log_Likelihood
ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
Definition: cv.hpp:4950
UNIMOD_Asn__Gly
Asn->Gly: Asn->Gly substitution.
Definition: cv.hpp:10227
MS_SEQUEST_CullTo
SEQUEST:CullTo: Specify cull string as value of the CVParam.
Definition: cv.hpp:3633
MS_database_IPI_zebrafish
database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
Definition: cv.hpp:4110
MS_unknown_modification
unknown modification: This term should be given if the modification was unknown.
Definition: cv.hpp:4620
UNIMOD_Cytopiloyne
Cytopiloyne: Nucleophilic addtion to cytopiloyne.
Definition: cv.hpp:8319
MS_nanoACQUITY_UPLC
nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
Definition: cv.hpp:5553
MS_einzel_lens
einzel lens: Three element charged particle lens in which the first and third elements are held at th...
Definition: cv.hpp:1329
MS_exact_mass
exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom...
Definition: cv.hpp:876
UNIMOD_Decanoyl
Decanoyl: Lipid.
Definition: cv.hpp:8730
UNIMOD_PEO_Iodoacetyl_LC_Biotin
PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
Definition: cv.hpp:7896
MS_peptide_group_label
peptide group label: An arbitrary string label used to mark a set of peptides that belong together in...
Definition: cv.hpp:3231
UNIMOD_Arg__Lys
Arg->Lys: Arg->Lys substitution.
Definition: cv.hpp:9162
MS_database_original_uri
database original uri: URI, from where the search database was originally downloaded.
Definition: cv.hpp:3390
MS_Byonic_Protein_LogProb
Byonic:Protein LogProb: The log p-value of the protein.
Definition: cv.hpp:7089
MS_TOPP_OpenSwathFeatureXMLToTSV
TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values)...
Definition: cv.hpp:6891
MS_PEAKS_peptideScore
PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
Definition: cv.hpp:6114
MS_conversion_dynode
conversion dynode: A surface that is held at high potential such that ions striking the surface produ...
Definition: cv.hpp:1458
MS_LXQ
LXQ: Finnigan LXQ MS.
Definition: cv.hpp:1782
MS_ProteomeXchange_accession_number
ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
Definition: cv.hpp:6018
MS_precursor_ion_spectrum
precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product...
Definition: cv.hpp:1440
UNIMOD_CLIP_TRAQ_4
CLIP_TRAQ_4: CLIP_TRAQ_4.
Definition: cv.hpp:8877
UO_kilogram
kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the ...
Definition: cv.hpp:10851
MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption io...
Definition: cv.hpp:975
MS_null_terminated_ASCII_string
null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a sing...
Definition: cv.hpp:4683
UNIMOD_Biotin_Thermo_33033
Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
Definition: cv.hpp:10503
MS_ProteomeDiscoverer_perform_deisotoping
ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed...
Definition: cv.hpp:7275
UNIMOD_Oxidation
Oxidation: Oxidation or Hydroxylation.
Definition: cv.hpp:7932
MS_resonance_ion_ejection
resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary ra...
Definition: cv.hpp:1362
MS_mzidLib_Csv2Mzid
mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
Definition: cv.hpp:7008
MS_MapAligner_OBSOLETE
MapAligner: Corrects retention time distortions between maps.
Definition: cv.hpp:2796
MS_autoflex_III_TOF_TOF_smartbeam
autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF...
Definition: cv.hpp:4902
MS_homolytic_cleavage
homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons...
Definition: cv.hpp:1692
MS_sample_plate_type
sample plate type: The sample plate type.
Definition: cv.hpp:6075
MS_MaxQuant_sequence_length
MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
Definition: cv.hpp:5955
MS_isolation_window_upper_offset
isolation window upper offset: The extent of the isolation window in m/z above the isolation window t...
Definition: cv.hpp:3033
UO_kilovolt_hour
kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
Definition: cv.hpp:11508
MS_SEQUEST_LimitTo
SEQUEST:LimitTo: Specify "number of dtas shown" as value of the CVParam.
Definition: cv.hpp:3462
MS_protein_group_level_FDRScore
protein group-level FDRScore: FDRScore for protein groups.
Definition: cv.hpp:7413
MS_lowest_observed_m_z
lowest observed m/z: Lowest m/z value observed in the m/z array.
Definition: cv.hpp:2037
MS_iTRAQ_quantitation_analysis
iTRAQ quantitation analysis: Quantification analysis using the AB SCIEX iTRAQ isobaric labelling work...
Definition: cv.hpp:5766
MS_fragmentation_information
fragmentation information: Fragmentation information like ion types.
Definition: cv.hpp:3936
MS_database_type_nucleotide
database type nucleotide: Database contains nucleic acid sequences.
