InsdcLocations.GroupLocation

java.lang.Object
- org.biojava.nbio.core.sequence.location.template.AbstractLocation
- - org.biojava.nbio.core.sequence.location.SimpleLocation
  - - org.biojava.nbio.core.sequence.location.InsdcLocations.GroupLocation

All Implemented Interfaces:

java.lang.Iterable<Location>, Location, Accessioned

Enclosing class:

InsdcLocations
```
public static class InsdcLocations.GroupLocation
extends SimpleLocation
```
Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined. The constructor reflects this relationship and only allows the creation of complex locations

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Location
  Location.Tools

Field Summary
- Fields inherited from interface org.biojava.nbio.core.sequence.location.template.Location
  EMPTY

Constructor Summary

Constructors
Constructor	Description
`GroupLocation(int start, int end, Strand strand, java.util.List<Location> subLocations)`
`GroupLocation(int start, int end, Strand strand, Location... subLocations)`
`GroupLocation(java.util.List subLocations)`
`GroupLocation(Location... subLocations)`
`GroupLocation(Point start, Point end, Strand strand, boolean circular, java.util.List<Location> subLocations)`
`GroupLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)`
`GroupLocation(Point start, Point end, Strand strand, java.util.List<Location> subLocations)`
`GroupLocation(Point start, Point end, Strand strand, Location... subLocations)`

Method Summary
- Methods inherited from class org.biojava.nbio.core.sequence.location.template.AbstractLocation
  assertLocation, canComplement, equals, getAccession, getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, hashCode, isBetweenCompounds, isCircular, isComplex, isPartial, isPartialOn3prime, isPartialOn5prime, iterator, reverseSequence, setAccession, setBetweenCompounds, setCircular, setEnd, setPartialOn3prime, setPartialOn5prime, setStart, setStrand, setSubLocations, toString
- Methods inherited from interface java.lang.Iterable
  forEach, spliterator
- Methods inherited from class java.lang.Object
  clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

GroupLocation

public GroupLocation(java.util.List subLocations)

GroupLocation

public GroupLocation(Location... subLocations)

GroupLocation

public GroupLocation(Point start,
                     Point end,
                     Strand strand,
                     boolean circular,
                     Location... subLocations)

GroupLocation

public GroupLocation(Point start,
                     Point end,
                     Strand strand,
                     Location... subLocations)

GroupLocation

public GroupLocation(int start,
                     int end,
                     Strand strand,
                     Location... subLocations)

GroupLocation

public GroupLocation(Point start,
                     Point end,
                     Strand strand,
                     boolean circular,
                     java.util.List<Location> subLocations)

GroupLocation

public GroupLocation(Point start,
                     Point end,
                     Strand strand,
                     java.util.List<Location> subLocations)

GroupLocation

public GroupLocation(int start,
                     int end,
                     Strand strand,
                     java.util.List<Location> subLocations)

Class InsdcLocations.GroupLocation

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.nbio.core.sequence.location.template.Location

Field Summary

Fields inherited from interface org.biojava.nbio.core.sequence.location.template.Location

Constructor Summary

Method Summary

Methods inherited from class org.biojava.nbio.core.sequence.location.template.AbstractLocation

Methods inherited from interface java.lang.Iterable

Methods inherited from class java.lang.Object

Constructor Detail

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation

GroupLocation