ModelSupport

java.lang.Object
- pal.statistics.ModelSupport

All Implemented Interfaces:

Report
```
public class ModelSupport
extends java.lang.Object
implements Report
```
Computes Akaike weights and expected Akaike weights (relative evidence, expected relative evidence) for a set of models and computes corresponding confidence sets

Version:

$Id: ModelSupport.java,v 1.3 2001/07/13 14:39:13 korbinian Exp $

Author:

Korbinian Strimmer

Field Summary

Fields
Modifier and Type	Field	Description
`double[]`	`deltaL`	log-likelihood differences to the best tree
`int[]`	`likelihoodOrder`	likelhood order of the tree hypotheses
`int`	`numBootstraps`	number of bootstrap replicates
`double[]`	`posterior`	posterior probabilities for each hypothesis
`double[]`	`support`	support in each hypothesis
`int[]`	`supportOrder`	support order of the tree hypotheses

Constructor Summary

Constructors
Constructor Description

ModelSupport()

Constructors
Constructor	Description
`ModelSupport()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`compare(double[][] sLogL, int numBoot)`	Determine posterior probabilties and support values for each hypothesis and store results in public arrays posterior, support etc which will automatically be created by this procedure.
`void`	`compare(double[][] pLogL, int[] alias, int numBoot)`	Determine posterior probabilties and support values for each hypothesis and store results in public arrays posterior, support etc which will automatically be created by this procedure.
`void`	`report(java.io.PrintWriter out)`	print human readable report (e.g., on parameters and associated model)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - likelihoodOrder
```
public int[] likelihoodOrder
```
    likelhood order of the tree hypotheses
  - supportOrder
```
public int[] supportOrder
```
    support order of the tree hypotheses
  - deltaL
```
public double[] deltaL
```
    log-likelihood differences to the best tree
  - posterior
```
public double[] posterior
```
    posterior probabilities for each hypothesis
  - support
```
public double[] support
```
    support in each hypothesis
  - numBootstraps
```
public int numBootstraps
```
    number of bootstrap replicates
- Constructor Detail
  - ModelSupport
```
public ModelSupport()
```
- Method Detail
  - compare
```
public void compare(double[][] sLogL,
                    int numBoot)
```
    Determine posterior probabilties and support values for each hypothesis and store results in public arrays posterior, support etc which will automatically be created by this procedure.
    
    Parameters:
    
    sLogL - log-likelihoods of each site
    
    numBoot - number of bootstraps
  - compare
```
public void compare(double[][] pLogL,
                    int[] alias,
                    int numBoot)
```
    Determine posterior probabilties and support values for each hypothesis and store results in public arrays posterior, support etc which will automatically be created by this procedure.
    
    Parameters:
    
    pLogL - log-likelihoods of each pattern
    
    alias - map of patterns to sites in sequence
    
    numBoot - number of bootstraps
  - report
```
public void report(java.io.PrintWriter out)
```
    Description copied from interface: Report
    
    print human readable report (e.g., on parameters and associated model)
    
    Specified by:
    
    report in interface Report
    
    Parameters:
    
    out - output stream

Class ModelSupport

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

likelihoodOrder

supportOrder

deltaL

posterior

support

numBootstraps

Constructor Detail

ModelSupport

Method Detail

compare

compare

report