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MSExperiment< PeakT, ChromatogramPeakT > Member List

This is the complete list of members for MSExperiment< PeakT, ChromatogramPeakT >, including all inherited members.

addChromatogram(const MSChromatogram< ChromatogramPeakType > &chromatogram)MSExperiment< PeakT, ChromatogramPeakT >inline
addSpectrum(const MSSpectrum< PeakT > &spectrum)MSExperiment< PeakT, ChromatogramPeakT >inline
areaBegin(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz)MSExperiment< PeakT, ChromatogramPeakT >inline
areaBeginConst(CoordinateType min_rt, CoordinateType max_rt, CoordinateType min_mz, CoordinateType max_mz) const MSExperiment< PeakT, ChromatogramPeakT >inline
areaEnd()MSExperiment< PeakT, ChromatogramPeakT >inline
areaEndConst() const MSExperiment< PeakT, ChromatogramPeakT >inline
AreaIterator typedefMSExperiment< PeakT, ChromatogramPeakT >
AreaType typedefMSExperiment< PeakT, ChromatogramPeakT >
Base typedefMSExperiment< PeakT, ChromatogramPeakT >
begin()MSExperiment< PeakT, ChromatogramPeakT >inline
begin() const MSExperiment< PeakT, ChromatogramPeakT >inline
ChromatogramPeakType typedefMSExperiment< PeakT, ChromatogramPeakT >
chromatograms_MSExperiment< PeakT, ChromatogramPeakT >protected
ChromatogramType typedefMSExperiment< PeakT, ChromatogramPeakT >
clear(bool clear_meta_data)MSExperiment< PeakT, ChromatogramPeakT >inline
clearMetaDataArrays()MSExperiment< PeakT, ChromatogramPeakT >inline
clearMetaInfo()MetaInfoInterface
clearRanges()RangeManager< 2 >inline
comment_ExperimentalSettingsprotected
const_iterator typedefMSExperiment< PeakT, ChromatogramPeakT >
ConstAreaIterator typedefMSExperiment< PeakT, ChromatogramPeakT >
ConstIterator typedefMSExperiment< PeakT, ChromatogramPeakT >
contacts_ExperimentalSettingsprotected
CoordinateType typedefMSExperiment< PeakT, ChromatogramPeakT >
createIfNotExists_()MetaInfoInterfaceinlineprotected
datetime_ExperimentalSettingsprotected
DIMENSION enum valueRangeManager< 2 >
DocumentIdentifier()DocumentIdentifier
DocumentIdentifier(const DocumentIdentifier &source)DocumentIdentifier
empty() const MSExperiment< PeakT, ChromatogramPeakT >inline
end()MSExperiment< PeakT, ChromatogramPeakT >inline
end() const MSExperiment< PeakT, ChromatogramPeakT >inline
ExperimentalSettings()ExperimentalSettings
ExperimentalSettings(const ExperimentalSettings &source)ExperimentalSettings
file_path_DocumentIdentifierprotected
file_type_DocumentIdentifierprotected
fraction_identifier_ExperimentalSettingsprotected
get2DData(Container &cont) const MSExperiment< PeakT, ChromatogramPeakT >inline
getChromatogram(Size id)MSExperiment< PeakT, ChromatogramPeakT >inline
getChromatograms() const MSExperiment< PeakT, ChromatogramPeakT >inline
getComment() const ExperimentalSettings
getContacts() const ExperimentalSettings
getContacts()ExperimentalSettings
getDataRange() const MSExperiment< PeakT, ChromatogramPeakT >inline
getDateTime() const ExperimentalSettings
getExperimentalSettings() const MSExperiment< PeakT, ChromatogramPeakT >inline
getExperimentalSettings()MSExperiment< PeakT, ChromatogramPeakT >inline
getFractionIdentifier() const ExperimentalSettings
getHPLC() const ExperimentalSettings
getHPLC()ExperimentalSettings
getIdentifier() const DocumentIdentifier
getInstrument() const ExperimentalSettings
getInstrument()ExperimentalSettings
getKeys(std::vector< String > &keys) const MetaInfoInterface
getKeys(std::vector< UInt > &keys) const MetaInfoInterface
getLoadedFilePath() const DocumentIdentifier
getLoadedFileType() const DocumentIdentifier
getMax() constRangeManager< 2 >inline
