| Package | Description |
|---|---|
| pal.distance |
Classes for reading and generating distance matrices, including computation
of pairwise distances for sequence data (maximum-likelihood and observed
distances).
|
| pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
| pal.supgma | |
| pal.tree |
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
|
| Class | Description |
|---|---|
| DistanceMatrix |
storage for pairwise distance matrices.
|
| DistanceMatrixAccess | |
| DistanceMatrixGenerator | |
| DistanceParseException |
exception thrown by ReadDistanceMatrix
|
| Class | Description |
|---|---|
| DistanceMatrix |
storage for pairwise distance matrices.
|
| Class | Description |
|---|---|
| DistanceMatrix |
storage for pairwise distance matrices.
|
| DistanceMatrixAccess | |
| DistanceMatrixGenerator |
| Class | Description |
|---|---|
| DistanceMatrix |
storage for pairwise distance matrices.
|
| DistanceMatrixGenerator |