ClusterAltAligs

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java.lang.Object
- org.biojava.nbio.structure.align.ClusterAltAligs

```
public class ClusterAltAligs
extends java.lang.Object
```
A class that clusters alternative alignments according to their similarity.

Since:

1.5

Version:

%I% %G%

Author:

Andreas Prlic

Field Summary

Fields
Modifier and Type Field Description

static int DEFAULT_CLUSTER_CUTOFF

Constructor Summary

Constructors
Constructor Description

ClusterAltAligs()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static void`	`cluster(AlternativeAlignment[] aligs)`
`static void`	`cluster(AlternativeAlignment[] aligs, int cutoff)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- DEFAULT_CLUSTER_CUTOFF
```
public static final int DEFAULT_CLUSTER_CUTOFF
```
  See Also:
  
  Constant Field Values

Constructor Detail
- ClusterAltAligs
```
public ClusterAltAligs()
```

Method Detail

cluster

public static void cluster(AlternativeAlignment[] aligs)

cluster

public static void cluster(AlternativeAlignment[] aligs,
                           int cutoff)

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