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OpenMS
Residue
Residue Member List
This is the complete list of members for
Residue
, including all inherited members.
addLossFormula
(const EmpiricalFormula &)
Residue
addLossName
(const String &name)
Residue
addNTermLossFormula
(const EmpiricalFormula &)
Residue
addNTermLossName
(const String &name)
Residue
addResidueSet
(const String &residue_sets)
Residue
addSynonym
(const String &synonym)
Residue
AIon
enum value
Residue
average_weight_
Residue
protected
BIon
enum value
Residue
CIon
enum value
Residue
CIonMinusOne
enum value
Residue
CIonPlusOne
enum value
Residue
CIonPlusTwo
enum value
Residue
CTerminal
enum value
Residue
formula_
Residue
protected
Full
enum value
Residue
gb_bb_l_
Residue
protected
gb_bb_r_
Residue
protected
gb_sc_
Residue
protected
getAIonToFull
()
Residue
inline
static
getAIonToFullAverageWeight
()
Residue
inline
static
getAIonToFullMonoWeight
()
Residue
inline
static
getAverageWeight
(ResidueType res_type=Full) const
Residue
getBackboneBasicityLeft
() const
Residue
getBackboneBasicityRight
() const
Residue
getBIonToFull
()
Residue
inline
static
getBIonToFullAverageWeight
()
Residue
inline
static
getBIonToFullMonoWeight
()
Residue
inline
static
getCIonMinusOneToFull
()
Residue
inline
static
getCIonMinusOneToFullAverageWeight
()
Residue
inline
static
getCIonMinusOneToFullMonoWeight
()
Residue
inline
static
getCIonPlusOneToFull
()
Residue
inline
static
getCIonPlusOneToFullAverageWeight
()
Residue
inline
static
getCIonPlusOneToFullMonoWeight
()
Residue
inline
static
getCIonPlusTwoToFull
()
Residue
inline
static
getCIonPlusTwoToFullAverageWeight
()
Residue
inline
static
getCIonPlusTwoToFullMonoWeight
()
Residue
inline
static
getCIonToFull
()
Residue
inline
static
getCIonToFullAverageWeight
()
Residue
inline
static
getCIonToFullMonoWeight
()
Residue
inline
static
getCTerminalToFull
()
Residue
inline
static
getCTerminalToFullAverageWeight
()
Residue
inline
static
getCTerminalToFullMonoWeight
()
Residue
inline
static
getFormula
(ResidueType res_type=Full) const
Residue
getInternalToFull
()
Residue
inline
static
getInternalToFullAverageWeight
()
Residue
inline
static
getInternalToFullMonoWeight
()
Residue
inline
static
getLossFormulas
() const
Residue
getLossNames
() const
Residue
getLowMassIons
() const
Residue
getModification
() const
Residue
getMonoWeight
(ResidueType res_type=Full) const
Residue
getName
() const
Residue
getNTerminalToFull
()
Residue
inline
static
getNTerminalToFullAverageWeight
()
Residue
inline
static
getNTerminalToFullMonoWeight
()
Residue
inline
static
getNTermLossFormulas
() const
Residue
getNTermLossNames
() const
Residue
getOneLetterCode
() const
Residue
getPiValue
() const
Residue
getPka
() const
Residue
getPkb
() const
Residue
getPkc
() const
Residue
getResidueSets
() const
Residue
getResidueTypeName
(const ResidueType res_type)
Residue
static
getShortName
() const
Residue
getSideChainBasicity
() const
Residue
getSynonyms
() const
Residue
getThreeLetterCode
() const
Residue
getXIonToFull
()
Residue
inline
static
getXIonToFullAverageWeight
()
Residue
inline
static
getXIonToFullMonoWeight
()
Residue
inline
static
getYIonToFull
()
Residue
inline
static
getYIonToFullAverageWeight
()
Residue
inline
static
getYIonToFullMonoWeight
()
Residue
inline
static
getZIonMinusOneToFull
()
Residue
inline
static
