AmbiguityDNARNAHybridCompoundSet

Skip navigation links

All Classes

SEARCH:

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method

java.lang.Object
- org.biojava.nbio.core.sequence.template.AbstractCompoundSet<C>
- - org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>
  - - org.biojava.nbio.core.sequence.compound.DNACompoundSet
    - - org.biojava.nbio.core.sequence.compound.AmbiguityDNARNAHybridCompoundSet

All Implemented Interfaces:

CompoundSet<C>
```
public class AmbiguityDNARNAHybridCompoundSet
extends DNACompoundSet
```
Ambiguity set for hybrid DNA/RNA sequences. Needed for some instances of synthetic nucleotide sequences present in protein structures from the PDB.

Author:

Jose Duarte

- Constructor Summary
  
  Constructors
  Constructor Description
  
  AmbiguityDNARNAHybridCompoundSet()
- Method Summary
  
  All Methods Static Methods Concrete Methods
  Modifier and Type Method Description
  
  static AmbiguityDNARNAHybridCompoundSet getDNARNAHybridCompoundSet()
  - Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractCompoundSet
    addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, isValidSequence
  - Methods inherited from class org.biojava.nbio.core.sequence.template.AbstractNucleotideCompoundSet
    addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable
  - Methods inherited from class org.biojava.nbio.core.sequence.compound.DNACompoundSet
    getDNACompoundSet, newNucleotideCompound
  - Methods inherited from class java.lang.Object
    clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- AmbiguityDNARNAHybridCompoundSet
```
public AmbiguityDNARNAHybridCompoundSet()
```

Method Detail

getDNARNAHybridCompoundSet

public static AmbiguityDNARNAHybridCompoundSet getDNARNAHybridCompoundSet()

Skip navigation links

All Classes

Summary:
Nested |
Field |
Constr |
Method

Detail:
Field |
Constr |
Method