Cloneable
, PhysicalLocation
public class ReadEndsForMarkDuplicatesWithBarcodes extends ReadEndsForMarkDuplicates
Modifier and Type | Field | Description |
---|---|---|
int |
barcode |
|
int |
readOneBarcode |
|
int |
readTwoBarcode |
NO_VALUE
tile, x, y
F, FF, FR, isOpticalDuplicate, libraryId, orientation, orientationForOpticalDuplicates, R, read1Coordinate, read1ReferenceIndex, read2Coordinate, read2ReferenceIndex, readGroup, RF, RR
read1IndexInFile, read2IndexInFile, score, SIZE_OF
Constructor | Description |
---|---|
ReadEndsForMarkDuplicatesWithBarcodes() |
|
ReadEndsForMarkDuplicatesWithBarcodes(ReadEndsForMarkDuplicates read) |
|
ReadEndsForMarkDuplicatesWithBarcodes(ReadEndsForMarkDuplicatesWithBarcodes read) |
Modifier and Type | Method | Description |
---|---|---|
ReadEndsForMarkDuplicatesWithBarcodes |
clone() |
|
static int |
getSizeOf() |
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
hasLocation
getTile, getX, getY, setTile
setX, setY
getLibraryId, getOrientationByte, getReadGroup, isPaired, setLibraryId, setReadGroup
public int barcode
public int readOneBarcode
public int readTwoBarcode
public ReadEndsForMarkDuplicatesWithBarcodes()
public ReadEndsForMarkDuplicatesWithBarcodes(ReadEndsForMarkDuplicates read)
public ReadEndsForMarkDuplicatesWithBarcodes(ReadEndsForMarkDuplicatesWithBarcodes read)
public ReadEndsForMarkDuplicatesWithBarcodes clone()
clone
in class ReadEndsForMarkDuplicates
public static int getSizeOf()