Cloneable
, PhysicalLocation
ReadEndsForMarkDuplicatesWithBarcodes
public class ReadEndsForMarkDuplicates extends ReadEnds implements Cloneable
Modifier and Type | Field | Description |
---|---|---|
long |
read1IndexInFile |
|
long |
read2IndexInFile |
|
short |
score |
|
protected static int |
SIZE_OF |
NO_VALUE
tile, x, y
F, FF, FR, isOpticalDuplicate, libraryId, orientation, orientationForOpticalDuplicates, R, read1Coordinate, read1ReferenceIndex, read2Coordinate, read2ReferenceIndex, readGroup, RF, RR
Constructor | Description |
---|---|
ReadEndsForMarkDuplicates() |
|
ReadEndsForMarkDuplicates(ReadEndsForMarkDuplicates read) |
Modifier and Type | Method | Description |
---|---|---|
ReadEndsForMarkDuplicates |
clone() |
|
static int |
getSizeOf() |
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
hasLocation
getTile, getX, getY, setTile
setX, setY
getLibraryId, getOrientationByte, getReadGroup, isPaired, setLibraryId, setReadGroup
protected static final int SIZE_OF
public short score
public long read1IndexInFile
public long read2IndexInFile
public ReadEndsForMarkDuplicates()
public ReadEndsForMarkDuplicates(ReadEndsForMarkDuplicates read)
public static int getSizeOf()
public ReadEndsForMarkDuplicates clone()