SimpleUnconstrainedLikelihoodModel

java.lang.Object
- pal.eval.SimpleUnconstrainedLikelihoodModel

All Implemented Interfaces:: UnconstrainedLikelihoodModel

public class SimpleUnconstrainedLikelihoodModel
extends java.lang.Object
implements UnconstrainedLikelihoodModel

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class SimpleUnconstrainedLikelihoodModel.InternalImpl

static class SimpleUnconstrainedLikelihoodModel.LeafImpl
- Nested classes/interfaces inherited from interface pal.eval.UnconstrainedLikelihoodModel
  UnconstrainedLikelihoodModel.External, UnconstrainedLikelihoodModel.Instance, UnconstrainedLikelihoodModel.Internal, UnconstrainedLikelihoodModel.Leaf

Nested Classes
Modifier and Type	Class	Description
`static class`	`SimpleUnconstrainedLikelihoodModel.InternalImpl`
`static class`	`SimpleUnconstrainedLikelihoodModel.LeafImpl`

Constructor Summary

Constructors
Constructor Description

SimpleUnconstrainedLikelihoodModel()

Constructors
Constructor	Description
`SimpleUnconstrainedLikelihoodModel()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static UnconstrainedLikelihoodModel.Instance`	`createInstance(LHCalculator.Factory base, SubstitutionModel model)`	Create a SimpleUnconstrainedLikelihoodModel instance
`static UnconstrainedLikelihoodModel.Instance`	`createInstance(LHCalculator.Generator base, SubstitutionModel model)`	Create a SimpleUnconstrainedLikelihoodModel instance

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- SimpleUnconstrainedLikelihoodModel
```
public SimpleUnconstrainedLikelihoodModel()
```

Method Detail

createInstance

public static final UnconstrainedLikelihoodModel.Instance createInstance(LHCalculator.Generator base,
                                                                         SubstitutionModel model)

Create a SimpleUnconstrainedLikelihoodModel instance

Parameters:: base - The base LHCalculator generator to utilise; model - The substitution model
Returns:: An appropriate UnconstrianedLikelihoodModel instance

createInstance

public static final UnconstrainedLikelihoodModel.Instance createInstance(LHCalculator.Factory base,
                                                                         SubstitutionModel model)

Create a SimpleUnconstrainedLikelihoodModel instance

Parameters:: base - The base LHCalculator generator to utilise; model - The substitution model
Returns:: An appropriate UnconstrianedLikelihoodModel instance

Class SimpleUnconstrainedLikelihoodModel

Nested Class Summary

Nested classes/interfaces inherited from interface pal.eval.UnconstrainedLikelihoodModel

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SimpleUnconstrainedLikelihoodModel

Method Detail

createInstance

createInstance