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SuffixArrayPeptideFinder Member List

This is the complete list of members for SuffixArrayPeptideFinder, including all inherited members.

AVERAGE enum valueWeightWrapper
big_string_SuffixArrayPeptideFinderprotected
FASTAEntry typedefSuffixArrayPeptideFinder
getCandidates(std::vector< std::vector< std::pair< FASTAEntry, String > > > &candidates, const std::vector< double > &spec)SuffixArrayPeptideFinder
getCandidates(std::vector< std::vector< std::pair< FASTAEntry, String > > > &candidates, const String &DTA_file)SuffixArrayPeptideFinder
getModificationOutputMethod()SuffixArrayPeptideFinder
getNumberOfModifications() const SuffixArrayPeptideFinder
getTags()SuffixArrayPeptideFinder
getTolerance() const SuffixArrayPeptideFinder
getUseTags()SuffixArrayPeptideFinder
getWeight(const AASequence &aa) const WeightWrapper
getWeight(const EmpiricalFormula &ef) const WeightWrapper
getWeight(const Residue &r, Residue::ResidueType res_type=Residue::Full) const WeightWrapper
getWeightMode() const WeightWrapper
modification_output_method_SuffixArrayPeptideFinderprotected
MONO enum valueWeightWrapper
sa_SuffixArrayPeptideFinderprotected
setModificationOutputMethod(const String &s)SuffixArrayPeptideFinder
setNumberOfModifications(Size number_of_mods) const SuffixArrayPeptideFinder
setTags(const std::vector< String > &tags)SuffixArrayPeptideFinder
setTolerance(const double t)SuffixArrayPeptideFinder
setUseTags(bool use_tags)SuffixArrayPeptideFinder
setWeightMode(const WEIGHTMODE mode)WeightWrapper
SIZE_OF_WEIGHTMODE enum valueWeightWrapper
SuffixArrayPeptideFinder(const String &filename, const String &method, const WeightWrapper::WEIGHTMODE weight_mode=WeightWrapper::MONO)SuffixArrayPeptideFinder
SuffixArrayPeptideFinder(const SuffixArrayPeptideFinder &source)SuffixArrayPeptideFinder
vToString_(std::vector< String > v)SuffixArrayPeptideFinderprotected
WEIGHTMODE enum nameWeightWrapper
WeightWrapper()WeightWrapper
WeightWrapper(const WEIGHTMODE weight_mode)WeightWrapperexplicit
WeightWrapper(const WeightWrapper &source)WeightWrapper
~SuffixArrayPeptideFinder()SuffixArrayPeptideFindervirtual
~WeightWrapper()WeightWrappervirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:30 using doxygen 1.8.11