| Package | Description |
|---|---|
| pal.coalescent |
Classes to model population genetic processes using the coalescent.
|
| pal.io |
Classes for simple (formatted) input/output from/to files,
strings and standard-in/out streams.
|
| pal.mep |
Classes for the analysis of "measurably evolving populations" (mep).
|
| pal.substmodel |
Classes describing substitution models, i.e.
|
| Modifier and Type | Field | Description |
|---|---|---|
protected FormattedOutput |
DemographicModel.fo |
| Modifier and Type | Method | Description |
|---|---|---|
static FormattedOutput |
FormattedOutput.getInstance() |
create instance of this class
(note that there is no public constructor
as this class is a singleton)
|
| Modifier and Type | Field | Description |
|---|---|---|
protected FormattedOutput |
MutationRateModel.fo |
| Modifier and Type | Field | Description |
|---|---|---|
protected FormattedOutput |
AbstractRateMatrix.format |
|
protected FormattedOutput |
RateDistribution.format |