35 #ifndef OPENMS_VISUAL_METADATABROWSER_H 36 #define OPENMS_VISUAL_METADATABROWSER_H 39 #include <OpenMS/VISUAL/OpenMS_GUIConfig.h> 46 #include <QtGui/QDialog> 47 #include <QtGui/QTreeWidget> 48 class QTreeWidgetItem;
57 class BaseVisualizerGUI;
59 class AcquisitionInfo;
62 class ExperimentalSettings;
65 class PeptideIdentification;
71 class MetaInfoDescription;
72 class MetaInfoInterface;
73 class MetaInfoRegistry;
79 class ProteinIdentification;
81 class SampleTreatment;
84 class SpectrumSettings;
86 class DocumentIdentifier;
115 template <
class PeakType>
118 add(static_cast<ExperimentalSettings &>(exp));
119 treeview_->expandItem(treeview_->findItems(QString::number(0), Qt::MatchExactly, 1).first());
123 template <
class PeakType>
127 add(static_cast<SpectrumSettings &>(spectrum));
143 add(static_cast<MetaInfoInterface &>(spectrum));
145 treeview_->expandItem(treeview_->findItems(QString::number(0), Qt::MatchExactly, 1).first());
152 add(static_cast<DocumentIdentifier &>(map));
166 treeview_->expandItem(treeview_->findItems(QString::number(0), Qt::MatchExactly, 1).first());
182 template <
class MetaDataType>
183 void add(MetaDataType & meta_data_object)
185 visualize_(meta_data_object);
186 treeview_->expandItem(treeview_->findItems(QString::number(0), Qt::MatchExactly, 1).first());
199 void setStatus(std::string status);
216 void visualize_(
Sample & meta, QTreeWidgetItem * parent = 0);
217 void visualize_(
HPLC & meta, QTreeWidgetItem * parent = 0);
218 void visualize_(
Digestion & meta, QTreeWidgetItem * parent = 0);
219 void visualize_(
Modification & meta, QTreeWidgetItem * parent = 0);
220 void visualize_(
Tagging & meta, QTreeWidgetItem * parent = 0);
221 void visualize_(
Gradient & meta, QTreeWidgetItem * parent = 0);
222 void visualize_(
Software & meta, QTreeWidgetItem * parent = 0);
223 void visualize_(
ScanWindow & meta, QTreeWidgetItem * parent = 0);
224 void visualize_(
SourceFile & meta, QTreeWidgetItem * parent = 0);
225 void visualize_(
ContactPerson & meta, QTreeWidgetItem * parent = 0);
226 void visualize_(
Instrument & meta, QTreeWidgetItem * parent = 0);
227 void visualize_(
IonSource & meta, QTreeWidgetItem * parent = 0);
228 void visualize_(
IonDetector & meta, QTreeWidgetItem * parent = 0);
229 void visualize_(
MassAnalyzer & meta, QTreeWidgetItem * parent = 0);
230 void visualize_(
DataProcessing & meta, QTreeWidgetItem * parent = 0);
232 void visualize_(
ProteinHit & meta, QTreeWidgetItem * parent = 0);
233 void visualize_(
PeptideHit & meta, QTreeWidgetItem * parent = 0);
234 void visualize_(
Acquisition & meta, QTreeWidgetItem * parent = 0);
237 void visualize_(
Precursor & meta, QTreeWidgetItem * parent = 0);
238 void visualize_(
Product & meta, QTreeWidgetItem * parent = 0);
245 template <
typename ContainerType>
248 for (
typename ContainerType::iterator it = container.begin(); it != container.end(); ++it)
250 visualize_(*it, parent);
258 void filterHits_(
double threshold,
bool higher_better,
int tree_item_id);
260 void showAllHits_(
int tree_item_id);
Representation of a protein identification run.
Definition: ProteinIdentification.h:61
Description of the applied preprocessing steps.
Definition: DataProcessing.h:51
Description of a MS instrument.
Definition: Instrument.h:64
Description of the settings a MS Instrument was run with.
Definition: InstrumentSettings.h:48
Precursor meta information.
Definition: Precursor.h:56
const std::vector< ProteinIdentification > & getProteinIdentifications() const
non-mutable access to the protein identifications
Product meta information.
Definition: Product.h:49
Description of the combination of raw data to a single spectrum.
Definition: AcquisitionInfo.h:53
A container for features.
Definition: FeatureMap.h:93
const std::vector< PeptideIdentification > & getUnassignedPeptideIdentifications() const
non-mutable access to the unassigned peptide identifications
Representation of a HPLC experiment.
Definition: HPLC.h:51
A container for consensus elements.
Definition: ConsensusMap.h:72
Representation of 1D spectrum settings.
Definition: SpectrumSettings.h:64
Description of a file location, used to store the origin of (meta) data.
Definition: SourceFile.h:47
A base class for all visualizer classes.
Definition: BaseVisualizerGUI.h:65
Description of the software used for processing.
Definition: Software.h:49
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
const IntegerDataArrays & getIntegerDataArrays() const
Returns a const reference to the integer meta data arrays.
Definition: MSSpectrum.h:322
Class that displays all meta information for ProteinIdentification objects.
Definition: ProteinIdentificationVisualizer.h:55
Representation of a HPLC gradient.
Definition: Gradient.h:53
Representation of a peptide hit.
Definition: PeptideHit.h:55
Scan window description.
Definition: ScanWindow.h:47
Meta information about the sample.
Definition: Sample.h:60
Meta information about digestion of a sample.
Definition: Digestion.h:50
Description of a ion detector (part of a MS Instrument)
Definition: IonDetector.h:47
Information about one raw data spectrum that was combined with several other raw data spectra...
Definition: Acquisition.h:50
Class that displays all meta information for PeptideIdentification objects.
Definition: PeptideIdentificationVisualizer.h:55
An LC-MS feature.
Definition: Feature.h:70
Representation of a protein hit.
Definition: ProteinHit.h:54
In-Memory representation of a mass spectrometry experiment.
Definition: MSExperiment.h:69
Meta information about tagging of a sample e.g. ICAT labeling.
Definition: Tagging.h:50
Meta information about chemical modification of a sample.
Definition: Modification.h:52
const StringDataArrays & getStringDataArrays() const
Returns a const reference to the string meta data arrays.
Definition: MSSpectrum.h:310
const FloatDataArrays & getFloatDataArrays() const
Returns a const reference to the float meta data arrays.
Definition: MSSpectrum.h:298
Description of a mass analyzer (part of a MS Instrument)
Definition: MassAnalyzer.h:48
Description of an ion source (part of a MS Instrument)
Definition: IonSource.h:47
Description of the experimental settings.
Definition: ExperimentalSettings.h:59
Manage source document information.
Definition: DocumentIdentifier.h:56
A 2-dimensional consensus feature.
Definition: ConsensusFeature.h:65
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:63