| Package | Description |
|---|---|
| pal.statistics |
Classes with useful for statistics (normal distribution,
Gamma distribution, chi-square distribution, exponential distribution,
likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
|
| Modifier and Type | Method | Description |
|---|---|---|
static LikelihoodEvaluator |
LikelihoodEvaluator.Utils.createSimpleEvaluator(SubstitutionModel model) |
Create a simple evaluator that uses UnrootedTreeSearch
|
| Constructor | Description |
|---|---|
GeneralTopologyPool(Tree[] topologies,
LikelihoodEvaluator baseCalculator,
ReplicateLikelihoodEvaluator replicateCalculator,
Alignment baseAlignment,
AlignmentGenerator replicateGenerator) |