Locatable
, BEDFeature
, Feature
public class FullBEDFeature extends SimpleBEDFeature implements BEDFeature
Modifier and Type | Class | Description |
---|---|---|
class |
FullBEDFeature.Exon |
A sub region of a feature.
|
class |
FullBEDFeature.Exon2 |
chr, end, start, strand
Constructor | Description |
---|---|
FullBEDFeature(String chr,
int start,
int end) |
Modifier and Type | Method | Description |
---|---|---|
void |
addExon(int exonStart,
int exonEnd,
int cdStart,
int cdEnd,
int exonNumber) |
|
void |
addExon(FullBEDFeature.Exon exon) |
|
List<FullBEDFeature.Exon> |
getExons() |
|
void |
setExons(List<FullBEDFeature.Exon> exons) |
getColor, getDescription, getLink, getName, getScore, getStrand, getType
contains, contigsMatch, getContig, getEnd, getLengthOnReference, getStart, overlaps, withinDistanceOf
public FullBEDFeature(String chr, int start, int end)
public List<FullBEDFeature.Exon> getExons()
getExons
in interface BEDFeature
getExons
in class SimpleBEDFeature
public void setExons(List<FullBEDFeature.Exon> exons)
public void addExon(FullBEDFeature.Exon exon)
public void addExon(int exonStart, int exonEnd, int cdStart, int cdEnd, int exonNumber)