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OfflinePrecursorIonSelection Member List

This is the complete list of members for OfflinePrecursorIonSelection, including all inherited members.

calculateXICs_(const FeatureMap &features, const std::vector< std::vector< std::pair< Size, Size > > > &mass_ranges, const MSExperiment< InputPeakType > &experiment, const std::set< Int > &charges_set, std::vector< std::vector< std::pair< Size, double > > > &xics)OfflinePrecursorIonSelectionprivate
check_defaults_DefaultParamHandlerprotected
checkMassRanges_(std::vector< std::vector< std::pair< Size, Size > > > &mass_ranges, const MSExperiment< InputPeakType > &experiment)OfflinePrecursorIonSelectionprivate
createProteinSequenceBasedLPInclusionList(String include, String rt_model_file, String pt_model_file, FeatureMap &precursors)OfflinePrecursorIonSelection
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getDefaults() const DefaultParamHandler
getLPSolver()OfflinePrecursorIonSelectioninline
getMassRanges(const FeatureMap &features, const MSExperiment< InputPeakType > &experiment, std::vector< std::vector< std::pair< Size, Size > > > &indices)OfflinePrecursorIonSelection
getName() const DefaultParamHandler
getParameters() const DefaultParamHandler
getSubsections() const DefaultParamHandler
IndexTriple typedefOfflinePrecursorIonSelection
makePrecursorSelectionForKnownLCMSMap(const FeatureMap &features, const MSExperiment< InputPeakType > &experiment, MSExperiment< InputPeakType > &ms2, std::set< Int > &charges_set, bool feature_based)OfflinePrecursorIonSelection
OfflinePrecursorIonSelection()OfflinePrecursorIonSelection
operator=(const DefaultParamHandler &rhs)DefaultParamHandlervirtual
operator==(const DefaultParamHandler &rhs) const DefaultParamHandlervirtual
param_DefaultParamHandlerprotected
setLPSolver(LPWrapper::SOLVER solver)OfflinePrecursorIonSelectioninline
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
solver_OfflinePrecursorIonSelectionprivate
subsections_DefaultParamHandlerprotected
updateExclusionList_(std::vector< std::pair< T, Size > > &exclusion_list)OfflinePrecursorIonSelectionprivate
updateExclusionList_(std::map< std::pair< double, double >, Size, PairComparatorSecondElement< std::pair< double, double > > > &exclusion_list)OfflinePrecursorIonSelectioninlineprivate
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~OfflinePrecursorIonSelection()OfflinePrecursorIonSelectionvirtual

OpenMS / TOPP release 2.0.0 Documentation generated on Wed Mar 30 2016 12:49:29 using doxygen 1.8.11