public class GenotypeConcordanceDetailMetrics
extends htsjdk.samtools.metrics.MetricBase
Modifier and Type | Field | Description |
---|---|---|
String |
CALL_SAMPLE |
The name of the 'call' sample
|
GenotypeConcordanceStates.CallState |
CALL_STATE |
The state of the 'call' sample (i.e.
|
String |
CONTINGENCY_VALUES |
The list of contingency table values (TP, TN, FP, FN) that are deduced from the truth/call state comparison, given the reference.
|
long |
COUNT |
The number of events of type TRUTH_STATE and CALL_STATE for the EVENT_TYPE and SAMPLEs
|
String |
TRUTH_SAMPLE |
The name of the 'truth' sample
|
GenotypeConcordanceStates.TruthState |
TRUTH_STATE |
The state of the 'truth' sample (i.e.
|
htsjdk.variant.variantcontext.VariantContext.Type |
VARIANT_TYPE |
The type of the event (i.e.
|
Constructor | Description |
---|---|
GenotypeConcordanceDetailMetrics() |
public htsjdk.variant.variantcontext.VariantContext.Type VARIANT_TYPE
public String TRUTH_SAMPLE
public String CALL_SAMPLE
public GenotypeConcordanceStates.TruthState TRUTH_STATE
public GenotypeConcordanceStates.CallState CALL_STATE
public long COUNT
public String CONTINGENCY_VALUES