S - each element of the alignment Profile is of type SC - each element of an AlignedSequence is a Compound of type Cjava.lang.Iterable<S>, Profile<S,C>public interface ProfileView<S extends Sequence<C>,C extends Compound> extends Profile<S,C>
Profile.StringFormat| Modifier and Type | Method | Description |
|---|---|---|
int |
getEnd() |
Returns the column index of the viewed
Profile corresponding to the final element in this view |
int |
getStart() |
Returns the column index of the viewed
Profile corresponding to the first element in this view |
Profile<S,C> |
getViewedProfile() |
Returns the entire
Profile being viewed |
getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toStringint getEnd()
Profile corresponding to the final element in this viewint getStart()
Profile corresponding to the first element in this view