ReadTree

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Summary:
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Field |
Constr |
Method

Detail:
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Constr |
Method

java.lang.Object
- pal.tree.SimpleTree
- - pal.tree.ReadTree

All Implemented Interfaces:

java.io.Serializable, IdGroup, Report, Units, UnitsProvider, Tree
```
public class ReadTree
extends SimpleTree
```
constructs a tree reading in a New Hampshire treefile, taking care for internal labels and branch lengths and binary/nonbinary and rooted/unrooted trees

Version:

$Id: ReadTree.java,v 1.10 2002/10/14 06:54:25 matt Exp $

Author:

Korbinian Strimmer, Alexei Drummond

See Also:

Serialized Form

- Nested Class Summary
  - Nested classes/interfaces inherited from interface pal.misc.IdGroup
    IdGroup.Utils
  - Nested classes/interfaces inherited from interface pal.tree.Tree
    Tree.TreeBase
- Field Summary
  - Fields inherited from interface pal.misc.Units
    DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
- Constructor Summary
  
  Constructors
  Constructor Description
  
  ReadTree(java.io.PushbackReader input)
  read tree from input stream
  
  ReadTree(java.lang.String file)
  read tree from file
- Method Summary
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
  - Methods inherited from class pal.tree.SimpleTree
    createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber

- Constructor Detail
  - ReadTree
```
public ReadTree(java.io.PushbackReader input)
         throws TreeParseException
```
    read tree from input stream
    
    Parameters:
    
    input - input stream
    
    Throws:
    
    TreeParseException
  - ReadTree
```
public ReadTree(java.lang.String file)
         throws TreeParseException,
                java.io.IOException
```
    read tree from file
    
    Parameters:
    
    file - name of file
    
    Throws:
    
    TreeParseException
    
    java.io.IOException

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