Definition: cv.hpp:3543
MS_peak_intensity_OBSOLETE
peak intensity: The height or area of a peak in a mass spectrum.
Definition: cv.hpp:942
MS_distinct_peptide_level_combined_FDRScore
distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identificatio...
Definition: cv.hpp:7374
UNIMOD_CLIP_TRAQ_2
CLIP_TRAQ_2: CLIP_TRAQ_2.
Definition: cv.hpp:8844
UNIMOD_MDCC
MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
Definition: cv.hpp:9540
UNIMOD_Asp__Gln
Asp->Gln: Asp->Gln substitution.
Definition: cv.hpp:9972
MS_delta_M
delta M: The difference between a theoretically calculated molecular mass M and the corresponding exp...
Definition: cv.hpp:6195
UNIMOD_Dansyl
Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
Definition: cv.hpp:8124
UO_time_unit
time unit: A unit which is a standard measure of the dimension in which events occur in sequence...
Definition: cv.hpp:10833
MS_SEQUEST_sort_by_P
SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability. ...
Definition: cv.hpp:3483
MS_electrospray_ionization
electrospray ionization: A process in which ionized species in the gas phase are produced from an ana...
Definition: cv.hpp:345
MS_6210_Time_of_Flight_LC_MS
6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:1860
MS_quality_estimation_with_implicite_decoy_sequences
quality estimation with implicite decoy sequences: Decoy entries are generated during the search...
Definition: cv.hpp:4602
UNIMOD_lapachenole
lapachenole: Lapachenole photochemically added to cysteine.
Definition: cv.hpp:9420
UNIMOD_Delta_H_8_C_6_O_2_
Delta:H(8)C(6)O(2): Acrolein addition +112.
Definition: cv.hpp:8262
MS_sequence_same_set_protein
sequence same-set protein: A protein which is indistinguishable or equivalent to another protein...
Definition: cv.hpp:5037
MS_second_OBSOLETE
second: Acquisition time in seconds.
Definition: cv.hpp:219
UNIMOD_Phe__Trp
Phe->Trp: Phe->Trp substitution.
Definition: cv.hpp:10059
MS_suspension
suspension: State if the sample is in suspension form.
Definition: cv.hpp:270
UNIMOD_HexNAc
HexNAc: N-Acetylhexosamine.
Definition: cv.hpp:7953
UNIMOD_AHA_Alkyne
AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
Definition: cv.hpp:9777
MS_error_on_peptide_ratio
error on peptide ratio: Error on peptide ratio.
Definition: cv.hpp:3705
UNIMOD_His__Met
His->Met: His->Met substitution.
Definition: cv.hpp:10110
MS_experimental_condition__case_
experimental condition 'case': The experimental condition is 'case' in contrast to 'control'...
Definition: cv.hpp:5685
MS_cluster_ion
cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with...
Definition: cv.hpp:1494
UO_microliter
microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
Definition: cv.hpp:11127
MS_error_on_protein_ratio
error on protein ratio: Error on protein ratio.
Definition: cv.hpp:3711
MS_negative_ion_mode_OBSOLETE
negative ion mode: OBSOLETE.
Definition: cv.hpp:363
UNIMOD_Bromobimane
Bromobimane: Monobromobimane derivative.
Definition: cv.hpp:8385
MS_DSQ_II
DSQ II: Thermo Scientific DSQ II GC-MS.
Definition: cv.hpp:2442
MS_selected_ion_detection
selected ion detection: Please see Single Ion Monitoring.
Definition: cv.hpp:426
UO_nanomolal
nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m...
Definition: cv.hpp:11037
UO_megavolt
megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V...
Definition: cv.hpp:11574
UNIMOD_Arg__Cys
Arg->Cys: Arg->Cys substitution.
Definition: cv.hpp:9174
MS_smoothing
smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real p...
Definition: cv.hpp:2274
MS_electron_affinity
electron affinity: The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:867
MS_TMT_quantitation_analysis
TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labell...
Definition: cv.hpp:6312
UNIMOD_NEM_2H_5_
NEM:2H(5): D5 N-ethylmaleimide on cysteines.
Definition: cv.hpp:9435
UNIMOD_Label_13C_1_2H_3_
Label:13C(1)2H(3): SILAC.
Definition: cv.hpp:9513
MS_marginally_distinguished_protein
marginally distinguished protein: Assigned to a non-leading protein that has some independent evidenc...
Definition: cv.hpp:7518
MS_MS2_tag_based_feature_level_quantitation
MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
Definition: cv.hpp:6357
MS_REMPI
REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cro...
Definition: cv.hpp:1203
MS_no_peptide_level_threshold
no peptide-level threshold: Indicating that no peptide-level threshold was used.
