SerialCoalescentSimulator

java.lang.Object
- pal.coalescent.SerialCoalescentSimulator

All Implemented Interfaces:

java.io.Serializable
```
public class SerialCoalescentSimulator
extends java.lang.Object
implements java.io.Serializable
```
Simulates a set of coalescent intervals given a demographic model.

Version:

$Id: SerialCoalescentSimulator.java,v 1.3 2002/10/03 06:06:55 matt Exp $

Author:

Alexei Drummond

See Also:

Serialized Form

Constructor Summary

Constructors
Constructor Description

SerialCoalescentSimulator()

Constructors
Constructor	Description
`SerialCoalescentSimulator()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Tree`	`getTree()`
`CoalescentIntervals`	`simulateIntervals(TimeOrderCharacterData tocd, DemographicModel model, boolean createTree)`	Simulates a set of CoalescentIntervals from a genealogy.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- SerialCoalescentSimulator
```
public SerialCoalescentSimulator()
```

Method Detail

simulateIntervals

public CoalescentIntervals simulateIntervals(TimeOrderCharacterData tocd,
                                             DemographicModel model,
                                             boolean createTree)

Simulates a set of CoalescentIntervals from a genealogy.

Parameters:: tocd - the time order character data determining the order and time in which samples are added.; model - the demographic model to use

getTree
```
public Tree getTree()
```

Class SerialCoalescentSimulator

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SerialCoalescentSimulator

Method Detail

simulateIntervals

getTree