public class FCAlignHelper
extends java.lang.Object
| Constructor | Description |
|---|---|
FCAlignHelper(double[][] sij0,
int M0,
int N0,
double g0,
double h0) |
do an alignment given the provided matrix sij0
|
| Modifier and Type | Method | Description |
|---|---|---|
int |
getAlignPos(int[][] alignList) |
record the aligned pairs in alignList[][0], alignList[][1];
return the number of aligned pairs
|