public class GcBiasDetailMetrics extends MultilevelMetrics
Modifier and Type | Field | Description |
---|---|---|
String |
ACCUMULATION_LEVEL |
|
double |
ERROR_BAR_WIDTH |
The radius of error bars in this bin based on the number of observations made.
|
int |
GC |
The G+C content of the reference sequence represented by this bin.
|
int |
MEAN_BASE_QUALITY |
The mean quality (determined via the error rate) of all bases of all reads that are assigned to windows of this GC.
|
double |
NORMALIZED_COVERAGE |
The ratio of "coverage" in this GC bin vs.
|
long |
READ_STARTS |
The number of reads whose start position is at the start of a window of this GC.
|
String |
READS_USED |
This option is used to mark including or excluding duplicates.
|
int |
WINDOWS |
The number of windows on the reference genome that have this G+C content.
|
LIBRARY, READ_GROUP, SAMPLE
Constructor | Description |
---|---|
GcBiasDetailMetrics() |
public String ACCUMULATION_LEVEL
public String READS_USED
public int GC
public int WINDOWS
public long READ_STARTS
public int MEAN_BASE_QUALITY
public double NORMALIZED_COVERAGE
public double ERROR_BAR_WIDTH