public class ConcatenatedAlignment extends AbstractAlignment
IdGroup.UtilsidGroup, numSeqs, numSites| Constructor | Description |
|---|---|
ConcatenatedAlignment(Alignment[] list) |
concatenate alignments
|
| Modifier and Type | Method | Description |
|---|---|---|
char |
getData(int seq,
int site) |
sequence alignment at (sequence, site)
|
getAlignedSequenceString, getChar, getDataType, getIdCount, getIdentifier, getLength, getSequenceCount, getSiteCount, getState, getStates, guessDataType, isGap, isUnknownState, report, setDataType, setIdentifier, toString, whichIdNumberpublic ConcatenatedAlignment(Alignment[] list) throws java.lang.IllegalArgumentException
Alignment - array with alignment to concatenatejava.lang.IllegalArgumentExceptionpublic char getData(int seq,
int site)
getData in interface AlignmentgetData in class AbstractAlignment