java.io.Serializable, IdGroup, Report, Units, UnitsProvider, TreeSUPGMATreepublic class ClusterTree extends SimpleTree
| Modifier and Type | Class | Description |
|---|---|---|
static interface |
ClusterTree.ClusteringMethod |
An interface for describing Clustering methods
To be updated to cope with Ward's method and others...
|
IdGroup.UtilsTree.TreeBase| Modifier and Type | Field | Description |
|---|---|---|
static ClusterTree.ClusteringMethod |
COMPLETE_LINKAGE |
|
static ClusterTree.ClusteringMethod |
SINGLE_LINKAGE |
|
static ClusterTree.ClusteringMethod |
UPGMA |
|
static ClusterTree.ClusteringMethod |
WPGMA |
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS| Constructor | Description |
|---|---|
ClusterTree(DistanceMatrix dm,
ClusterTree.ClusteringMethod cm) |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, waitcreateNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumberpublic static final ClusterTree.ClusteringMethod UPGMA
public static final ClusterTree.ClusteringMethod WPGMA
public static final ClusterTree.ClusteringMethod SINGLE_LINKAGE
public static final ClusterTree.ClusteringMethod COMPLETE_LINKAGE
public ClusterTree(DistanceMatrix dm, ClusterTree.ClusteringMethod cm)