36 #ifndef OPENMS_ANALYSIS_DENOVO_COMPNOVOIDENTIFICATION_H 37 #define OPENMS_ANALYSIS_DENOVO_COMPNOVOIDENTIFICATION_H 79 void getIdentifications(std::vector<PeptideIdentification> & ids,
const PeakMap & exp);
97 void reducePermuts_(std::set<String> & permuts,
const PeakSpectrum & CID_orig_spec,
const PeakSpectrum & ETD_orig_spec,
double prefix,
double suffix);
100 void getETDSpectrum_(
PeakSpectrum & spec,
const String &sequence,
Size ,
double prefix = 0.0,
double suffix = 0.0);
103 double estimatePrecursorWeight_(
const PeakSpectrum & ETD_spec,
Size & charge);
A more convenient string class.
Definition: String.h:57
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
CompNovoIdentificationBase::Permut Permut
Definition: CompNovoIdentification.h:89
CompNovoIonScoringBase::IsotopeType IsotopeType
Definition: CompNovoIdentification.h:87
run with CompNovoIdentificationBase
Definition: CompNovoIdentificationBase.h:58
IsotopeType
Definition: CompNovoIonScoringBase.h:59
CompNovoIonScoringBase::IonScore IonScore
Definition: CompNovoIdentification.h:88
run with CompNovoIdentification
Definition: CompNovoIdentification.h:54
Simple class to store permutations and a score.
Definition: CompNovoIdentificationBase.h:186
Definition: CompNovoIonScoringBase.h:66
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:51
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:63