AffyProbesMatch-class | Class "AffyProbesMatch" |
appendCdfEnvAffy | append probe sets to a CdfEnvAffy |
buildCdfEnv.biostrings | Build CDF environments |
buildCdfEnv.matchprobes | functions related to cdfenvs |
CdfEnv | functions related to cdfenvs |
CdfEnvAffy-class | Class "CdfEnvAffy" |
cdfenvEx | CdfEnvAffy |
coerce-method | Class "CdfEnvAffy" |
combine-method | Class "AffyProbesMatch" |
copyCdfEnvAffy | make a copy of a CdfEnvAffy |
countduplicated | Count the number of times probes are used |
countskip.FASTA.entries | Functions to work with FASTA files / connections |
geneNames-method | Class "CdfEnvAffy" |
geneNames.CdfEnvAffy | get the names of the known probe sets |
getCdfEnvAffy | functions related to cdfenvs |
getxy.probeseq | A function to get the XY coordinates from a probes sequences data frame |
grep.FASTA.entry | Functions to work with FASTA files / connections |
index2xy | Functions to shuttle from indexes to XY coordinates |
index2xy-method | Class "CdfEnvAffy" |
index2xy.CdfEnvAffy | Functions to shuttle from indexes to XY coordinates |
indexProbes-method | Class "CdfEnvAffy" |
indexProbes.CdfEnvAffy | indexes for probes |
matchAffyProbes | Match the probes on an Affymetrix array |
mmProbes | Match the probes on an Affymetrix array |
plot-method | Class "CdfEnvAffy" |
plot.CdfEnvAffy | A function to 'plot' a CdfEnvAffy |
print.FASTA | Functions to work with FASTA files / connections |
printValidCdfEnvAffy | Check validity of a CdfEnvAffy. |
read.FASTA.entry | Functions to work with FASTA files / connections |
read.n.FASTA.entries | Functions to work with FASTA files / connections |
read.n.FASTA.entries.split | Functions to work with FASTA files / connections |
read.n.FASTA.headers | Functions to work with FASTA files / connections |
read.n.FASTA.sequences | Functions to work with FASTA files / connections |
removeIndex | A function to remove probes in an environment |
show-method | Class "AffyProbesMatch" |
show-method | Class "CdfEnvAffy" |
skip.FASTA.entry | Functions to work with FASTA files / connections |
toHypergraph | Transform to an hypergraph |
toHypergraph-method | Class "AffyProbesMatch" |
toHypergraph-method | Class "CdfEnvAffy" |
unique.CdfEnvAffy | Remove duplicated elements from a CdfEnvAffy |
validAffyBatch | Check validity of a CdfEnvAffy. |
validCdfEnvAffy | Check validity of a CdfEnvAffy. |
wrapCdfEnvAffy | functions related to cdfenvs |
write.FASTA | Functions to work with FASTA files / connections |
xy2index | Functions to shuttle from indexes to XY coordinates |
xy2index-method | Class "CdfEnvAffy" |
xy2index.CdfEnvAffy | Functions to shuttle from indexes to XY coordinates |
[-method | Class "CdfEnvAffy" |