public class BinningIndexBuilder extends Object
Modifier and Type | Class | Description |
---|---|---|
static interface |
BinningIndexBuilder.FeatureToBeIndexed |
coordinates are 1-based, inclusive
|
Constructor | Description |
---|---|
BinningIndexBuilder(int referenceSequence) |
|
BinningIndexBuilder(int referenceSequence,
int sequenceLength) |
Modifier and Type | Method | Description |
---|---|---|
BinningIndexContent |
generateIndexContent() |
Creates the BAMIndexContent for this reference.
|
void |
processFeature(BinningIndexBuilder.FeatureToBeIndexed feature) |
public BinningIndexBuilder(int referenceSequence, int sequenceLength)
referenceSequence
- sequenceLength
- 0 implies unknown length. Known length will reduce memory use.public BinningIndexBuilder(int referenceSequence)
public void processFeature(BinningIndexBuilder.FeatureToBeIndexed feature)
public BinningIndexContent generateIndexContent()