htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
, Cloneable
ReadEndsForMarkDuplicatesWithBarcodesCodec
public class ReadEndsForMarkDuplicatesCodec extends Object implements htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
Modifier and Type | Field | Description |
---|---|---|
protected DataInputStream |
in |
|
protected DataOutputStream |
out |
Constructor | Description |
---|---|
ReadEndsForMarkDuplicatesCodec() |
Modifier and Type | Method | Description |
---|---|---|
htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates> |
clone() |
|
ReadEndsForMarkDuplicates |
decode() |
|
void |
encode(ReadEndsForMarkDuplicates read) |
|
DataInputStream |
getInputStream() |
|
DataOutputStream |
getOutputStream() |
|
void |
setInputStream(InputStream is) |
|
void |
setOutputStream(OutputStream os) |
protected DataInputStream in
protected DataOutputStream out
public htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates> clone()
clone
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
clone
in class Object
public void setOutputStream(OutputStream os)
setOutputStream
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
public void setInputStream(InputStream is)
setInputStream
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
public DataInputStream getInputStream()
public DataOutputStream getOutputStream()
public void encode(ReadEndsForMarkDuplicates read)
encode
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
public ReadEndsForMarkDuplicates decode()
decode
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>