getZIonMinusOneToFullAverageWeight
()
Residue
inline
static
getZIonMinusOneToFullMonoWeight
()
Residue
inline
static
getZIonPlusOneToFull
()
Residue
inline
static
getZIonPlusOneToFullAverageWeight
()
Residue
inline
static
getZIonPlusOneToFullMonoWeight
()
Residue
inline
static
getZIonPlusTwoToFull
()
Residue
inline
static
getZIonPlusTwoToFullAverageWeight
()
Residue
inline
static
getZIonPlusTwoToFullMonoWeight
()
Residue
inline
static
getZIonToFull
()
Residue
inline
static
getZIonToFullAverageWeight
()
Residue
inline
static
getZIonToFullMonoWeight
()
Residue
inline
static
hasNeutralLoss
() const
Residue
hasNTermNeutralLosses
() const
Residue
Internal
enum value
Residue
internal_formula_
Residue
protected
is_modified_
Residue
protected
isInResidueSet
(const String &residue_set)
Residue
isModified
() const
Residue
loss_average_weight_
Residue
protected
loss_formulas_
Residue
protected
loss_mono_weight_
Residue
protected
loss_names_
Residue
protected
low_mass_ions_
Residue
protected
modification_
Residue
protected
mono_weight_
Residue
protected
name_
Residue
protected
NTerm_loss_formulas_
Residue
protected
NTerm_loss_names_
Residue
protected
NTerminal
enum value
Residue
one_letter_code_
Residue
protected
operator!=
(const Residue &residue) const
Residue
operator!=
(char one_letter_code) const
Residue
operator<<
(std::ostream &os, const Residue &residue)
Residue
friend
operator=
(const Residue &residue)
Residue
operator==
(const Residue &residue) const
Residue
operator==
(char one_letter_code) const
Residue
pka_
Residue
protected
pkb_
Residue
protected
pkc_
Residue
protected
pre_mod_name_
Residue
protected
Residue
()
Residue
Residue
(const Residue &residue)
Residue
Residue
(const String &name, const String &three_letter_code, const String &one_letter_code, const EmpiricalFormula &formula)
Residue
residue_sets_
Residue
protected
ResidueType
enum name
Residue
setAverageWeight
(double weight)
Residue
setBackboneBasicityLeft
(double gb_bb_l)
Residue
setBackboneBasicityRight
(double gb_bb_r)
Residue
setFormula
(const EmpiricalFormula &formula)
Residue
setLossFormulas
(const std::vector< EmpiricalFormula > &)
Residue
setLossNames
(const std::vector< String > &name)
Residue
setLowMassIons
(const std::vector< EmpiricalFormula > &low_mass_ions)
Residue
setModification
(const String &name)
Residue
setMonoWeight
(double weight)
Residue
setName
(const String &name)
Residue
setNTermLossFormulas
(const std::vector< EmpiricalFormula > &)
Residue
setNTermLossNames
(const std::vector< String > &name)
Residue
setOneLetterCode
(const String &one_letter_code)
Residue
setPka
(double value)
Residue
setPkb
(double value)
Residue
setPkc
(double value)
Residue
setResidueSets
(const std::set< String > &residues_sets)
Residue
setShortName
(const String &short_name)
Residue
setSideChainBasicity
(double gb_sc)
Residue
setSynonyms
(const std::set< String > &synonyms)
Residue
setThreeLetterCode
(const String &three_letter_code)
Residue
short_name_
Residue
protected
SizeOfResidueType
enum value
Residue
synonyms_
Residue
protected
three_letter_code_
Residue
protected
XIon
enum value
Residue
YIon
enum value
Residue
ZIon
enum value
Residue
ZIonMinusOne
enum value
Residue
ZIonPlusOne
enum value
Residue
ZIonPlusTwo
enum value
Residue
~Residue
()
Residue
virtual
OpenMS / TOPP release 2.0.0
Documentation generated on Wed Mar 30 2016 12:49:29 using doxygen 1.8.11