Method Detail

• asSimpleText

  java.lang.StringBuffer asSimpleText​()

• asText

  java.lang.StringBuffer asText​()

• copy

  PhylogenyData copy​()

  Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.

  Returns:

  a ~deep~ copy of this PhylogenyData

• isEqual

  boolean isEqual​(PhylogenyData data)

  Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.

  Parameters:

  PhylogenyData - the PhylogenyData to compare to

  Returns:

  in general, true if and only if all fiels are exactly identical, false otherwise

• toNHX

  java.lang.StringBuffer toNHX​()

• toPhyloXML

  void toPhyloXML​(java.io.Writer writer,
                  int level,
                  java.lang.String indentation)
           throws java.io.IOException

  Writes a phyloXML representation of this phylogeny data.

  Parameters:

  writer -

  level -

  indentation -

  Throws:

  java.io.IOException