public class ContainerParser extends Object
Constructor | Description |
---|---|
ContainerParser(SAMFileHeader samFileHeader) |
Modifier and Type | Method | Description |
---|---|---|
List<CramCompressionRecord> |
getRecords(Container container,
ArrayList<CramCompressionRecord> records,
ValidationStringency validationStringency) |
|
Map<Integer,AlignmentSpan> |
getReferences(Container container,
ValidationStringency validationStringency) |
public ContainerParser(SAMFileHeader samFileHeader)
public List<CramCompressionRecord> getRecords(Container container, ArrayList<CramCompressionRecord> records, ValidationStringency validationStringency) throws IllegalArgumentException, IllegalAccessException
public Map<Integer,AlignmentSpan> getReferences(Container container, ValidationStringency validationStringency) throws IOException
IOException