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MarkerMower.h
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35 #ifndef OPENMS_FILTERING_TRANSFORMERS_MARKERMOWER_H
36 #define OPENMS_FILTERING_TRANSFORMERS_MARKERMOWER_H
37 
41 
42 #include <vector>
43 #include <map>
44 
45 namespace OpenMS
46 {
52  class OPENMS_DLLAPI MarkerMower :
53  public DefaultParamHandler
54  {
55 public:
56 
57  // @name Constructors and Destructors
58  // @{
60  MarkerMower();
62  virtual ~MarkerMower();
63 
65  MarkerMower(const MarkerMower & source);
67  MarkerMower & operator=(const MarkerMower & source);
68  // @}
69 
70  // @name Accessors
71  // @{
73  template <typename SpectrumType>
74  void filterSpectrum(SpectrumType & spectrum)
75  {
76  typedef typename SpectrumType::Iterator Iterator;
77 
78  std::map<double, int> marks;
79  for (std::vector<PeakMarker *>::const_iterator cvit = markers_.begin(); cvit != markers_.end(); ++cvit)
80  {
81  std::map<double, bool> marked;
82  (*cvit)->apply(marked, spectrum);
83  for (std::map<double, bool>::const_iterator cmit = marked.begin(); cmit != marked.end(); ++cmit)
84  {
85  if (cmit->second)
86  {
87  marks[cmit->first]++;
88  }
89  }
90  }
91 
92  for (Iterator it = spectrum.begin(); it != spectrum.end(); )
93  {
94  if (marks[it->getMZ()] > 0)
95  {
96  ++it;
97  }
98  else
99  {
100  it = spectrum.erase(it);
101  }
102  }
103  }
104 
105  void filterPeakSpectrum(PeakSpectrum & spectrum);
106 
107  void filterPeakMap(PeakMap & exp);
108 
109  static const String getProductName()
110  {
111  return "MarkerMower";
112  }
113 
115  void insertmarker(PeakMarker * peak_marker);
116 
117  //TODO reimplement DefaultParamHandler::updateMembers_()
118 
119  // @}
120 
121 private:
123  std::vector<PeakMarker *> markers_;
124 
125  };
126 }
127 #endif // OPENMS_COMPARISON_CLUSTERING_MARKERMOWER_H
A more convenient string class.
Definition: String.h:57
MarkerMower uses PeakMarker to find peaks, those that are not marked get removed. ...
Definition: MarkerMower.h:52
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
PeakMarker marks peaks that seem to fulfill some criterion.
Definition: PeakMarker.h:48
void filterSpectrum(SpectrumType &spectrum)
Definition: MarkerMower.h:74
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
std::vector< PeakMarker * > markers_
used peak markers
Definition: MarkerMower.h:123
static const String getProductName()
Definition: MarkerMower.h:109

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:23 using doxygen 1.8.11