| Package | Description |
|---|---|
| pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
| pal.substmodel |
Classes describing substitution models, i.e.
|
| Modifier and Type | Method | Description |
|---|---|---|
static MolecularClockLikelihoodModel.Instance |
SingleSplitMolecularClockLikelihoodModel.createInstance(RateMatrixGroup beforeSplitMatrices,
RateMatrixGroup afterSplitMatrics,
NeoParameterized acrossSplitParameters,
SingleSplitDistribution probabilityModel,
double splitTime) |
|
static MolecularClockLikelihoodModel.Instance |
SingleSplitMolecularClockLikelihoodModel.createInstance(RateMatrixGroup beforeSplitMatrices,
RateMatrixGroup afterSplitMatrics,
NeoParameterized acrossSplitParameters,
SingleSplitDistribution probabilityModel,
LHCalculator.Factory baseFactory,
double splitTime) |
| Modifier and Type | Class | Description |
|---|---|---|
class |
ConstantIndependentSingleSplitDistribution |
Title: ConstantIndependentSingleSplitDistribution
|
class |
SaturatedSingleSplitDistribution |
Title: SaturatedSingleSplitDistribution
|
class |
VariableIndependentSingleSplitDistribution |
Title: VariableIndependentSingleSplitDistribution
|