Accession

java.lang.Object
- org.forester.phylogeny.data.Accession

All Implemented Interfaces:: java.lang.Comparable<Accession>, PhylogenyData

public final class Accession
extends java.lang.Object
implements PhylogenyData, java.lang.Comparable<Accession>

Nested Class Summary

Nested Classes
Modifier and Type Class Description

static class Accession.Source

Nested Classes
Modifier and Type	Class	Description
`static class`	`Accession.Source`

Constructor Summary

Constructors
Constructor	Description
`Accession(java.lang.String value)`
`Accession(java.lang.String value, java.lang.String source)`
`Accession(java.lang.String value, java.lang.String source, java.lang.String comment)`
`Accession(java.lang.String value, Accession.Source source)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`java.lang.StringBuffer`	`asSimpleText()`
`java.lang.StringBuffer`	`asText()`
`int`	`compareTo(Accession o)`
`PhylogenyData`	`copy()`	Creates a new PhylogenyData object with identical values as this PhylogenyData.
`boolean`	`equals(java.lang.Object o)`
`java.lang.String`	`getComment()`
`java.lang.String`	`getSource()`
`java.lang.String`	`getValue()`
`int`	`hashCode()`
`boolean`	`isEqual(PhylogenyData data)`	Compares this PhylogenyData to PhylogenyData data.
`java.lang.StringBuffer`	`toNHX()`
`void`	`toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation)`	Writes a phyloXML representation of this phylogeny data.
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - Accession
```
public Accession(java.lang.String value)
```
  - Accession
```
public Accession(java.lang.String value,
                 java.lang.String source)
```
  - Accession
```
public Accession(java.lang.String value,
                 Accession.Source source)
```
  - Accession
```
public Accession(java.lang.String value,
                 java.lang.String source,
                 java.lang.String comment)
```
- Method Detail
  - asSimpleText
```
public java.lang.StringBuffer asSimpleText()
```
    Specified by:
    
    asSimpleText in interface PhylogenyData
  - asText
```
public java.lang.StringBuffer asText()
```
    Specified by:
    
    asText in interface PhylogenyData
  - compareTo
```
public int compareTo(Accession o)
```
    Specified by:
    
    compareTo in interface java.lang.Comparable<Accession>
  - copy
```
public PhylogenyData copy()
```
    Description copied from interface: PhylogenyData
    
    Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.
    
    Specified by:
    
    copy in interface PhylogenyData
    
    Returns:
    
    a ~deep~ copy of this PhylogenyData
  - equals
```
public boolean equals(java.lang.Object o)
```
    Overrides:
    
    equals in class java.lang.Object
  - getComment
```
public java.lang.String getComment()
```
  - getSource
```
public java.lang.String getSource()
```
  - getValue
```
public java.lang.String getValue()
```
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class java.lang.Object
  - isEqual
```
public boolean isEqual(PhylogenyData data)
```
    Description copied from interface: PhylogenyData
    
    Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.
    
    Specified by:
    
    isEqual in interface PhylogenyData
    
    Returns:
    
    in general, true if and only if all fiels are exactly identical, false otherwise
  - toNHX
```
public java.lang.StringBuffer toNHX()
```
    Specified by:
    
    toNHX in interface PhylogenyData
  - toPhyloXML
```
public void toPhyloXML(java.io.Writer writer,
                       int level,
                       java.lang.String indentation)
                throws java.io.IOException
```
    Description copied from interface: PhylogenyData
    
    Writes a phyloXML representation of this phylogeny data.
    
    Specified by:
    
    toPhyloXML in interface PhylogenyData
    
    Throws:
    
    java.io.IOException
  - toString
```
public java.lang.String toString()
```
    Overrides:
    
    toString in class java.lang.Object

Class Accession

Nested Class Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

Accession

Accession

Accession

Accession

Method Detail

asSimpleText

asText

compareTo

copy

equals

getComment

getSource

getValue

hashCode

isEqual

toNHX

toPhyloXML

toString