SamRecordFilter
public class OverclippedReadFilter extends Object implements SamRecordFilter
Constructor | Description |
---|---|
OverclippedReadFilter(int unclippedBasesThreshold,
boolean filterSingleEndClips) |
Modifier and Type | Method | Description |
---|---|---|
boolean |
filterOut(SAMRecord record) |
Determines whether a SAMRecord matches this filter
|
boolean |
filterOut(SAMRecord first,
SAMRecord second) |
Determines whether a pair of SAMRecords matches this filter
|
public OverclippedReadFilter(int unclippedBasesThreshold, boolean filterSingleEndClips)
public boolean filterOut(SAMRecord record)
SamRecordFilter
filterOut
in interface SamRecordFilter
record
- the SAMRecord to evaluatepublic boolean filterOut(SAMRecord first, SAMRecord second)
SamRecordFilter
filterOut
in interface SamRecordFilter
first
- the first SAMRecord to evaluatesecond
- the second SAMRecord to evaluate