UnconstrainedLikelihoodModel.Leafpublic static final class SimpleUnconstrainedLikelihoodModel.LeafImpl extends java.lang.Object implements UnconstrainedLikelihoodModel.Leaf
| Constructor | Description |
|---|---|
LeafImpl(LHCalculator.Leaf base,
SubstitutionModel model) |
| Modifier and Type | Method | Description |
|---|---|---|
UnconstrainedLikelihoodModel.Leaf |
getCopy() |
Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
|
ConditionalProbabilityStore |
getExtendedConditionalProbabilities(double distance) |
|
ConditionalProbabilityStore |
getFlatConditionalProbabilities() |
public LeafImpl(LHCalculator.Leaf base, SubstitutionModel model)
public ConditionalProbabilityStore getFlatConditionalProbabilities()
getFlatConditionalProbabilities in interface UnconstrainedLikelihoodModel.Leafpublic ConditionalProbabilityStore getExtendedConditionalProbabilities(double distance)
getExtendedConditionalProbabilities in interface UnconstrainedLikelihoodModel.Leafpublic UnconstrainedLikelihoodModel.Leaf getCopy()
UnconstrainedLikelihoodModel.LeafgetCopy in interface UnconstrainedLikelihoodModel.Leaf