picard.analysis
Interfaces
CollectMultipleMetrics.ProgramInterface
Classes
AdapterUtility
AlignmentSummaryMetrics
AlignmentSummaryMetricsCollector
BaseDistributionByCycleMetrics
ChimeraUtil
CollectAlignmentSummaryMetrics
CollectBaseDistributionByCycle
CollectGcBiasMetrics
CollectInsertSizeMetrics
CollectJumpingLibraryMetrics
CollectMultipleMetrics
CollectOxoGMetrics
CollectOxoGMetrics.CpcgMetrics
CollectQualityYieldMetrics
CollectQualityYieldMetrics.QualityYieldMetrics
CollectRawWgsMetrics
CollectRawWgsMetrics.RawWgsMetrics
CollectRnaSeqMetrics
CollectRrbsMetrics
CollectWgsMetrics
CollectWgsMetrics.WgsMetrics
CollectWgsMetricsFromQuerySorted
CollectWgsMetricsFromQuerySorted.QuerySortedSeqMetrics
CollectWgsMetricsFromSampledSites
CollectWgsMetricsFromSampledSites.SampledWgsMetrics
CollectWgsMetricsWithNonZeroCoverage
CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage
CompareMetrics
FingerprintingDetailMetrics
FingerprintingSummaryMetrics
GcBiasDetailMetrics
GcBiasMetricsCollector
GcBiasSummaryMetrics
GcBiasUtils
InsertSizeMetrics
JumpingLibraryMetrics
MeanQualityByCycle
MergeableMetricBase
QualityScoreDistribution
RnaSeqMetrics
RrbsCpgDetailMetrics
RrbsMetricsCollector
RrbsSummaryMetrics
SinglePassSamProgram
TheoreticalSensitivity
TheoreticalSensitivity.RouletteWheel
Enums
AlignmentSummaryMetrics.Category
CollectMultipleMetrics.Program
CollectWgsMetricsFromQuerySorted.FILTERING_STRINGENCY
CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage.Category
MetricAccumulationLevel
Annotation Types
MergeableMetricBase.MergeByAdding
MergeableMetricBase.MergeByAssertEquals
MergeableMetricBase.MergingIsManual
MergeableMetricBase.NoMergingIsDerived
MergeableMetricBase.NoMergingKeepsValue