| Package | Description |
|---|---|
| pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
| pal.treesearch |
| Modifier and Type | Method | Description |
|---|---|---|
static UnconstrainedLikelihoodModel.Instance |
SimpleUnconstrainedLikelihoodModel.createInstance(LHCalculator.Factory base,
SubstitutionModel model) |
Create a SimpleUnconstrainedLikelihoodModel instance
|
static UnconstrainedLikelihoodModel.Instance |
SimpleUnconstrainedLikelihoodModel.createInstance(LHCalculator.Generator base,
SubstitutionModel model) |
Create a SimpleUnconstrainedLikelihoodModel instance
|
| Constructor | Description |
|---|---|
UnconstrainedModel(UnconstrainedLikelihoodModel.Instance likelihoodModel) |