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MRMAssay Member List

This is the complete list of members for MRMAssay, including all inherited members.

addModification_(std::vector< TargetedExperiment::Peptide::Modification > &mods, int location, ResidueModification &rmod, const String &name)MRMAssayprotected
addModificationsSequences_(std::vector< OpenMS::AASequence > sequences, std::vector< std::vector< size_t > > mods_combs, OpenMS::String modification)MRMAssayprotected
CMD enum valueProgressLogger
combineModifications_(OpenMS::AASequence sequence)MRMAssayprotected
current_logger_ProgressLoggermutableprotected
detectingTransitions(OpenMS::TargetedExperiment &exp, int min_transitions, int max_transitions)MRMAssay
endProgress() const ProgressLogger
getLogType() const ProgressLogger
getSwath_(const std::vector< std::pair< double, double > > swathes, const double precursor_mz)MRMAssayprotected
GUI enum valueProgressLogger
insilicoTransitions(OpenMS::TargetedExperiment &exp, std::vector< String > fragment_types, std::vector< size_t > fragment_charges, bool enable_losses, int round_decPow=-4)MRMAssay
isInSwath_(const std::vector< std::pair< double, double > > swathes, const double precursor_mz, const double product_mz)MRMAssayprotected
isSiteUIS_(const AASequence sequence, ReactionMonitoringTransition &tr)MRMAssayprotected
isUIS_(const double fragment_ion, std::vector< double > ions, const double mz_threshold)MRMAssayprotected
last_invoke_ProgressLoggermutableprotected
LogType enum nameProgressLogger
logTypeToFactoryName_(LogType type)ProgressLoggerprotectedstatic
MRMAssay()MRMAssay
nchoosekcombinations_(std::vector< size_t > n, size_t k)MRMAssayprotected
NONE enum valueProgressLogger
operator=(const ProgressLogger &other)ProgressLogger
PeptideVectorType typedefMRMAssay
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
ProteinVectorType typedefMRMAssay
reannotateTransitions(OpenMS::TargetedExperiment &exp, double mz_threshold, std::vector< String > fragment_types, std::vector< size_t > fragment_charges, bool enable_alternative_localizations, bool enable_reannotation, bool enable_losses, int round_decPow=-4)MRMAssay
recursion_depth_ProgressLoggerprotectedstatic
restrictTransitions(OpenMS::TargetedExperiment &exp, double lower_mz_limit, double upper_mz_limit, std::vector< std::pair< double, double > > swathes)MRMAssay
setLogType(LogType type) const ProgressLogger
setProgress(SignedSize value) const ProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) const ProgressLogger
TransitionVectorType typedefMRMAssay
type_ProgressLoggermutableprotected
uisTransitions(OpenMS::TargetedExperiment &exp, std::vector< String > fragment_types, std::vector< size_t > fragment_charges, bool enable_losses, bool enable_uis_scoring, bool enable_site_scoring, double mz_threshold, std::vector< std::pair< double, double > > swathes)MRMAssay
~MRMAssay()MRMAssay
~ProgressLogger()ProgressLogger

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:28 using doxygen 1.8.11