public static class CollectHiSeqXPfFailMetrics.PFFailDetailedMetric
extends htsjdk.samtools.metrics.MetricBase
Modifier and Type | Field | Description |
---|---|---|
CollectHiSeqXPfFailMetrics.ReadClassifier.PfFailReason |
CLASSIFICATION |
The classification of this read: {EMPTY, POLYCLONAL, MISALIGNED, UNKNOWN}
(See PFFailSummaryMetric for explanation regarding the possible classification.)
|
int |
NUM_N |
The number of Ns found in this read
|
int |
NUM_Q_GT_TWO |
The number of Quality scores greater than 2 found in this read
|
Integer |
TILE |
The Tile that is described by this metric
|
int |
X |
The X coordinate of the read within the tile
|
int |
Y |
The Y coordinate of the read within the tile
|
Constructor | Description |
---|---|
PFFailDetailedMetric() |
This ctor is necessary for when reading metrics from file
|
PFFailDetailedMetric(Integer TILE,
int x,
int y,
int NUM_N,
int NUM_Q_GT_TWO,
CollectHiSeqXPfFailMetrics.ReadClassifier.PfFailReason CLASSIFICATION) |
public Integer TILE
public int X
public int Y
public int NUM_N
public int NUM_Q_GT_TWO
public CollectHiSeqXPfFailMetrics.ReadClassifier.PfFailReason CLASSIFICATION
public PFFailDetailedMetric(Integer TILE, int x, int y, int NUM_N, int NUM_Q_GT_TWO, CollectHiSeqXPfFailMetrics.ReadClassifier.PfFailReason CLASSIFICATION)
public PFFailDetailedMetric()