protected class CeCPUserArgumentProcessor.CeCPStartupParams extends CeUserArgumentProcessor.CeStartupParams
| Modifier and Type | Field | Description |
|---|---|---|
protected CECPParameters.DuplicationHint |
duplicationHint |
|
protected java.lang.Integer |
minCPLength |
gapExtension, gapOpen, maxGapSize, maxOptRMSD, scoringStrategy, showAFPRanges, winSize| Constructor | Description |
|---|---|
CeCPStartupParams() |
| Modifier and Type | Method | Description |
|---|---|---|
CECPParameters.DuplicationHint |
getDuplicationHint() |
|
java.lang.Integer |
getMinCPLength() |
|
void |
setDuplicationHint(CECPParameters.DuplicationHint duplicationHint) |
|
void |
setMinCPLength(java.lang.Integer minCPLength) |
|
java.lang.String |
toString() |
getGapExtension, getGapOpen, getMaxGapSize, getMaxOptRMSD, getScoringStrategy, getWinSize, isShowAFPRanges, setGapExtension, setGapOpen, setMaxGapSize, setMaxOptRMSD, setScoringStrategy, setShowAFPRanges, setWinSizeclone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, waitgetAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPdbDirSplit, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbDirSplit, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenuprotected CECPParameters.DuplicationHint duplicationHint
protected java.lang.Integer minCPLength
public CECPParameters.DuplicationHint getDuplicationHint()
public void setDuplicationHint(CECPParameters.DuplicationHint duplicationHint)
public java.lang.Integer getMinCPLength()
public void setMinCPLength(java.lang.Integer minCPLength)
public java.lang.String toString()
toString in class CeUserArgumentProcessor.CeStartupParams