Home  · Classes  · Annotated Classes  · Modules  · Members  · Namespaces  · Related Pages
Digestor

Digests a protein database in-silico.

pot. predecessor tools $ \longrightarrow $ Digestor $ \longrightarrow $ pot. successor tools
none (FASTA input) IDFilter (peptide blacklist)

This application is used to digest a protein database to get all peptides given a cleavage enzyme. At the moment only trypsin is supported.

The output can be used as a blacklist filter input to IDFilter, to remove certain peptides.

Note
For mzid in-/out- put, due to legacy reason issues you are temporarily asked to use IDFileConverter as a wrapper. The command line parameters of this tool are:
 INI file documentation of this tool:  

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:26 using doxygen 1.8.11