Definition: cv.hpp:7797
MS_Conventional_ion
Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin a...
Definition: cv.hpp:1497
MS_EMR_radiation_chromatogram
EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnet...
Definition: cv.hpp:2979
MS_retention_time_window_attribute
retention time window attribute: An attribute of a window in time about which a peptide might elute f...
Definition: cv.hpp:3300
MS_OMSSA_xml_format
OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
Definition: cv.hpp:4449
MS_native_spectrum_identifier_format
native spectrum identifier format: Describes how the native spectrum identifiers are formated...
Definition: cv.hpp:2817
MS_TOPP_FeatureFinderMRM
TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
Definition: cv.hpp:6798
MS_ProteomeXchange_accession_number_version_number
ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number...
Definition: cv.hpp:6021
MS_PIA_protein_inference_filter
PIA:protein inference filter: A filter used by PIA for the protein inference.
Definition: cv.hpp:7479
UO_nanogram_per_milliliter
nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided...
Definition: cv.hpp:11643
UNIMOD_Gln__Ala
Gln->Ala: Gln->Ala substitution.
Definition: cv.hpp:10281
MS_blackbody_infrared_radiative_dissociation
blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherei...
Definition: cv.hpp:993
UNIMOD_Val__Tyr
Val->Tyr: Val->Tyr substitution.
Definition: cv.hpp:10419
MS_HCTplus
HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:690
MS_TOPP_PrecursorMassCorrector
TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
Definition: cv.hpp:6768
MS_Spark_Source_Mass_Spectrometry_OBSOLETE
Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
Definition: cv.hpp:1242
MS_inlet_type
inlet type: The nature of the sample inlet.
Definition: cv.hpp:120
MS_DIP
DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrome...
Definition: cv.hpp:1032
MS_Bruker_Daltonics_maXis_series
Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
Definition: cv.hpp:4887
MS_e_2_mass_spectrum
e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric se...
Definition: cv.hpp:1401
UNIMOD_Xle__Tyr
Xle->Tyr: Leu/Ile->Tyr substitution.
Definition: cv.hpp:10140
MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
Definition: cv.hpp:5118
MS_TOPP_IDFileConverter
TOPP IDFileConverter: Converts identification engine file formats.
Definition: cv.hpp:6756
MS_sample_concentration
sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used...
Definition: cv.hpp:117
UNIMOD_Asn__Xle
Asn->Xle: Asn->Leu/Ile substitution.
Definition: cv.hpp:9108
MS_number_of_distinct_protein_sequences
number of distinct protein sequences: The number of protein clusters that have been identified...
Definition: cv.hpp:7515
MS_TRIZAIC_UPLC_nanoTile
TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
Definition: cv.hpp:5562
MS_X_Tandem_xml_format
X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
Definition: cv.hpp:4452
MS_vendor_OBSOLETE
vendor: Name of instrument vendor.
Definition: cv.hpp:192
MS_unspecific_cleavage
unspecific cleavage: Unspecific cleavage.
Definition: cv.hpp:6132
UNIMOD_Myristoleyl
Myristoleyl: (cis-delta 5)-tetradecaenoyl.
Definition: cv.hpp:8112
UNIMOD_Tyr__Asn
Tyr->Asn: Tyr->Asn substitution.
Definition: cv.hpp:9282
UNIMOD_Delta_H_4_C_2_O__1_S_1_
Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
Definition: cv.hpp:8442
MS_ProteinExtractor_UseProteinSolver
ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation o...
Definition: cv.hpp:4557
MS_MultiQuant
MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
Definition: cv.hpp:2538
MS_field_desorption
field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the...
Definition: cv.hpp:1083
UNIMOD_HNE_Delta_H_2_
HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
Definition: cv.hpp:8457
MS_metabolic_labelling__heavy_N__mainly_15N_
metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
Definition: cv.hpp:6495
MS_pressure_array
pressure array: A data array of pressure measurements.
Definition: cv.hpp:3009
MS_open_split
open split: A division of flowing stream of liquid into two streams.
Definition: cv.hpp:312
MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count
ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spe...
Definition: cv.hpp:5082
MS_product_ion_series_ordinal
product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
Definition: cv.hpp:3261
MS_CLINPROT_robot
CLINPROT robot: Bruker CLINPROT robot software.
Definition: cv.hpp:2646
MS_4000_Series_Explorer_Software
4000 Series Explorer Software: AB SCIEX or Applied Biosystems software for data acquisition and analy...
Definition: cv.hpp:2496
UNIMOD_FNEM
FNEM: Fluorescein-5-maleimide.
Definition: cv.hpp:8826
MS_Thermo_Finnigan_instrument_model
Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model...
Definition: cv.hpp:552
UNIMOD_Arg__Pro
Arg->Pro: Arg->Pro substitution.
