AnnotationAlignment, CharacterAlignment, RateMatrix, SubstitutionModelAbstractAlignment, AbstractRateMatrix, AminoAcidModel, BLOSUM62, BootstrappedAlignment, CachedRateMatrix, ClusterTree, CoalescentIntervals, CodonModel, ConcatenatedAlignment, ConcatenatedAnnotatedAlignment, ConstantMutationRate, ConstantPopulation, ConstExpConst, ConstExpGrowth, CPREV, Dayhoff, DemographicModel, ExpandingPopulation, ExponentialGrowth, F81, F84, GammaRates, GapBalancedAlignment, GeneralRateDistributionSubstitutionModel, GTR, HKY, IndelAlignment, IndelAnnotatedAlignment, InvariableSites, JTT, JumbledAlignment, KishinoHasegawaTest, ModelSupport, MTREV24, MultiLocusAnnotatedAlignment, MutationRateModel, NeighborJoiningTree, NucleotideModel, RateDistribution, ReadAlignment, ReadAlignmentOld, ReadTree, ShimodairaHasegawaTest, SimpleAlignment, SimpleAnnotatedAlignment, SimpleCharacterAlignment, SimpleTree, SimulatedAlignment, SingleClassSubstitutionModel, SitePattern, SkylinePlot, SteppedMutationRate, StrippedAlignment, StrippedAnnotatedAlignment, SUPGMATree, TN, Tree.TreeBase, TwoStateModel, UniformRate, UPGMATree, VT, WAG, WindowedMutationRate, YangCodonModel, YangCodonModel.SimpleNeutralSelection, YangCodonModel.SimplePositiveSelectionpublic interface Report
| Modifier and Type | Method | Description |
|---|---|---|
void |
report(java.io.PrintWriter out) |
print human readable report (e.g., on parameters and associated model)
|