public class BAMIndexMetaData extends Object
Modifier and Type | Method | Description |
---|---|---|
int |
getAlignedRecordCount() |
|
static BAMIndexMetaData[] |
getIndexStats(BAMFileReader bam) |
Prints meta-data statistics from BAM index (.bai) file
Statistics include count of aligned and unaligned reads for each reference sequence
and a count of all records with no start coordinate
|
int |
getUnalignedRecordCount() |
|
static void |
printIndexStats(File inputBamFile) |
Prints meta-data statistics from BAM index (.bai) file
Statistics include count of aligned and unaligned reads for each reference sequence
and a count of all records with no start coordinate
|
public int getAlignedRecordCount()
public int getUnalignedRecordCount()
public static void printIndexStats(File inputBamFile)
public static BAMIndexMetaData[] getIndexStats(BAMFileReader bam)