Simulates tandem MS signals for a given set of peptides. More...
#include <OpenMS/SIMULATION/RawTandemMSSignalSimulation.h>
Public Member Functions | |
RawTandemMSSignalSimulation & | operator= (const RawTandemMSSignalSimulation &source) |
void | generateRawTandemSignals (const SimTypes::FeatureMapSim &, SimTypes::MSSimExperiment &, SimTypes::MSSimExperiment &) |
Constructors and Destructors | |
RawTandemMSSignalSimulation () | |
Default constructor (hidden) More... | |
RawTandemMSSignalSimulation (SimTypes::MutableSimRandomNumberGeneratorPtr rng) | |
Constructor taking a random generator. More... | |
RawTandemMSSignalSimulation (const RawTandemMSSignalSimulation &source) | |
Copy constructor. More... | |
virtual | ~RawTandemMSSignalSimulation () |
Destructor. More... | |
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DefaultParamHandler (const String &name) | |
Constructor with name that is displayed in error messages. More... | |
DefaultParamHandler (const DefaultParamHandler &rhs) | |
Copy constructor. More... | |
virtual | ~DefaultParamHandler () |
Destructor. More... | |
virtual DefaultParamHandler & | operator= (const DefaultParamHandler &rhs) |
Assignment operator. More... | |
virtual bool | operator== (const DefaultParamHandler &rhs) const |
Equality operator. More... | |
void | setParameters (const Param ¶m) |
Sets the parameters. More... | |
const Param & | getParameters () const |
Non-mutable access to the parameters. More... | |
const Param & | getDefaults () const |
Non-mutable access to the default parameters. More... | |
const String & | getName () const |
Non-mutable access to the name. More... | |
void | setName (const String &name) |
Mutable access to the name. More... | |
const std::vector< String > & | getSubsections () const |
Non-mutable access to the registered subsections. More... | |
Protected Member Functions | |
void | generateMSESpectra_ (const SimTypes::FeatureMapSim &features, const SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &ms2) |
void | generatePrecursorSpectra_ (const SimTypes::FeatureMapSim &features, const SimTypes::MSSimExperiment &experiment, SimTypes::MSSimExperiment &ms2) |
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virtual void | updateMembers_ () |
This method is used to update extra member variables at the end of the setParameters() method. More... | |
void | defaultsToParam_ () |
Updates the parameters after the defaults have been set in the constructor. More... | |
Protected Attributes | |
SimTypes::MutableSimRandomNumberGeneratorPtr | rnd_gen_ |
Random number generator. More... | |
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Param | param_ |
Container for current parameters. More... | |
Param | defaults_ |
Container for default parameters. This member should be filled in the constructor of derived classes! More... | |
std::vector< String > | subsections_ |
Container for registered subsections. This member should be filled in the constructor of derived classes! More... | |
String | error_name_ |
Name that is displayed in error messages during the parameter checking. More... | |
bool | check_defaults_ |
If this member is set to false no checking if parameters in done;. More... | |
bool | warn_empty_defaults_ |
If this member is set to false no warning is emitted when defaults are empty;. More... | |
Simulates tandem MS signals for a given set of peptides.
Simulates tandem MS signals for a given set of peptides, with charge annotation, given detectabilities, predicted retention times and charge values.
Default constructor (hidden)
Constructor taking a random generator.
RawTandemMSSignalSimulation | ( | const RawTandemMSSignalSimulation & | source | ) |
Copy constructor.
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virtual |
Destructor.
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protected |
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protected |
void generateRawTandemSignals | ( | const SimTypes::FeatureMapSim & | , |
SimTypes::MSSimExperiment & | , | ||
SimTypes::MSSimExperiment & | |||
) |
RawTandemMSSignalSimulation& operator= | ( | const RawTandemMSSignalSimulation & | source | ) |
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protected |
Random number generator.
OpenMS / TOPP release 2.0.0 | Documentation generated on Wed Mar 30 2016 12:49:29 using doxygen 1.8.11 |