| Package | Description |
|---|---|
| pal.substmodel |
Classes describing substitution models, i.e.
|
| Modifier and Type | Class | Description |
|---|---|---|
class |
YangCodonModel |
Yang's model of codon evolution
More advanced codon Substitution Models (of Neilson and Yang) are now included (the M1, and M2 models).
|
| Modifier and Type | Method | Description |
|---|---|---|
static CodonModel |
CodonModel.getInstance(int modelID,
double[] params,
double[] freq) |
Create codon substitution model according to model type
|