VariantFilter
public class FisherStrandFilter extends Object implements VariantFilter
Constructor | Description |
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FisherStrandFilter(double maxPhredScalePValue) |
Modifier and Type | Method | Description |
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String |
filter(htsjdk.variant.variantcontext.VariantContext ctx) |
Check to see if the VariantContext should have a filter applied to it.
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List<htsjdk.variant.vcf.VCFFilterHeaderLine> |
headerLines() |
Return VCF header lines that define filters that may be applied by the VariantFilter.
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public List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()
VariantFilter
headerLines
in interface VariantFilter
public String filter(htsjdk.variant.variantcontext.VariantContext ctx)
VariantFilter
filter
in interface VariantFilter