AggregateFilter
, AlignedFilter
, DuplicateReadFilter
, FailsVendorReadQualityFilter
, InsertSizeFilter
, IntervalFilter
, IntervalKeepPairFilter
, JavascriptSamRecordFilter
, MappingQualityFilter
, NotPrimaryAlignmentFilter
, OverclippedReadFilter
, ReadNameFilter
, SecondaryAlignmentFilter
, SecondaryOrSupplementaryFilter
, SolexaNoiseFilter
, TagFilter
, WholeReadClippedFilter
public interface SamRecordFilter
Modifier and Type | Method | Description |
---|---|---|
boolean |
filterOut(SAMRecord record) |
Determines whether a SAMRecord matches this filter
|
boolean |
filterOut(SAMRecord first,
SAMRecord second) |
Determines whether a pair of SAMRecords matches this filter
|
boolean filterOut(SAMRecord record)
record
- the SAMRecord to evaluate