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XTandemInfile Member List

This is the complete list of members for XTandemInfile, including all inherited members.

allow_isotope_error_XTandemInfileprotected
AVERAGE enum valueXTandemInfile
batch_size_XTandemInfileprotected
cleavage_site_XTandemInfileprotected
convertModificationSet_(const std::set< ModificationDefinition > &mods) const XTandemInfileprotected
DALTONS enum valueXTandemInfile
default_parameters_file_XTandemInfileprotected
enforced_encoding_XMLFileprotected
enforceEncoding_(const String &encoding)XMLFileprotected
ErrorUnit enum nameXTandemInfile
fragment_lower_mz_XTandemInfileprotected
fragment_mass_error_unit_XTandemInfileprotected
fragment_mass_tolerance_XTandemInfileprotected
fragment_mass_type_XTandemInfileprotected
getCleavageSite() const XTandemInfile
getDefaultParametersFilename() const XTandemInfile
getFragmentMassErrorUnit() const XTandemInfile
getFragmentMassTolerance() const XTandemInfile
getInputFilename() const XTandemInfile
getMaxPrecursorCharge() const XTandemInfile
getMaxValidEValue() const XTandemInfile
getModifications() const XTandemInfile
getNumberOfMissedCleavages() const XTandemInfile
getNumberOfThreads() const XTandemInfile
getOutputFilename() const XTandemInfile
getOutputResults() const XTandemInfile
getPrecursorErrorType() const XTandemInfile
getPrecursorMassErrorUnit() const XTandemInfile
getPrecursorMassToleranceMinus() const XTandemInfile
getPrecursorMassTolerancePlus() const XTandemInfile
getTaxon() const XTandemInfile
getTaxonomyFilename() const XTandemInfile
getVersion() const XMLFile
input_filename_XTandemInfileprotected
isRefining() const XTandemInfile
isValid(const String &filename, std::ostream &os)XMLFile
load(const String &filename)XTandemInfile
MassType enum nameXTandemInfile
max_precursor_charge_XTandemInfileprotected
max_valid_evalue_XTandemInfileprotected
modifications_XTandemInfileprotected
MONOISOTOPIC enum valueXTandemInfile
notes_XTandemInfileprotected
number_of_missed_cleavages_XTandemInfileprotected
number_of_threads_XTandemInfileprotected
operator=(const XTandemInfile &rhs)XTandemInfileprotected
output_filename_XTandemInfileprotected
output_results_XTandemInfileprotected
parse_(const String &filename, XMLHandler *handler)XMLFileprotected
PPM enum valueXTandemInfile
precursor_lower_mz_XTandemInfileprotected
precursor_mass_error_unit_XTandemInfileprotected
precursor_mass_tolerance_minus_XTandemInfileprotected
precursor_mass_tolerance_plus_XTandemInfileprotected
precursor_mass_type_XTandemInfileprotected
refine_XTandemInfileprotected
refine_max_valid_evalue_XTandemInfileprotected
save_(const String &filename, XMLHandler *handler) const XMLFileprotected
schema_location_XMLFileprotected
schema_version_XMLFileprotected
semi_cleavage_XTandemInfileprotected
setAllowIsotopeError(const bool allow_isotope_error)XTandemInfile
setCleavageSite(const String &cleavage_site)XTandemInfile
setDefaultParametersFilename(const String &filename)XTandemInfile
setFragmentMassErrorUnit(ErrorUnit unit)XTandemInfile
setFragmentMassTolerance(double tolerance)XTandemInfile
setInputFilename(const String &input_file)XTandemInfile
setMaxPrecursorCharge(Int max_charge)XTandemInfile
setMaxValidEValue(double value)XTandemInfile
setModifications(const ModificationDefinitionsSet &mods)XTandemInfile
setNumberOfMissedCleavages(UInt missed_cleavages)XTandemInfile
setNumberOfThreads(UInt threads)XTandemInfile
setOutputFilename(const String &output)XTandemInfile
setOutputResults(String result)XTandemInfile
setPrecursorErrorType(MassType mono_isotopic)XTandemInfile
setPrecursorMassErrorUnit(ErrorUnit unit)XTandemInfile
setPrecursorMassToleranceMinus(double tol)XTandemInfile
setPrecursorMassTolerancePlus(double tol)XTandemInfile
setRefine(const bool refine)XTandemInfile
setSemiCleavage(const bool semi_cleavage)XTandemInfile
setTaxon(const String &taxon)XTandemInfile
setTaxonomyFilename(const String &filename)XTandemInfile
taxon_XTandemInfileprotected
taxonomy_file_XTandemInfileprotected
write(const String &filename)XTandemInfile
writeNote_(std::ostream &os, const String &type, const String &label, const String &value)XTandemInfileprotected
writeNote_(std::ostream &os, const String &type, const String &label, const char *value)XTandemInfileprotected
writeNote_(std::ostream &os, const String &type, const String &label, bool value)XTandemInfileprotected
writeTo_(std::ostream &os)XTandemInfileprotected
XMLFile()XMLFile
XMLFile(const String &schema_location, const String &version)XMLFile
XTandemInfile()XTandemInfile
XTandemInfile(const XTandemInfile &rhs)XTandemInfileprotected
~XMLFile()XMLFilevirtual
~XTandemInfile()XTandemInfilevirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:30 using doxygen 1.8.11