AlignmentSummaryMetricsCollector
, RrbsMetricsCollector
public abstract class SAMRecordAndReferenceMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends Comparable> extends MultiLevelCollector<BEAN,HKEY,SAMRecordAndReference>
UNKNOWN
Constructor | Description |
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SAMRecordAndReferenceMultiLevelCollector() |
Modifier and Type | Method | Description |
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protected SAMRecordAndReference |
makeArg(htsjdk.samtools.SAMRecord samRec,
htsjdk.samtools.reference.ReferenceSequence refSeq) |
acceptRecord, addAllLevelsToFile, finish, getAllReadsCollector, makeAllReadCollector, makeChildCollector, makeLibraryCollector, makeReadGroupCollector, makeSampleCollector, setup
public SAMRecordAndReferenceMultiLevelCollector()
protected SAMRecordAndReference makeArg(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq)
makeArg
in class MultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,HKEY extends Comparable,SAMRecordAndReference>