public final class QualityUtil extends Object
Constructor | Description |
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QualityUtil() |
Modifier and Type | Method | Description |
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static double |
getErrorProbabilityFromPhredScore(int i) |
Given a phred score between 0 and 100 returns the probability of error.
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static int |
getPhredScoreFromErrorProbability(double probability) |
Gets the phred score for any given probability of error.
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static int |
getPhredScoreFromObsAndErrors(double observations,
double errors) |
Gets the phred score given the specified observations and errors.
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static double |
sumOfErrorProbabilities(SAMRecord rec) |
Calculates the sum of error probabilities for all read bases in the SAM record.
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public static double getErrorProbabilityFromPhredScore(int i)
public static int getPhredScoreFromErrorProbability(double probability)
public static int getPhredScoreFromObsAndErrors(double observations, double errors)
public static double sumOfErrorProbabilities(SAMRecord rec)