public static class TargetMetricsCollector.Coverage extends Object
Modifier and Type | Field | Description |
---|---|---|
long |
readCount |
Constructor | Description |
---|---|
Coverage(htsjdk.samtools.util.Interval i,
int padding) |
Constructs a new coverage object for the provided mapping with the desired padding either side.
|
Modifier and Type | Method | Description |
---|---|---|
void |
addBase(int offset) |
Adds a single point of depth at the desired offset into the coverage array.
|
int[] |
getDepths() |
Gets the coverage depths as an array of ints.
|
int |
getTotal() |
|
boolean |
hasCoverage() |
Returns true if any base in the range has coverage of > 0
|
void |
incrementReadCount() |
Increments the # of reads mapping to this target.
|
String |
toString() |
public Coverage(htsjdk.samtools.util.Interval i, int padding)
public void addBase(int offset)
public void incrementReadCount()
public boolean hasCoverage()
public int[] getDepths()
public int getTotal()