| Package | Description |
|---|---|
| pal.coalescent |
Classes to model population genetic processes using the coalescent.
|
| pal.io |
Classes for simple (formatted) input/output from/to files,
strings and standard-in/out streams.
|
| pal.mep |
Classes for the analysis of "measurably evolving populations" (mep).
|
| pal.substmodel |
Classes describing substitution models, i.e.
|
| Class | Description |
|---|---|
| FormattedOutput |
tools to simplify formatted output to a stream
|
| Class | Description |
|---|---|
| FormattedInput |
tools to simplify formatted input from an input stream
|
| FormattedOutput |
tools to simplify formatted output to a stream
|
| InputSource |
convenience class to open input streams
linked to files, stdin, and strings
|
| NexusParseException |
Exception class for the NexusParser.
|
| OutputTarget |
convenience class to create output streams linked to
files, stdout, and strings
|
| Class | Description |
|---|---|
| FormattedOutput |
tools to simplify formatted output to a stream
|
| Class | Description |
|---|---|
| FormattedOutput |
tools to simplify formatted output to a stream
|