public static class CollectVariantCallingMetrics.VariantCallingDetailMetrics extends CollectVariantCallingMetrics.VariantCallingSummaryMetrics
Modifier and Type | Field | Description |
---|---|---|
double |
HET_HOMVAR_RATIO |
(count of hets)/(count of homozygous non-ref) for this sample
|
String |
SAMPLE_ALIAS |
The name of the sample being assayed
|
DBSNP_INS_DEL_RATIO, DBSNP_TITV, FILTERED_INDELS, FILTERED_SNPS, NOVEL_INDELS, NOVEL_INS_DEL_RATIO, NOVEL_SNPS, NOVEL_TITV, NUM_IN_DB_SNP, NUM_IN_DB_SNP_COMPLEX_INDELS, NUM_IN_DB_SNP_INDELS, NUM_IN_DB_SNP_MULTIALLELIC, NUM_SINGLETONS, PCT_DBSNP, PCT_DBSNP_INDELS, SNP_REFERENCE_BIAS, TOTAL_COMPLEX_INDELS, TOTAL_INDELS, TOTAL_MULTIALLELIC_SNPS, TOTAL_SNPS
Constructor | Description |
---|---|
VariantCallingDetailMetrics() |
Modifier and Type | Method | Description |
---|---|---|
static void |
foldInto(CollectVariantCallingMetrics.VariantCallingDetailMetrics target,
Collection<CollectVariantCallingMetrics.VariantCallingDetailMetrics> metrics) |
|
static String |
getFileExtension() |
|
void |
updateDerivedValuesInPlace() |
public String SAMPLE_ALIAS
public double HET_HOMVAR_RATIO
public static String getFileExtension()
public static void foldInto(CollectVariantCallingMetrics.VariantCallingDetailMetrics target, Collection<CollectVariantCallingMetrics.VariantCallingDetailMetrics> metrics)
public void updateDerivedValuesInPlace()
updateDerivedValuesInPlace
in class CollectVariantCallingMetrics.VariantCallingSummaryMetrics