LikelihoodEvaluator

```
public interface LikelihoodEvaluator
```

Nested Class Summary

Nested Classes
Modifier and Type	Interface	Description
`static interface`	`LikelihoodEvaluator.MLResult`
`static class`	`LikelihoodEvaluator.SimpleMLResult`
`static class`	`LikelihoodEvaluator.Utils`

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`double`	`calculateLikelihood(Tree tree, Alignment alignment)`
`LikelihoodEvaluator.MLResult`	`getMLOptimised(Tree tree, Alignment alignment, AlgorithmCallback callback)`

Method Detail

getMLOptimised

LikelihoodEvaluator.MLResult getMLOptimised(Tree tree,
                                            Alignment alignment,
                                            AlgorithmCallback callback)

calculateLikelihood

double calculateLikelihood(Tree tree,
                           Alignment alignment)

Interface LikelihoodEvaluator

Nested Class Summary

Method Summary

Method Detail

getMLOptimised

calculateLikelihood