#!/usr/bin/env python

import cmor
import cdms2
import numpy
import os

# Create some empty arrays
# -------------------------
myaxes = numpy.zeros(9, dtype='i')
myaxes2 = numpy.zeros(9, dtype='i')
myvars = numpy.zeros(9, dtype='i')

# Initialize CMOR
# -------------------
cmor.setup(
    inpath="Tables",
    set_verbosity=cmor.CMOR_NORMAL,
    netcdf_file_action=cmor.CMOR_REPLACE_4)
cmor.dataset_json("Test/common_user_input.json")

tables = []
grid_table = cmor.load_table("CMIP6_grids.json")
tables.append(grid_table)

t = 'CMIP6_fx.json'
te = 'orog'
u = 'm'

tables.append(cmor.load_table("%s" % t))
print 'Tables ids:', tables

cmor.set_table(tables[0])

f = cdms2.open("~/Downloads/orog_GIS_LGGE_ELMER2_asmb.nc")
fg = cdms2.open("~/Downloads/Greenland_5km_v1.1.nc")
x = f['x'][:]
y = f['y'][:]
lon_coords = fg['lon'][0, :]
lat_coords = fg['lat'][0, :]


myaxes[0] = cmor.axis(table_entry='y',
                      units='m',
                      coord_vals=y)
myaxes[1] = cmor.axis(table_entry='x',
                      units='m',
                      coord_vals=x)

grid_id = cmor.grid(axis_ids=myaxes[:2],
                    latitude=lat_coords,
                    longitude=lon_coords)

print 'got grid_id:', grid_id
myaxes[2] = grid_id

mapnm = 'polar_stereographic'
params = ["standard_parallel",
          "latitude_of_projection_origin",
          "false_easting",
          "false_northing",
          "straight_vertical_longitude_from_pole",
          "scale_factor_at_projection_origin"]

punits = ["", "", "", "", "", ""]
pvalues = [71., 90., 0., 0., -39., 1.]
cmor.set_grid_mapping(grid_id=myaxes[2],
                      mapping_name=mapnm,
                      parameter_names=params,
                      parameter_values=pvalues,
                      parameter_units=punits)

cmor.set_table(tables[1])
pass_axes = [myaxes[2]]

data = f['orog'][0, :]
myvars[0] = cmor.variable(table_entry=te,
                          units=u,
                          axis_ids=pass_axes,
                          missing_value=data.missing,
                          history='',
                          comment=''
                          )
cmor.write(myvars[0], data)

cmor.close()
