MolecularClockLikelihoodModel.Leaf

Enclosing interface:

MolecularClockLikelihoodModel
```
public static interface MolecularClockLikelihoodModel.Leaf
```
A ConstrainedLHCalculator.Leaf object is attached to each leaf node and can be used to calculated conditional probabilities across the related branch. Allows for quick implementations as well as implementations that cope correctly with ambiguous characters

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`ConditionalProbabilityStore`	`calculateExtendedConditionals(double topHeight, double bottomHeight)`
`ConditionalProbabilityStore`	`calculateFlatConditionals(double height)`

Method Detail

calculateExtendedConditionals

ConditionalProbabilityStore calculateExtendedConditionals(double topHeight,
                                                          double bottomHeight)

calculateFlatConditionals

ConditionalProbabilityStore calculateFlatConditionals(double height)

Interface MolecularClockLikelihoodModel.Leaf

Method Summary

Method Detail

calculateExtendedConditionals

calculateFlatConditionals