public class IlluminaPhasingMetrics
extends htsjdk.samtools.metrics.MetricBase
Modifier and Type | Field | Description |
---|---|---|
long |
LANE |
Illumina flowcell lane number
|
double |
PHASING_APPLIED |
Median phasing value across all tiles in a lane, applied to the first and second template reads
|
double |
PREPHASING_APPLIED |
Median pre-phasing value across all tiles in a lane, applied to the first and second template reads
|
String |
TYPE_NAME |
Defines an Illumina template read number (first or second)
|
Constructor | Description |
---|---|
IlluminaPhasingMetrics() |
Modifier and Type | Method | Description |
---|---|---|
static String |
getExtension() |
This property is not exposed in a field to avoid complications with MetricBase's dependency on reflection.
|
static Collection<IlluminaPhasingMetrics> |
getPhasingMetricsForTiles(long lane,
Collection<Tile> tilesForLane) |
Calculate the median phasing & prephasing values for a lane's tiles and create the appropriate IlluminaPhasingMetrics for them
|
public long LANE
public String TYPE_NAME
public double PHASING_APPLIED
public double PREPHASING_APPLIED
public static Collection<IlluminaPhasingMetrics> getPhasingMetricsForTiles(long lane, Collection<Tile> tilesForLane)
public static String getExtension()