| Package | Description |
|---|---|
| pal.mep |
Classes for the analysis of "measurably evolving populations" (mep).
|
| pal.treesearch |
| Class | Description |
|---|---|
| ConstraintModel |
| Class | Description |
|---|---|
| AbstractLeafNode | |
| AbstractParentableConstrainedNode | |
| BranchAccess | |
| ConstrainedNode | |
| ConstrainedNode.HeightAdjustment | |
| ConstraintModel | |
| ConstraintModel.GroupManager | |
| FreeBranch | |
| FreeNode | |
| GeneralConstraintGroupManager | |
| GeneralConstraintGroupManager.LikelihoodScoreAccess | |
| GeneralConstraintGroupManager.Store | |
| GeneralConstructionTool | |
| GeneralOptimisable | |
| GeneralTreeComponent | |
| GroupLeader |
Title: GroupLeader
|
| HeightInformationUser |
Title: HeightInformationUser
|
| NodeAccess | |
| ParentableConstrainedNode | |
| PivotNode | |
| RootAccess | |
| SearchMonitor |
Title: SearchMonitor
|
| UnrootedMLSearcher |