public class FingerprintingDetailMetrics
extends htsjdk.samtools.metrics.MetricBase
Modifier and Type | Field | Description |
---|---|---|
String |
CHROM |
The chromosome on which the SNP resides.
|
String |
EXPECTED_GENOTYPE |
The expected genotype of the sample at the SNP locus.
|
double |
LOD |
The LOD score for OBSERVED_GENOTYPE vs.
|
int |
OBS_A |
The number of observations of the first, or A, allele of the SNP in the sequencing data.
|
int |
OBS_B |
The number of observations of the second, or B, allele of the SNP in the sequencing data.
|
String |
OBSERVED_GENOTYPE |
The most likely genotype given the observed evidence at the SNP locus in the sequencing data.
|
int |
POSITION |
The position of the SNP on the chromosome.
|
String |
READ_GROUP |
The sequencing read group from which sequence data was fingerprinted.
|
String |
SAMPLE |
The name of the sample who's genotypes the sequence data was compared to.
|
String |
SNP |
The name of a representative SNP within the haplotype that was compared.
|
String |
SNP_ALLELES |
The possible alleles for the SNP.
|
Constructor | Description |
---|---|
FingerprintingDetailMetrics() |
public String READ_GROUP
public String SAMPLE
public String SNP
public String SNP_ALLELES
public String CHROM
public int POSITION
public String EXPECTED_GENOTYPE
public String OBSERVED_GENOTYPE
public double LOD
public int OBS_A
public int OBS_B