getMaxInt() constRangeManager< 2 >inline
getMaxMZ() const MSExperiment< PeakT, ChromatogramPeakT >inline
getMaxRT() const MSExperiment< PeakT, ChromatogramPeakT >inline
getMetaValue(const String &name) const MetaInfoInterface
getMetaValue(UInt index) const MetaInfoInterface
getMin() constRangeManager< 2 >inline
getMinInt() constRangeManager< 2 >inline
getMinMZ() const MSExperiment< PeakT, ChromatogramPeakT >inline
getMinRT() const MSExperiment< PeakT, ChromatogramPeakT >inline
getMSLevels() const MSExperiment< PeakT, ChromatogramPeakT >inline
getNrChromatograms() const MSExperiment< PeakT, ChromatogramPeakT >inline
getNrSpectra() const MSExperiment< PeakT, ChromatogramPeakT >inline
getPrecursorSpectrum(ConstIterator iterator) const MSExperiment< PeakT, ChromatogramPeakT >inline
getProteinIdentifications() const ExperimentalSettings
getProteinIdentifications()ExperimentalSettings
getSample() const ExperimentalSettings
getSample()ExperimentalSettings
getSize() const MSExperiment< PeakT, ChromatogramPeakT >inline
getSourceFiles() const ExperimentalSettings
getSourceFiles()ExperimentalSettings
getSpectra() const MSExperiment< PeakT, ChromatogramPeakT >inline
getSpectra()MSExperiment< PeakT, ChromatogramPeakT >inline
getSpectrum(Size id)MSExperiment< PeakT, ChromatogramPeakT >inline
getTIC() const MSExperiment< PeakT, ChromatogramPeakT >inline
hplc_ExperimentalSettingsprotected
id_DocumentIdentifierprotected
instrument_ExperimentalSettingsprotected
int_range_RangeManager< 2 >protected
IntensityRangeType typedefRangeManager< 2 >
IntensityType typedefMSExperiment< PeakT, ChromatogramPeakT >
isMetaEmpty() const MetaInfoInterface
isSorted(bool check_mz=true) const MSExperiment< PeakT, ChromatogramPeakT >inline
Iterator typedefMSExperiment< PeakT, ChromatogramPeakT >
iterator typedefMSExperiment< PeakT, ChromatogramPeakT >
meta_MetaInfoInterfaceprotected
MetaInfoInterface()MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)MetaInfoInterface
metaRegistry()MetaInfoInterfacestatic
metaValueExists(const String &name) const MetaInfoInterface
metaValueExists(UInt index) const MetaInfoInterface
ms_levels_MSExperiment< PeakT, ChromatogramPeakT >protected
MSExperiment()MSExperiment< PeakT, ChromatogramPeakT >inline
MSExperiment(const MSExperiment &source)MSExperiment< PeakT, ChromatogramPeakT >inline
operator!=(const MSExperiment &rhs) const MSExperiment< PeakT, ChromatogramPeakT >inline
RangeManager< 2 >::operator!=(const RangeManager &rhs) constRangeManager< 2 >inline
OpenMS::ExperimentalSettings::operator!=(const ExperimentalSettings &rhs) const ExperimentalSettings
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const MetaInfoInterface
operator=(const MSExperiment &source)MSExperiment< PeakT, ChromatogramPeakT >inline
operator=(const ExperimentalSettings &source)MSExperiment< PeakT, ChromatogramPeakT >inline
RangeManager< 2 >::operator=(const RangeManager &rhs)RangeManager< 2 >inline
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)MetaInfoInterface
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &source)DocumentIdentifier
operator==(const MSExperiment &rhs) const MSExperiment< PeakT, ChromatogramPeakT >inline
RangeManager< 2 >::operator==(const RangeManager &rhs) constRangeManager< 2 >inline
OpenMS::ExperimentalSettings::operator==(const ExperimentalSettings &rhs) const ExperimentalSettings
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const MetaInfoInterface
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) const DocumentIdentifier
operator[](Size n)MSExperiment< PeakT, ChromatogramPeakT >inline
operator[](Size n) const MSExperiment< PeakT, ChromatogramPeakT >inline
