public class PosParser extends PerTileParser<picard.illumina.parser.PositionalData>
Constructor | Description |
---|---|
PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles,
int startingTile,
IlluminaFileUtil.SupportedIlluminaFormat fileType) |
|
PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles,
IlluminaFileUtil.SupportedIlluminaFormat fileType) |
Modifier and Type | Method | Description |
---|---|---|
protected htsjdk.samtools.util.CloseableIterator<picard.illumina.parser.PositionalData> |
makeTileIterator(File file) |
Make an CloseableIterator
|
Set<IlluminaDataType> |
supportedTypes() |
forEachRemaining
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
close, getTileOfNextCluster, hasNext, maybeAdvance, next, remove, seekToTile, verifyData
public PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles, IlluminaFileUtil.SupportedIlluminaFormat fileType)
public PosParser(picard.illumina.parser.IlluminaFileMap tilesToFiles, int startingTile, IlluminaFileUtil.SupportedIlluminaFormat fileType)
protected htsjdk.samtools.util.CloseableIterator<picard.illumina.parser.PositionalData> makeTileIterator(File file)
makeTileIterator
in class PerTileParser<picard.illumina.parser.PositionalData>
file
- A file for the current tile being parsedpublic Set<IlluminaDataType> supportedTypes()