Definition: cv.hpp:9159
MS_AXIMA_CFR_plus
AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
Definition: cv.hpp:2334
MS_consensus_scoring
consensus scoring: Consensus multiple search engine approach performed.
Definition: cv.hpp:7767
MS_small_molecule_list_attribute
small molecule list attribute: Attribute describing a small molecule list.
Definition: cv.hpp:6639
MS_ProteinExtractor_MascotUseIdentityScore
ProteinExtractor:MascotUseIdentityScore:
Definition: cv.hpp:4539
MS_SEQUEST_selectCV
SEQUEST:selectCV: SEQUEST Select Input Parameters.
Definition: cv.hpp:3690
MS_TSQ_Quantum_Access
TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
Definition: cv.hpp:2451
MS_mass_analyzed_ion_kinetic_energy_spectrometry
mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrome...
Definition: cv.hpp:1146
MS_journal_article_keyword
journal article keyword: Keyword present in a scientific publication.
Definition: cv.hpp:6033
MS_database_sequence_details
database sequence details: Details about a single database sequence.
Definition: cv.hpp:4275
MS_transition_validation_attribute
transition validation attribute: Attributes of the quality of a transition that affect its selection ...
Definition: cv.hpp:5901
UNIMOD_Thr__Lys
Thr->Lys: Thr->Lys substitution.
Definition: cv.hpp:9225
MS_study_variable_attribute
study variable attribute: Attribute describing a study variable.
Definition: cv.hpp:5676
MS_raw_file_attribute
raw file attribute: Attribute describing a raw file.
Definition: cv.hpp:5706
MS_predicted_retention_time
predicted retention time: A time interval from the start of chromatography when an analyte exits a ch...
Definition: cv.hpp:3243
MS_CI
CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:336
UNIMOD_Lys__Ser
Lys->Ser: Lys->Ser substitution.
Definition: cv.hpp:10164
MS_TOF_Total_Path_Length
TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer...
Definition: cv.hpp:165
UNIMOD_MolybdopterinGD
MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
Definition: cv.hpp:8667
MS_param__d_ion
param: d ion: Parameter information, type of product: side chain loss d ion.
Definition: cv.hpp:4047
MS_laser
laser: Device that emits light (electromagnetic radiation) through a process called stimulated emissi...
Definition: cv.hpp:3063
MS_PTM_localization_score
PTM localization score: A score that assign confidence to the localization of an amino acid modificat...
Definition: cv.hpp:6168
MS_TOPP_SpectraFilterNLargest
TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
Definition: cv.hpp:6708
MS_ProteinExtractor_MascotUniqueScore
ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide a...
Definition: cv.hpp:4536
MS_decreasing_m_z_scan
decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers...
Definition: cv.hpp:429
MS_experimental_condition__control_
experimental condition 'control': The experimental condition is 'control' in contrast to 'case'...
Definition: cv.hpp:5688
MS_residual_gas_analyzer
residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in ...
Definition: cv.hpp:1206
MS_taxonomy__scientific_name
taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4644
MS_msmsEval_quality
msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
Definition: cv.hpp:4323
MS_TRITON
TRITON: ThermoFinnigan TRITON MS.
Definition: cv.hpp:801
MS_Mascot_use_MudPIT_scoring_OBSOLETE
Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
Definition: cv.hpp:5256
UO_nmole_disk
nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/con...
Definition: cv.hpp:11652
MS_spectrum_sub_set_protein
spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein...
Definition: cv.hpp:5046
MS_PSM_level_q_value
PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
Definition: cv.hpp:7353
UNIMOD_NHS_fluorescein
NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
Definition: cv.hpp:10785
UNIMOD_NEIAA_2H_5_
NEIAA:2H(5): N-ethyl iodoacetamide-d5.
Definition: cv.hpp:8268
MS_Conversion_to_mzML
Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format...
Definition: cv.hpp:2088
MS_ProteoWizard_msaccess
ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways...
Definition: cv.hpp:6912
MS_fragment_mass_type_average
fragment mass type average: Mass type setting for fragment mass was average isotopic.
Definition: cv.hpp:4038
MS_Microsoft_Excel
Microsoft Excel: Microsoft Excel (can be used for spectral counting).
Definition: cv.hpp:6468
MS_TSQ_7000
TSQ 7000: ThermoFinnigan TSQ 7000 MS.
Definition: cv.hpp:2763
MS_quantification_file_format
quantification file format: File format containing quantification results.
Definition: cv.hpp:6513
MS_command_line_parameters
command-line parameters: Parameters string passed to a command-line interface software application...
Definition: cv.hpp:5910
MS_MaxQuant
MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass sp...
Definition: cv.hpp:4992
MS_magnetic_deflection
magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to ...
