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QCCalculator

Calculates basic quality parameters from MS experiments and compiles data for subsequent QC into a qcML file.

pot. predecessor tools $ \longrightarrow $ QCCalculator $ \longrightarrow $ pot. successor tools
FeatureFinderCentroided QCMerger
XTandemAdapter QCExporter

The calculated quality parameters or data compiled as attachments for easy plotting input include file origin, spectra distribution, aquisition details, ion current stability ( & TIC ), id accuracy statistics and feature statistics. The MS experiments base name is used as name to the qcML element that is comprising all quality parameter values for the given run (including the given downstream analysis data).

Output is in qcML format (see parameter out) which can be viewed directly in a modern browser (chromium, firefox, safari).

Note
For mzid in-/out- put, due to legacy reason issues you are temporarily asked to use IDFileConverter as a wrapper. The command line parameters of this tool are:
 INI file documentation of this tool:  

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:26 using doxygen 1.8.11