public class GcBiasSummaryMetrics extends MultilevelMetrics
Modifier and Type | Field | Description |
---|---|---|
String |
ACCUMULATION_LEVEL |
|
long |
ALIGNED_READS |
The total number of aligned reads used to compute the gc bias metrics.
|
double |
AT_DROPOUT |
Illumina-style AT dropout metric.
|
double |
GC_DROPOUT |
Illumina-style GC dropout metric.
|
double |
GC_NC_0_19 |
Normalized coverage over quintile of GC content ranging from 0 - 19.
|
double |
GC_NC_20_39 |
Normalized coverage over each quintile of GC content ranging from 20 - 39.
|
double |
GC_NC_40_59 |
Normalized coverage over each quintile of GC content ranging from 40 - 59.
|
double |
GC_NC_60_79 |
Normalized coverage over each quintile of GC content ranging from 60 - 79.
|
double |
GC_NC_80_100 |
Normalized coverage over each quintile of GC content ranging from 80 - 100.
|
String |
READS_USED |
This option is used to mark including or excluding duplicates.
|
long |
TOTAL_CLUSTERS |
The total number of clusters that were seen in the gc bias calculation.
|
int |
WINDOW_SIZE |
The window size on the genome used to calculate the GC of the sequence.
|
LIBRARY, READ_GROUP, SAMPLE
Constructor | Description |
---|---|
GcBiasSummaryMetrics() |
public String ACCUMULATION_LEVEL
public String READS_USED
public int WINDOW_SIZE
public long TOTAL_CLUSTERS
public long ALIGNED_READS
public double AT_DROPOUT
public double GC_DROPOUT
public double GC_NC_0_19
public double GC_NC_20_39
public double GC_NC_40_59
public double GC_NC_60_79
public double GC_NC_80_100