Definition: cv.hpp:903
UNIMOD_Deamidated_18O_1_
Deamidated:18O(1): Deamidation in presence of O18.
Definition: cv.hpp:8523
MS______D_______D__
((?<=D))|((?=D)): Regular expression for formic acid.
Definition: cv.hpp:4251
MS_SEQUEST_sort_by_Scan
SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
Definition: cv.hpp:3531
UNIMOD_Glu__Gly
Glu->Gly: Glu->Gly substitution.
Definition: cv.hpp:8958
MS_WARP_LC
WARP-LC: Bruker WARP-LC software.
Definition: cv.hpp:2733
MS_low_intensity_threshold
low intensity threshold: Threshold below which some action is taken.
Definition: cv.hpp:2406
MS_decoy_DB_derived_from_OBSOLETE
decoy DB derived from: The name of the database, the search database was derived from.
Definition: cv.hpp:4101
MS_standard
standard: Something, such as a practice or a product, that is widely recognized or employed...
Definition: cv.hpp:3246
MS_2_iodobenzoate
2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
Definition: cv.hpp:6015
UNIMOD_Asn__Trp
Asn->Trp: Asn->Trp substitution.
Definition: cv.hpp:10245
MS_API_150EX_Prep
API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
Definition: cv.hpp:639
UNIMOD_Galactosyl
Galactosyl: Galactosyl hydroxylysine.
Definition: cv.hpp:9594
MS_FD
FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface i...
Definition: cv.hpp:1086
UNIMOD_Methylmalonylation
Methylmalonylation: Methylmalonylation on Serine.
Definition: cv.hpp:9609
MS_Q_Tof_micro
Q-Tof micro: Waters oa-ToF based Q-Tof micro.
Definition: cv.hpp:771
MS_full_spectrum
full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stag...
Definition: cv.hpp:2199
MS_H3PO4_neutral_loss
H3PO4 neutral loss: Neutral loss of phosphoric acid.
Definition: cv.hpp:7662
MS_photoionization
photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
Definition: cv.hpp:1182
UNIMOD_Glycosyl
Glycosyl: Glycosyl-L-hydroxyproline.
Definition: cv.hpp:8622
UO_count_unit
count unit: A dimensionless unit which denotes a simple count of things.
Definition: cv.hpp:11385
MS_6510_Quadrupole_Time_of_Flight_LC_MS
6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2544
UNIMOD_DiLeu4plex117
DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
Definition: cv.hpp:10659
UNIMOD_Arg__Val
Arg->Val: Arg->Val substitution.
Definition: cv.hpp:10329
MS______KR__
(?<=[KR]): Regular expression for Trypsin/P.
Definition: cv.hpp:4266
UO_absorbed_dose_unit
absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation t...
Definition: cv.hpp:11208
MS_PIA_filter
PIA:filter: A filter used for the report generation.
Definition: cv.hpp:7491
MS_SEQUEST_SelectAdvancedCV
SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
Definition: cv.hpp:3741
MS_Agilent_MassHunter_nativeID_format
Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
Definition: cv.hpp:4770
MS_parent_mass_type_average
parent mass type average: Mass type setting for parent mass was average isotopic. ...
Definition: cv.hpp:3912
MS_SIC_chromatogram
SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of th...
Definition: cv.hpp:2400
MS_MyriMatch_MVH
MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into severa...
Definition: cv.hpp:5010
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr paramete...
Definition: cv.hpp:5376
MS_NoEnzyme_OBSOLETE
NoEnzyme:
Definition: cv.hpp:3579
UNIMOD_Arg__Orn
Arg->Orn: Ornithine from Arginine.
Definition: cv.hpp:8535
MS_LTQ_Velos_ETD
LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
Definition: cv.hpp:3111
UNIMOD_Cysteinyl
Cysteinyl: Cysteinylation.
Definition: cv.hpp:8412
UNIMOD_SPITC_13C_6_
SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
Definition: cv.hpp:8757
UNIMOD_MM_diphenylpentanone
MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
Definition: cv.hpp:10644
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more...
Definition: cv.hpp:5349
MS_LTQ_Orbitrap_Discovery
LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
Definition: cv.hpp:2121
MS_modification_rescoring_false_localization_rate
modification rescoring:false localization rate: Mod position score: false localization rate...
Definition: cv.hpp:7812
MS_peak_picking
peak picking: Spectral peak processing conducted on the acquired data to convert profile data to cent...
Definition: cv.hpp:207
MS_ProteomeDiscoverer_4__Dynamic_Modification
ProteomeDiscoverer:4. Dynamic Modification: Determine 4th dynamic post-translational modifications (P...
