Constructor | Description |
---|---|
SRAUnalignmentIterator(SRAAccession accession,
ngs.ReadCollection run,
SAMFileHeader header,
SRAIterator.RecordRangeInfo recordRangeInfo,
Chunk chunk) |
Modifier and Type | Method | Description |
---|---|---|
boolean |
hasNext() |
|
SAMRecord |
next() |
|
void |
remove() |
|
void |
setValidationStringency(ValidationStringency validationStringency) |
forEachRemaining
public SRAUnalignmentIterator(SRAAccession accession, ngs.ReadCollection run, SAMFileHeader header, SRAIterator.RecordRangeInfo recordRangeInfo, Chunk chunk)
run
- opened read collectionheader
- sam headerrecordRangeInfo
- info about record ranges withing SRA archivechunk
- used to determine which unaligned reads the iterator should returnpublic void setValidationStringency(ValidationStringency validationStringency)