PdbIdLists

java.lang.Object
- org.biojava.nbio.structure.rcsb.PdbIdLists

```
public class PdbIdLists
extends java.lang.Object
```
Utility classes for retrieving lists of PDB IDs.

Since:

4.2.0

Author:

Andreas Prlic

Field Summary

Fields
Modifier and Type Field Description

static java.lang.String SERVICELOCATION

Fields
Modifier and Type	Field	Description
`static java.lang.String`	`SERVICELOCATION`

Constructor Summary

Constructors
Constructor Description

PdbIdLists()

Constructors
Constructor	Description
`PdbIdLists()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static java.io.InputStream`	`doPOST(java.net.URL url, java.lang.String data)`	do a POST to a URL and return the response stream for further processing elsewhere.
`static java.util.Set<java.lang.String>`	`getAllViruses()`	Get the PDB IDs of all virus structures in the current PDB
`static java.util.Set<java.lang.String>`	`getCurrentPDBIds()`	get the list of current PDB IDs
`static java.util.Set<java.lang.String>`	`getGagPolyproteins()`	get all PDB IDs of gag-polyproteins
`static java.util.Set<java.lang.String>`	`getNMRStructures()`	get list of all current NMR structures
`static java.util.Set<java.lang.String>`	`getNucleotides()`
`static java.util.Set<java.lang.String>`	`getRibosomes()`
`static java.util.Set<java.lang.String>`	`getTransmembraneProteins()`	get all Transmembrane proteins
`static void`	`main(java.lang.String[] args)`
`static java.util.Set<java.lang.String>`	`postQuery(java.lang.String xml)`	post am XML query (PDB XML query format) to the RESTful RCSB web service

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- SERVICELOCATION
```
public static final java.lang.String SERVICELOCATION
```
  See Also:
  
  Constant Field Values

Constructor Detail
- PdbIdLists
```
public PdbIdLists()
```

Method Detail

getCurrentPDBIds

public static java.util.Set<java.lang.String> getCurrentPDBIds()
                                                        throws java.io.IOException

get the list of current PDB IDs

Returns:: list of current PDB IDs
Throws:: java.io.IOException

getAllViruses

public static java.util.Set<java.lang.String> getAllViruses()
                                                     throws java.io.IOException

Get the PDB IDs of all virus structures in the current PDB

Returns:: list of all virus structures
Throws:: java.io.IOException

getNMRStructures

public static java.util.Set<java.lang.String> getNMRStructures()
                                                        throws java.io.IOException

get list of all current NMR structures

Returns:: list of NMR structures
Throws:: java.io.IOException

getGagPolyproteins

public static java.util.Set<java.lang.String> getGagPolyproteins()
                                                          throws java.io.IOException

get all PDB IDs of gag-polyproteins

Returns:: list of PDB IDs
Throws:: java.io.IOException

getTransmembraneProteins

public static java.util.Set<java.lang.String> getTransmembraneProteins()
                                                                throws java.io.IOException

get all Transmembrane proteins

Returns:: list of PDB IDs
Throws:: java.io.IOException

getNucleotides

public static java.util.Set<java.lang.String> getNucleotides()
                                                      throws java.io.IOException

Throws:: java.io.IOException

getRibosomes

public static java.util.Set<java.lang.String> getRibosomes()
                                                    throws java.io.IOException

Throws:: java.io.IOException

postQuery

public static java.util.Set<java.lang.String> postQuery(java.lang.String xml)
                                                 throws java.io.IOException

post am XML query (PDB XML query format) to the RESTful RCSB web service

Parameters:: xml -
Returns:: a list of PDB ids.
Throws:: java.io.IOException

doPOST

public static java.io.InputStream doPOST(java.net.URL url,
                                         java.lang.String data)
                                  throws java.io.IOException

do a POST to a URL and return the response stream for further processing elsewhere.

Parameters:: url -
Returns:
Throws:: java.io.IOException

main

public static void main(java.lang.String[] args)

Class PdbIdLists

Field Summary

Constructor Summary