public class MakeSitesOnlyVcf extends CommandLineProgram
Modifier and Type | Field | Description |
---|---|---|
File |
INPUT |
|
File |
OUTPUT |
|
Set<String> |
SAMPLE |
COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, TMP_DIR, VALIDATION_STRINGENCY, VERBOSITY
Constructor | Description |
---|---|
MakeSitesOnlyVcf() |
Modifier and Type | Method | Description |
---|---|---|
protected int |
doWork() |
Do the work after command line has been parsed.
|
static void |
main(String[] args) |
customCommandLineValidation, getCommandLine, getCommandLineParser, getDefaultHeaders, getMetricsFile, getNestedOptions, getNestedOptionsForHelp, getStandardUsagePreamble, getVersion, instanceMain, instanceMainWithExit, parseArgs, setDefaultHeaders
@Option(shortName="O", doc="Output VCF or BCF to emit without per-sample info.") public File OUTPUT
public static void main(String[] args)
protected int doWork()
CommandLineProgram
doWork
in class CommandLineProgram