A structure to hold the different scores computed by OpenSWATH. More...
#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h>
Public Member Functions | |
OpenSwath_Scores () | |
double | get_quick_lda_score (double library_corr_, double library_norm_manhattan_, double norm_rt_score_, double xcorr_coelution_score_, double xcorr_shape_score_, double log_sn_score_) |
double | calculate_lda_prescore (OpenSwath_Scores scores) |
double | calculate_swath_lda_prescore (OpenSwath_Scores scores) |
A structure to hold the different scores computed by OpenSWATH.
This struct is used to store the individual OpenSWATH (sub-)scores. It also allows to compute some preliminary quality score for a feature by using a predefined combination of the individual scores determined using LDA.
|
inline |
|
inline |
|
inline |
References OpenSwath_Scores::isotope_correlation, OpenSwath_Scores::isotope_overlap, OpenSwath_Scores::library_corr, OpenSwath_Scores::library_norm_manhattan, OpenSwath_Scores::log_sn_score, OpenSwath_Scores::massdev_score, OpenSwath_Scores::norm_rt_score, OpenSwath_Scores::xcorr_coelution_score, OpenSwath_Scores::xcorr_shape_score, and OpenSwath_Scores::yseries_score.
|
inline |
double bseries_score |
double dotprod_score_dia |
double elution_model_fit_score |
Referenced by OpenSwath_Scores::calculate_lda_prescore().
double intensity |
double isotope_correlation |
Referenced by OpenSwath_Scores::calculate_swath_lda_prescore().
double isotope_overlap |
Referenced by OpenSwath_Scores::calculate_swath_lda_prescore().
double library_corr |
double library_dotprod |
double library_manhattan |
double library_norm_manhattan |
double library_rootmeansquare |
double library_sangle |
double log_sn_score |
double manhatt_score_dia |
double massdev_score |
Referenced by OpenSwath_Scores::calculate_swath_lda_prescore().
double ms1_isotope_correlation |
double ms1_isotope_overlap |
double ms1_ppm_score |
double norm_rt_score |
double normalized_experimental_rt |
double nr_peaks |
double raw_rt_score |
double rt_difference |
double sn_ratio |
double total_xic |
double weighted_coelution_score |
double weighted_massdev_score |
double weighted_xcorr_shape |
double xcorr_coelution_score |
double xcorr_ms1_coelution_score |
double xcorr_ms1_shape_score |
double xcorr_shape_score |
double yseries_score |
Referenced by OpenSwath_Scores::calculate_swath_lda_prescore().
OpenMS / TOPP release 2.0.0 | Documentation generated on Wed Mar 30 2016 12:49:29 using doxygen 1.8.11 |