Definition: cv.hpp:5424
MS_spectra_data_details
spectra data details: Child-terms contain information to map the results back to spectra.
Definition: cv.hpp:4833
MS_ProteomeDiscoverer_Number_of_input5_spectra
ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
Definition: cv.hpp:5451
MS_solid_state_laser
solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host w...
Definition: cv.hpp:3096
MS_MD5
MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used...
Definition: cv.hpp:2160
MS_intermediate_analysis_format
intermediate analysis format: Type of the source file, the mzIdentML was created from.
Definition: cv.hpp:3456
MS______HKR_P____P_
(?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
Definition: cv.hpp:6138
UNIMOD_QAT
QAT: APTA-d0.
Definition: cv.hpp:8232
MS_low_energy_collision_induced_dissociation
low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precu...
Definition: cv.hpp:1722
UO_force_unit
force unit: A unit which is a standard measure of the force is applied when a mass is accelerated...
Definition: cv.hpp:11145
MS_ProteomeDiscoverer_use_flanking_ions
ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
Definition: cv.hpp:7269
UNIMOD_Biotin_Sigma_B1267
Biotin:Sigma-B1267: Was Biotin-maleimide.
Definition: cv.hpp:9759
MS_pulse_energy
pulse energy: Describes output energy of the laser system. May be attenuated by filters or other mean...
Definition: cv.hpp:3081
UNIMOD_Cation_Li
Cation:Li: Replacement of proton by lithium.
Definition: cv.hpp:9678
UNIMOD_Biotin_Cayman_10013
Biotin:Cayman-10013: Was PGA1-biotin.
Definition: cv.hpp:8883
MS_Chymotrypsin
Chymotrypsin: Enzyme chymotrypsin.
Definition: cv.hpp:4170
UO_century
century: A time unit which is equal to 100 years.
Definition: cv.hpp:11271
MS_AB_SCIEX_TOF_TOF_nativeID_format
AB SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xs...
Definition: cv.hpp:4686
MS_multiple_reaction_monitoring_spectrum
multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2244
UO_cells_per_milliliter
cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 millil...
Definition: cv.hpp:11421
MS_peptide_unique_to_one_protein
peptide unique to one protein: A peptide matching only one.
Definition: cv.hpp:4338
UNIMOD_2_monomethylsuccinyl
2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
Definition: cv.hpp:10509
MS_Phenyx_Turbo_Coverage
Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.
Definition: cv.hpp:4392
UNIMOD_Pyro_carbamidomethyl
Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
Definition: cv.hpp:7911
UNIMOD_HNE_BAHAH
HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
Definition: cv.hpp:9606
UO_light_unit
light unit: A unit which is a standard measure of the intensity of light.
Definition: cv.hpp:11289
UNIMOD_DNPS
DNPS: 2,4-Dinitrobenzenesulfenyl.
Definition: cv.hpp:9654
MS_Q3_spectrum
Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2205
MS_decoy_peptide
decoy peptide: A putative identified peptide issued from a decoy sequence database.
Definition: cv.hpp:6939
MS_ProteomeDiscoverer_Protein_Database_OBSOLETE
ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server)...
Definition: cv.hpp:5238
UNIMOD_Lys__Ala
Lys->Ala: Lys->Ala substitution.
Definition: cv.hpp:10143
MS_SCiLS_Lab_format
SCiLS Lab format: SCiLS Lab file format.
Definition: cv.hpp:7446
UO_katal_per_liter
katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a ca...
Definition: cv.hpp:11430
MS_API_3200
API 3200: AB SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
Definition: cv.hpp:2478
UNIMOD_Hydroxyheme
Hydroxyheme: Hydroxyheme.
Definition: cv.hpp:8697
UNIMOD_NA_LNO2
NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
Definition: cv.hpp:9297
MS_ProteinExtractor_ProteinSolverUniqueScore
ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one pe...
Definition: cv.hpp:4563
MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument
transition validated with an MS/MS spectrum on specified instrument: The transition has been validate...
Definition: cv.hpp:3288
MS_Andi_CHROM_format
Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data...
Definition: cv.hpp:7620
MS_Byonic_Best_LogProb
Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
Definition: cv.hpp:7092
MS_MRMaid_peptide_score
MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM...
Definition: cv.hpp:6951
UNIMOD_EDT_iodoacetyl_PEO_biotin
EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
Definition: cv.hpp:8076
MS_chemical_ionization
chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:333
UO_picoliter
picoliter: A volume unit which is equal to 10^[-12] L.
Definition: cv.hpp:11133
MS_Mascot_SigThreshold
Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be...
Definition: cv.hpp:4200
UNIMOD_Phe__Val
Phe->Val: Phe->Val substitution.
Definition: cv.hpp:8976
UO_colony_forming_unit_per_volume
colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a...
