Class SAMFileSource


  • public class SAMFileSource
    extends Object
    Represents the origin of a SAM record.
    • Constructor Detail

      • SAMFileSource

        public SAMFileSource​(SamReader reader,
                             SAMFileSpan filePointer)
        Create a new SAMFileSource with the given reader and file pointer.
        Parameters:
        reader - reader.
        filePointer - File pointer.
    • Method Detail

      • getReader

        public SamReader getReader()
        Retrieves the reader from which this read was initially retrieved.
        Returns:
        The reader.
      • getFilePointer

        public SAMFileSpan getFilePointer()
        A pointer to the region on disk from which the read originated.
        Returns:
        A pointer within the file.