VariantFilter
public class AlleleBalanceFilter extends Object implements VariantFilter
Modifier and Type | Field | Description |
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static String |
AB_FILTER |
The filter string used for sites that fail the allele balance filter.
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Constructor | Description |
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AlleleBalanceFilter(double hetAlleleBalance) |
Modifier and Type | Method | Description |
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String |
filter(htsjdk.variant.variantcontext.VariantContext ctx) |
Check to see if the VariantContext should have a filter applied to it.
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List<htsjdk.variant.vcf.VCFFilterHeaderLine> |
headerLines() |
Return VCF header lines that define filters that may be applied by the VariantFilter.
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public static final String AB_FILTER
public List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()
VariantFilter
headerLines
in interface VariantFilter
public String filter(htsjdk.variant.variantcontext.VariantContext ctx)
VariantFilter
filter
in interface VariantFilter