Definition: cv.hpp:11454
MS_orbitrap
orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner ...
Definition: cv.hpp:1899
MS_mass_scan
mass scan: A variation of instrument where a selected mass is scanned.
Definition: cv.hpp:423
MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to b...
Definition: cv.hpp:5232
MS_impact_angle
impact angle: Describes the angle between the laser beam and the sample target.
Definition: cv.hpp:3090
UNIMOD_Tyr__Thr
Tyr->Thr: Tyr->Thr substitution.
Definition: cv.hpp:10485
MS_spectral_count_protein_level_quantitation
spectral count protein level quantitation: Spectral count protein level quantitation.
Definition: cv.hpp:6333
MS_ProteinExtractor_ProteinSolverWeighting
ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of m...
Definition: cv.hpp:4566
UNIMOD_Gln__Arg
Gln->Arg: Gln->Arg substitution.
Definition: cv.hpp:9144
UNIMOD_Piperidine
Piperidine: Piperidination.
Definition: cv.hpp:8835
MS_fragment_ion_OBSOLETE
fragment ion: A product ion that results from the dissociation of a precursor ion.
Definition: cv.hpp:1512
UNIMOD_Ser__Thr
Ser->Thr: Ser->Thr substitution.
Definition: cv.hpp:9192
MS_ProteinScape_PFFSolverExp
ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
Definition: cv.hpp:4755
UO_kilogram_per_cubic_meter
kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divide...
Definition: cv.hpp:11073
MS_double_focusing_mass_spectrometer
double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing a...
Definition: cv.hpp:1275
MS_activation_energy
activation energy: Activation Energy.
Definition: cv.hpp:1980
MS_PD
PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or n...
Definition: cv.hpp:600
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition: cv.hpp:573
UNIMOD_Ala__Asn
Ala->Asn: Ala->Asn substitution.
Definition: cv.hpp:9903
MS_decoy_DB_generation_algorithm
decoy DB generation algorithm: Name of algorithm used for decoy generation.
Definition: cv.hpp:4593
MS_printed_MALDI_matrix_preparation
printed MALDI matrix preparation: Printed MALDI matrix preparation.
Definition: cv.hpp:3054
MS_TOPP_OpenSwath_component
TOPP OpenSwath component: OpenSwath component of the TOPP software.
Definition: cv.hpp:6879
MS_No_variable_modifications_searched
No variable modifications searched: No variable modifications are included as a parameter for the sea...
Definition: cv.hpp:7653
UNIMOD_His__Thr
His->Thr: His->Thr substitution.
Definition: cv.hpp:10116
MS_amaZon_ETD
amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4872
MS_constant_neutral_loss_spectrum
constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a ...
Definition: cv.hpp:1392
MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions
ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for ...
Definition: cv.hpp:5313
MS_PIA_FDRScore_calculated
PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file...
Definition: cv.hpp:7461
MS_4800_Proteomics_Analyzer
4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
Definition: cv.hpp:2493
MS_EVOQ_Qube
EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
Definition: cv.hpp:7185
MS_median_of_spectra
median of spectra: Spectra is combined by calculating the median of the spectra.
Definition: cv.hpp:2175
MS_prolate_traochoidal_mass_spectrometer
prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are sep...
Definition: cv.hpp:1302
MS_Pro_BLAST
Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
Definition: cv.hpp:2529
MS_Scaffold_nativeID_format
Scaffold nativeID format: Scaffold native ID format.
Definition: cv.hpp:4926
UNIMOD_Glu__Ser
Glu->Ser: Glu->Ser substitution.
Definition: cv.hpp:10011
MS_MarkerView_Software
MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling...
Definition: cv.hpp:2511
UO_specific_volume_unit
specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (...
Definition: cv.hpp:11001
MS_MALDI_Synapt_G2_MS
MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition: cv.hpp:5571
MS_autoionization
autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy g...
Definition: cv.hpp:1572
MS_iRT_retention_time_normalization_standard
iRT retention time normalization standard: A de facto standard providing the retention times at which...
Definition: cv.hpp:6288
UO_picovolt
picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12...
Definition: cv.hpp:11571
MS_Element_2
Element 2: Thermo Scientific Element 2 HR-ICP-MS.
Definition: cv.hpp:2457
UO_nanomolar
nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9]...
Definition: cv.hpp:11019
UNIMOD_Pro__Glu
Pro->Glu: Pro->Glu substitution.
Definition: cv.hpp:10254
MS_PeptideAtlas_dataset_URI
PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
Definition: cv.hpp:6381
UNIMOD_Label_13C_4_
Label:13C(4): 13C4 Methionine label.
Definition: cv.hpp:10542
MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps
two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatog...