PeakType typedefMSExperiment< PeakT, ChromatogramPeakT >
pos_range_RangeManager< 2 >protected
PositionRangeType typedefRangeManager< 2 >
PositionType typedefRangeManager< 2 >
protein_identifications_ExperimentalSettingsprotected
RangeManager()RangeManager< 2 >inline
RangeManager(const RangeManager &rhs)RangeManager< 2 >inline
RangeManagerType typedefMSExperiment< PeakT, ChromatogramPeakT >
removeMetaValue(const String &name)MetaInfoInterface
removeMetaValue(UInt index)MetaInfoInterface
reserve(Size s)MSExperiment< PeakT, ChromatogramPeakT >inline
reserveSpaceChromatograms(Size s)MSExperiment< PeakT, ChromatogramPeakT >inline
reserveSpaceSpectra(Size s)MSExperiment< PeakT, ChromatogramPeakT >inline
reset()MSExperiment< PeakT, ChromatogramPeakT >inline
resize(Size s)MSExperiment< PeakT, ChromatogramPeakT >inline
RTBegin(CoordinateType rt) const MSExperiment< PeakT, ChromatogramPeakT >inline
RTBegin(CoordinateType rt)MSExperiment< PeakT, ChromatogramPeakT >inline
RTEnd(CoordinateType rt) const MSExperiment< PeakT, ChromatogramPeakT >inline
RTEnd(CoordinateType rt)MSExperiment< PeakT, ChromatogramPeakT >inline
sample_ExperimentalSettingsprotected
set2DData(const Container &container)MSExperiment< PeakT, ChromatogramPeakT >inline
set2DData(const Container &container)MSExperiment< PeakT, ChromatogramPeakT >inline
setChromatograms(const std::vector< MSChromatogram< ChromatogramPeakType > > &chromatograms)MSExperiment< PeakT, ChromatogramPeakT >inline
setComment(const String &comment)ExperimentalSettings
setContacts(const std::vector< ContactPerson > &contacts)ExperimentalSettings
setDateTime(const DateTime &date)ExperimentalSettings
setFractionIdentifier(const String &fraction_identifier)ExperimentalSettings
setHPLC(const HPLC &hplc)ExperimentalSettings
setIdentifier(const String &id)DocumentIdentifier
setInstrument(const Instrument &instrument)ExperimentalSettings
setLoadedFilePath(const String &file_name)DocumentIdentifier
setLoadedFileType(const String &file_name)DocumentIdentifier
setMetaValue(const String &name, const DataValue &value)MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)MetaInfoInterface
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)ExperimentalSettings
setSample(const Sample &sample)ExperimentalSettings
setSourceFiles(const std::vector< SourceFile > &source_files)ExperimentalSettings
setSpectra(const std::vector< MSSpectrum< PeakT > > &spectra)MSExperiment< PeakT, ChromatogramPeakT >inline
size() const MSExperiment< PeakT, ChromatogramPeakT >inline
sortChromatograms(bool sort_rt=true)MSExperiment< PeakT, ChromatogramPeakT >inline
sortSpectra(bool sort_mz=true)MSExperiment< PeakT, ChromatogramPeakT >inline
source_files_ExperimentalSettingsprotected
spectra_MSExperiment< PeakT, ChromatogramPeakT >protected
SpectrumType typedefMSExperiment< PeakT, ChromatogramPeakT >
swap(MSExperiment &from)MSExperiment< PeakT, ChromatogramPeakT >inline
OpenMS::ExperimentalSettings::swap(DocumentIdentifier &from)DocumentIdentifier
total_size_MSExperiment< PeakT, ChromatogramPeakT >protected
updateRanges()MSExperiment< PeakT, ChromatogramPeakT >inlinevirtual
updateRanges(Int ms_level)MSExperiment< PeakT, ChromatogramPeakT >inline
updateRanges_(const PeakIteratorType &begin, const PeakIteratorType &end)RangeManager< 2 >inlineprotected
value_type typedefMSExperiment< PeakT, ChromatogramPeakT >
~DocumentIdentifier()DocumentIdentifiervirtual
~ExperimentalSettings()ExperimentalSettings
~MetaInfoInterface()MetaInfoInterface
~RangeManager()RangeManager< 2 >inlinevirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:29 using doxygen 1.8.11