PhysicalLocationForMateCigar
, PhysicalLocationInt
, PhysicalLocationShort
, ReadEnds
, ReadEndsForMarkDuplicates
, ReadEndsForMarkDuplicatesWithBarcodes
, ReadEndsForMateCigar
public interface PhysicalLocation
Modifier and Type | Field | Description |
---|---|---|
static int |
NO_VALUE |
Modifier and Type | Method | Description |
---|---|---|
short |
getLibraryId() |
|
short |
getReadGroup() |
|
short |
getTile() |
|
int |
getX() |
|
int |
getY() |
|
default boolean |
hasLocation() |
Default implementation of a method to check whether real location data has been set.
|
void |
setLibraryId(short libraryId) |
|
void |
setReadGroup(short rg) |
|
void |
setTile(short tile) |
|
void |
setX(int x) |
|
void |
setY(int y) |
static final int NO_VALUE
short getReadGroup()
void setReadGroup(short rg)
short getTile()
void setTile(short tile)
int getX()
void setX(int x)
int getY()
void setY(int y)
short getLibraryId()
void setLibraryId(short libraryId)
default boolean hasLocation()