Definition: cv.hpp:6549
MS_baseline
baseline: An attribute of resolution when recording the detector response in absence of the analyte...
Definition: cv.hpp:405
PWIZ_API_DECL bool cvIsA(CVID child, CVID parent)
returns true iff child IsA parent in the CV
MS_TOPP_software
TOPP software: TOPP (The OpenMS proteomics pipeline) software.
Definition: cv.hpp:2772
MS_MS_GFDB
MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6435
MS_MaxQuant_MS_MS_count
MaxQuant:MS/MS count: The data type MS/MS count produced by MaxQuant.
Definition: cv.hpp:5967
MS_detector_type
detector type: Type of detector used in the mass spectrometer.
Definition: cv.hpp:180
UO_area_unit
area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface...
Definition: cv.hpp:10965
MS_DB_source_NCBI
DB source NCBI: Database source NCBI.
Definition: cv.hpp:4032
MS_HCD
HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs ...
Definition: cv.hpp:1689
MS_DBImporter
DBImporter: Imports data to an OpenMS database.
Definition: cv.hpp:2781
MS_Waters_instrument_model
Waters instrument model: Waters Corporation instrument model.
Definition: cv.hpp:555
MS_distinct_peptide_level_global_confidence
distinct peptide-level global confidence: Estimation of the global confidence for distinct peptides o...
Definition: cv.hpp:7680
MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins
ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein id...
Definition: cv.hpp:5454
MS_LECO_instrument_model
LECO instrument model: LECO instrument model.
Definition: cv.hpp:5655
MS_Quattro_micro_GC
Quattro micro GC: Waters quadrupole based Quattro micro GC.
Definition: cv.hpp:5622
UNIMOD_Lys__Asn
Lys->Asn: Lys->Asn substitution.
Definition: cv.hpp:9030
UNIMOD_Trimethyl
Trimethyl: Tri-Methylation.
Definition: cv.hpp:7938
MS_electron_capture_dissociation
electron capture dissociation: A process in which a multiply protonated molecules interacts with a lo...
Definition: cv.hpp:1041
UNIMOD_Leu__MetOx
Leu->MetOx: Leu->Met substitution and sulfoxidation.
Definition: cv.hpp:9588
UNIMOD_Thr__Tyr
Thr->Tyr: Thr->Tyr substitution.
Definition: cv.hpp:10386
MS_PMT
PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are ...
Definition: cv.hpp:519
MS_pmf_search
pmf search: A peptide mass fingerprint search.
Definition: cv.hpp:3549
UNIMOD_Acetylhypusine
Acetylhypusine: Acetylhypusine.
Definition: cv.hpp:9882
UNIMOD_Xle__Met
Xle->Met: Leu/Ile->Met substitution.
Definition: cv.hpp:9069
MS_apex_Q
apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:633
MS_structural_formula
structural formula: A chemical formula showing the number of atoms of each element in a molecule...
Definition: cv.hpp:3150
MS_HCTultra_ETD_II
HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
Definition: cv.hpp:2616
MS_intermediate_PSM_list_UNDER_DISCUSSION
intermediate PSM list UNDER DISCUSSION: A flag on a list of PSMs (SpectrumIdentificationList) to indi...
Definition: cv.hpp:7611
UO_microliter_per_kilogram
microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogr...
Definition: cv.hpp:11415
UNIMOD_MG_H1
MG-H1: Methylglyoxal-derived hydroimidazolone.
Definition: cv.hpp:9504
MS_TOPP_PepNovoAdapter
TOPP PepNovoAdapter: Identifies MS/MS spectra using the external program PepNovo. ...
Definition: cv.hpp:6843
MS_analyzer
analyzer (mass analyzer): Terms used to describe the Analyzer.
Definition: cv.hpp:1788
MS_inclusive_high_intensity_threshold
inclusive high intensity threshold: Threshold at or above which some action is taken.
Definition: cv.hpp:2898
MS_SEQUEST_sort_by_TIC
SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
Definition: cv.hpp:3528
UNIMOD_CHDH
CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
Definition: cv.hpp:8691
MS_scan_m_z_range__OBSOLETE
scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions. ...
Definition: cv.hpp:1347
MS_QSTAR_Pulsar
QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
Definition: cv.hpp:2487
MS_OBSOLETE_charge_number_OBSOLETE
OBSOLETE charge number: OBSOLETE. The total charge on an ion divided by the electron charge e...
Definition: cv.hpp:855
MS_6110_Quadrupole_LC_MS
6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1848
MS_ProteomeDiscoverer_Lowest_Charge_State
ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out...
Definition: cv.hpp:5178
MS_IT
IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in c...
Definition: cv.hpp:1128
MS_PepsinA
PepsinA: PepsinA proteinase.
Definition: cv.hpp:4185